Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008351.1

Orthogroup ID

OG0006010

Physical Location & Seq

Genomic Coordinates Forward (+)

2525 .. 4430

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008351.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggaaggcactctgggattacttggaggtgggtcttctgggtgctcaacaaatgagtcagcaatgtcaaaggtggaacaacaggtggtggagcaagactatgtgggcatgtcctctgaggtatcttcatacccagctgaaactgagcttgaactgggcctgagcctgggtggtggtggttctgcacagaagtccaaagcctgtgcatggggcgagcgtggaagaatcttgactgctaaagacttcccttccatggtgtctcatgggtctgcaagattctcacagagagcaaataatgcttcttctgtttctggaaataagagggctgctgaagagggtggatctcccactgctgtaagtgctgcaaggatgaacagcttggttaaccaggcaaagactgcaaggtctgaagatgacaaggcagatggggacaattctaaggacacttacaagaagaaaatcaacactggtaataagtcaactgtgaaagagaaagggcatctgggatttgtgaaggttaacatggatggaattcctatagggaggaaagtggatttaaatgctcacacttgctatgagactttagctcaaacacttgaggacatgttcttcagcaccactacaactggcaattcaatcggtggagacaaggaacaagcaacaaaaccctcaaggcttctggatggatcctccgagtttgtgctcacttatgaagataaagacggagactggatgcttgttggagatgtcccttggaggatgttcctcacctcggtgaaaaggcttcgaataatgaggacctctgaggccaacggacttgctccaagatttcaagaaaggagtgagagacaaagaaacagacctatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009880 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010051 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

289

Amino Acids

31.15

Weight (kDa)

