Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006010

Physical Location & Seq

Genomic Coordinates Forward (+)

8604090 .. 8607353

Gene Structure 3264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG055600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAAGGCACTCTGGGATTACTTGGAGGTGGGTCTTCTGGGTGCTCAACAAATGAGTCAGCAATGTCAAAGGTGGAACAACAGGTGGTGGAGCAAGACTATGTGGGCATGTCCTCTGAGGTATCTTCATACCCAGCTGAAACTGAGCTTGAACTGGGCCTGAGCCTGGGTGGTGGTGGTTCTGCACAGAAGTCCAAAGCCTGTACATGGGGCGAGCGTGGAAGAATCTTGACTGCTAAAGACTTCCCTTCCATGGTGTCTCATGGGTCTGCAAGATTCTCACAGAGAGCAAATAATGCTTCTTCTGTTTCTGGAAATAAGAGGGCTGCTGAAGAGGGTGGATCTCCCACTGCTGTAAGTCAAGTTGTGGGATGGCCACCTATAAGTGCTACAAGGATGAACAGCTTGGTTAACCAGGCAAAGACTGCAAGGTCTGAAGATGACAAGGCAGATGGGGACAAATCTAAGGACACTTACAAGAAGAAAATCAACACTGGTAATAAGTCAACTGTGAAAGAGAAAGGGCATCTGGGATTTGTGAAGGCCAACATGGATGGAATTCCTATAGGGAGGAAAGTGGATTTAAATGCTCACACTTGCTATGAGACTTTAGCTCAAACACTTGAGGACATGTTCTTCAGCACCACTACAACTGGCAATTCAATCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009880 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010051 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

223

Amino Acids

23.41

Weight (kDa)

6.84

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	47 - 217	5.7e-28	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04550 AT1G04550 AT2G33310 AT2G33310 AT2G33310
fragaria_vesca	FvH4_4g04700 FvH4_4g04700 FvH4_4g04700 FvH4_4g04700
malus_domestica	MD13G1222200.v1.1 MD16G1227100.v1.1
prunus_persica	Prupe.1G049200_v2.0.a1
pyrus_communis	pycom13g19660 pycom16g19020
rosa_chinensis	RchiOBHm_Chr4g0395511
rosa_laevigata	RLG00000009617
rosa_multiflora	Rmu_sc0008351.1_g000001 Rmu_sc0025234.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340450
rosa_rugosa	Rorug03G0355500 Rorug03G0355600
rosa_samantha	Rh4AG060700 Rh4AG061700 Rh4BG059700 Rh4CG065400 Rh4DG055600
rosa_wichuraiana	Rw4G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
AclWI	GGATC	1 cut(s)	349
AcoI	YGGCCR	1 cut(s)	374
AcsI	RAATTY	1 cut(s)	558
AcuI	CTGAAG	3 cut(s)	351, 456, 622
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	3 cut(s)	166, 207, 253
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	2 cut(s)	152, 663
AjnI	CCWGG	2 cut(s)	165, 414
AluBI	AGCT	4 cut(s)	137, 148, 405, 614
AluI	AGCT	4 cut(s)	137, 148, 405, 614
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	2 cut(s)	264, 599
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	3 cut(s)	157, 374, 543
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	558
AspS9I	GGNCC	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	3 cut(s)	366, 446, 548
BcgI	CGANNNNNNTGC	1 cut(s)	646
BciT130I	CCWGG	2 cut(s)	167, 416
BcoDI	GTCTC	2 cut(s)	264, 599
BfmI	CTRYAG	1 cut(s)	564
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	2 cut(s)	167, 416
BmgT120I	GGNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	167, 416
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	535
BmuI	ACTGGG	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	644
BsaJI	CCNNGG	2 cut(s)	166, 252
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 207, 253
Bse1I	ACTGG	3 cut(s)	159, 499, 658
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	167, 416
BseDI	CCNNGG	2 cut(s)	166, 252
BseGI	GGATG	3 cut(s)	377, 402, 559
BseLI	CCNNNNNNNGG	3 cut(s)	166, 207, 253
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	3 cut(s)	108, 135, 152
BseNI	ACTGG	3 cut(s)	159, 499, 658
BseXI	GCAGC	1 cut(s)	313
BseYI	CCCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	159, 376, 545
BsiHKAI	GWGCWC	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	3 cut(s)	166, 207, 253
BsmAI	GTCTC	2 cut(s)	264, 599
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	3 cut(s)	159, 376, 545
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp1407I	TGTACA	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	341
Bsp19I	CCATGG	1 cut(s)	252
BspANI	GGCC	3 cut(s)	159, 376, 545
BspCNI	CTCAG	3 cut(s)	109, 136, 153
BspPI	GGATC	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	69
BsrGI	TGTACA	1 cut(s)	203
BsrI	ACTGG	3 cut(s)	159, 499, 658
BssECI	CCNNGG	2 cut(s)	166, 252
BssMI	GATC	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	167, 416
Bst4CI	ACNGT	1 cut(s)	511
Bst6I	CTCTTC	1 cut(s)	327
BstAPI	GCANNNNNTGC	2 cut(s)	296, 425
BstAUI	TGTACA	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	4 cut(s)	117, 144, 161, 465
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	3 cut(s)	377, 402, 559
BstKTI	GATC	1 cut(s)	344
BstMAI	GTCTC	2 cut(s)	264, 599
BstMBI	GATC	1 cut(s)	341
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 425
BstNI	CCWGG	2 cut(s)	167, 416
BstNSI	RCATGY	2 cut(s)	112, 634
BstSCI	CCNGG	2 cut(s)	165, 414
BstSFI	CTRYAG	1 cut(s)	564
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BsuRI	GGCC	3 cut(s)	159, 376, 545
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	3 cut(s)	377, 402, 559
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	348, 492
Cac8I	GCNNGC	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	6 cut(s)	109, 207, 253, 263, 550, 631
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	4 cut(s)	117, 144, 161, 465
DpnI	GATC	1 cut(s)	343
DpnII	GATC	1 cut(s)	341
DraI	TTTAAA	1 cut(s)	585
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
EaeI	YGGCCR	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	252
Eco57I	CTGAAG	3 cut(s)	351, 456, 622
EcoRI	GAATTC	1 cut(s)	558
EcoRII	CCWGG	2 cut(s)	165, 414
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	6 cut(s)	112, 210, 256, 266, 553, 634
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	6 cut(s)	108, 206, 252, 262, 549, 630
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	3 cut(s)	384, 409, 566
Fsp4HI	GCNGC	1 cut(s)	327
GluI	GCNGC	1 cut(s)	327
GsaI	CCCAGC	1 cut(s)	137
HaeIII	GGCC	3 cut(s)	159, 376, 545
Hin1II	CATG	6 cut(s)	112, 210, 256, 266, 553, 634
HincII	GTYRAC	2 cut(s)	412, 507
HindII	GTYRAC	2 cut(s)	412, 507
HinfI	GANTC	3 cut(s)	56, 225, 276
HpaI	GTTAAC	1 cut(s)	412
Hpy166II	GTNNAC	2 cut(s)	412, 507
Hpy188I	TCNGA	2 cut(s)	118, 436
Hpy188III	TCNNGA	2 cut(s)	229, 312
Hpy8I	GTNNAC	2 cut(s)	412, 507
HpyAV	CCTTC	2 cut(s)	258, 535
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4V	TGCA	3 cut(s)	185, 272, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 425
HpyF3I	CTNAG	4 cut(s)	117, 144, 161, 465
Hsp92II	CATG	6 cut(s)	112, 210