7.67

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04550 AT1G04550 AT2G33310 AT2G33310 AT2G33310
fragaria_vesca	FvH4_4g04700 FvH4_4g04700 FvH4_4g04700 FvH4_4g04700
malus_domestica	MD13G1222200.v1.1 MD16G1227100.v1.1
prunus_persica	Prupe.1G049200_v2.0.a1
pyrus_communis	pycom13g19660 pycom16g19020
rosa_chinensis	RchiOBHm_Chr4g0395511
rosa_laevigata	RLG00000009617
rosa_multiflora	Rmu_sc0008351.1_g000001 Rmu_sc0025234.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340450
rosa_rugosa	Rorug03G0355500 Rorug03G0355600
rosa_samantha	Rh4AG060700 Rh4AG061700 Rh4BG059700 Rh4CG065400 Rh4DG055600
rosa_wichuraiana	Rw4G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	403
AclWI	GGATC	3 cut(s)	349, 681, 694
AcsI	RAATTY	1 cut(s)	531
AcuI	CTGAAG	3 cut(s)	351, 429, 595
AfiI	CCNNNNNNNGG	4 cut(s)	166, 207, 253, 772
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	3 cut(s)	152, 636, 833
AjnI	CCWGG	2 cut(s)	165, 387
AleI	CACNNNNGTG	1 cut(s)	773
AluBI	AGCT	4 cut(s)	137, 148, 378, 587
AluI	AGCT	4 cut(s)	137, 148, 378, 587
Alw21I	GWGCWC	2 cut(s)	47, 705
Alw26I	GTCTC	5 cut(s)	264, 572, 639, 720, 841
AlwI	GGATC	3 cut(s)	349, 681, 694
AoxI	GGCC	2 cut(s)	157, 807
ApeKI	GCWGC	2 cut(s)	326, 362
ApoI	RAATTY	1 cut(s)	531
AspS9I	GGNCC	2 cut(s)	157, 798
AsuHPI	GGTGA	2 cut(s)	760, 787
AsuII	TTCGAA	1 cut(s)	787
AvaII	GGWCC	1 cut(s)	798
BamHI	GGATCC	1 cut(s)	686
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	47, 705
BbvI	GCAGC	2 cut(s)	313, 349
BccI	CCATC	3 cut(s)	419, 521, 677
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BciT130I	CCWGG	2 cut(s)	167, 389
BcoDI	GTCTC	5 cut(s)	264, 572, 639, 720, 841
BfmI	CTRYAG	1 cut(s)	537
BisI	GCNGC	2 cut(s)	327, 363
BlsI	GCNGC	2 cut(s)	328, 364
Bme1390I	CCNGG	2 cut(s)	167, 389
Bme18I	GGWCC	1 cut(s)	798
BmgT120I	GGNCC	2 cut(s)	157, 798
BmiI	GGNNCC	1 cut(s)	688
BmrFI	CCNGG	2 cut(s)	167, 389
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	2 cut(s)	508, 723
BmuI	ACTGGG	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	787
BpuEI	CTTGAG	2 cut(s)	617, 655
BsaJI	CCNNGG	4 cut(s)	166, 252, 752, 771
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 207, 253, 772
Bse1I	ACTGG	4 cut(s)	159, 472, 631, 734
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	167, 389
BseDI	CCNNGG	4 cut(s)	166, 252, 752, 771
BseGI	GGATG	5 cut(s)	375, 532, 688, 738, 765
BseLI	CCNNNNNNNGG	4 cut(s)	166, 207, 253, 772
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	4 cut(s)	108, 135, 152, 795
BseNI	ACTGG	4 cut(s)	159, 472, 631, 734
BseXI	GCAGC	2 cut(s)	313, 349
BseYI	CCCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	159, 809
BsiHKAI	GWGCWC	2 cut(s)	47, 705
BslFI	GGGAC	2 cut(s)	443, 734
BslI	CCNNNNNNNGG	4 cut(s)	166, 207, 253, 772
BsmAI	GTCTC	5 cut(s)	264, 572, 639, 720, 841
BsmFI	GGGAC	2 cut(s)	443, 734
BsnI	GGCC	2 cut(s)	159, 809
Bsp119I	TTCGAA	1 cut(s)	787
Bsp1286I	GDGCHC	2 cut(s)	47, 705
Bsp143I	GATC	2 cut(s)	341, 686
Bsp19I	CCATGG	1 cut(s)	252
BspANI	GGCC	2 cut(s)	159, 809
BspCNI	CTCAG	4 cut(s)	109, 136, 153, 796
BspLI	GGNNCC	1 cut(s)	688
BspPI	GGATC	3 cut(s)	349, 681, 694
BspT104I	TTCGAA	1 cut(s)	787
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	4 cut(s)	159, 472, 631, 734
BssECI	CCNNGG	4 cut(s)	166, 252, 752, 771
BssMI	GATC	2 cut(s)	341, 686
BssT1I	CCWWGG	2 cut(s)	252, 752
Bst2UI	CCWGG	2 cut(s)	167, 389
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	327
BstAPI	GCANNNNNTGC	2 cut(s)	296, 398
BstBI	TTCGAA	1 cut(s)	787
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	5 cut(s)	117, 144, 161, 438, 804
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	5 cut(s)	375, 532, 688, 738, 765
BstKTI	GATC	2 cut(s)	344, 689
BstMAI	GTCTC	5 cut(s)	264, 572, 639, 720, 841
BstMBI	GATC	2 cut(s)	341, 686
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 359, 398
BstNI	CCWGG	2 cut(s)	167, 389
BstNSI	RCATGY	2 cut(s)	112, 607
BstSCI	CCNGG	2 cut(s)	165, 387
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	2 cut(s)	313, 349
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	2 cut(s)	341, 686
BstYI	RGATCY	2 cut(s)	341, 686
BsuRI	GGCC	2 cut(s)	159, 809
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	5 cut(s)	375, 532, 688, 738, 765
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	348, 465
Cac8I	GCNNGC	1 cut(s)	215
Cfr13I	GGNCC	2 cut(s)	157, 798
CviAII	CATG	6 cut(s)	109, 207, 253, 263, 523, 604
DdeI	CTNAG	5 cut(s)	117, 144, 161, 438, 804
DpnI	GATC	2 cut(s)	343, 688
DpnII	GATC	2 cut(s)	341, 686
DraI	TTTAAA	1 cut(s)	558
DrdI	GACNNNNNNGTC	1 cut(s)	403
DseDI	GACNNNNNNGTC	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	252, 752
Eco47I	GGWCC	1 cut(s)	798
Eco57I	CTGAAG	3 cut(s)	351, 429, 595
EcoO109I	RGGNCCY	1 cut(s)	798
EcoRI	GAATTC	1 cut(s)	531
EcoRII	CCWGG	2 cut(s)	165, 387
EcoT14I	CCWWGG	2 cut(s)	252, 752
ErhI	CCWWGG	2 cut(s)	252, 752
FaeI	CATG	6 cut(s)	112, 210, 256, 266, 526, 607
FaqI	GGGAC	2 cut(s)	443, 734
FatI	CATG	6 cut(s)	108, 206, 252, 262, 522, 603
Fnu4HI	GCNGC	2 cut(s)	327, 363
FokI	GGATG	5 cut(s)	382, 539, 695, 745, 772
Fsp4HI	GCNGC	2 cut(s)	327, 363
GluI	GCNGC	2 cut(s)	327, 363
GsaI	CCCAGC	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	159, 809
Hin1II	CATG	6 cut(s)	112, 210, 256, 266, 526, 607
HincII	GTYRAC	3 cut(s)	385, 480, 520
HindII	GTYRAC	3 cut(s)	385, 480, 520
HinfI	GANTC	3 cut(s)	56, 225, 276
HpaI	GTTAAC	2 cut(s)	385, 520
HphI	GGTGA	2 cut(s)	760, 787
Hpy166II	GTNNAC	3 cut(s)	385, 480, 520
Hpy188I	TCNGA	4 cut(s)	118, 409, 694, 805
Hpy188III	TCNNGA	4 cut(s)	229, 312, 680, 833
Hpy8I	GTNNAC	3 cut(s)	385, 480, 520
HpyAV	CCTTC	2 cut(s)	258, 508
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4V	TGCA	5 cut(s)	185, 206, 272, 365, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 359, 398
HpyF3I	CTNAG	5 cut(s)	117, 144, 161, 438, 804
Hsp92II	CATG	6 cut(s)	112, 210, 256, 266, 526, 607
KspAI	GTTAAC	2 cut(s)	385, 520
Kzo9I	GATC	2 cut(s)	341, 686
LmnI	GCTCC	2 cut(s)	91, 826
Lsp1109I	GCAGC	2 cut(s)	313, 349
LweI	GCATC	2 cut(s)	508, 723
MalI	GATC	2 cut(s)	343, 688
MboI	GATC	2 cut(s)	341, 686
MboII	GAAGA	9 cut(s)	27, 117, 234, 294, 344, 422, 466, 601, 725
MflI	RGATCY	2 cut(s)	341, 686
MhlI	GDGCHC	2 cut(s)	47, 705
MluCI	AATT	3 cut(s)	433, 531, 631
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	721
MseI	TTAA	3 cut(s)	384, 519, 557
MslI	CAYNNNNRTG	1 cut(s)	773
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	167, 389
MvaI	CCWGG	2 cut(s)	167, 389
MwoI	GCNNNNNNNGC	3 cut(s)	296, 359, 398
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	2 cut(s)	341, 686
NlaIII	CATG	6 cut(s)	112, 210, 256, 266, 526, 607
NlaIV	GGNNCC	1 cut(s)	688
NspI	RCATGY	2 cut(s)	112, 607
NspV	TTCGAA	1 cut(s)	787
OliI	CACNNNNGTG	1 cut(s)	773
PciI	ACATGT	1 cut(s)	603
PfeI	GAWTC	2 cut(s)	225, 276
PkrI	GCNGC	2 cut(s)	328, 364
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PpuMI	RGGWCCY	1 cut(s)	798
PscI	ACATGT	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	798
Psp6I	CCWGG	2 cut(s)	165, 387
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	2 cut(s)	165, 387
PspN4I	GGNNCC	1 cut(s)	688
PspPI	GGNCC	2 cut(s)	157, 798
PspPPI	RGGWCCY	1 cut(s)	798
PsuI	RGATCY	2 cut(s)	341, 686
PvuII	CAGCTG	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	773
SaqAI	TTAA	3 cut(s)	384, 519, 557
SatI	GCNGC	2 cut(s)	327, 363
Sau3AI	GATC	2 cut(s)	341, 686
Sau96I	GGNCC	2 cut(s)	157, 798
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	167, 389
SduI	GDGCHC	2 cut(s)	47, 705
SfaNI	GCATC	2 cut(s)	508, 723
SfcI	CTRYAG	1 cut(s)	537
SfuI	TTCGAA	1 cut(s)	787
SinI	GGWCC	1 cut(s)	798
SmiI	ATTTAAAT	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	773
SmlI	CTYRAG	2 cut(s)	596, 670
SmoI	CTYRAG	2 cut(s)	596, 670
Sse9I	AATT	3 cut(s)	433, 531, 631
StyD4I	CCNGG	2 cut(s)	165, 387
StyI	CCWWGG	2 cut(s)	252, 752
SwaI	ATTTAAAT	1 cut(s)	558
TaaI	ACNGT	1 cut(s)	484
TaqI	TCGA	1 cut(s)	787
TasI	AATT	3 cut(s)	433, 531, 631
TfiI	GAWTC	2 cut(s)	225, 276
Tru1I	TTAA	3 cut(s)	384, 519, 557
Tru9I	TTAA	3 cut(s)	384, 519, 557
TscAI	CASTG	2 cut(s)	355, 472
TseI	GCWGC	2 cut(s)	326, 362
TspDTI	ATGAA	3 cut(s)	117, 386, 726
TspGWI	ACGGA	2 cut(s)	738, 828
TspRI	CASTG	2 cut(s)	355, 472
VpaK11BI	GGWCC	1 cut(s)	798
XapI	RAATTY	1 cut(s)	531
XceI	RCATGY	2 cut(s)	112, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.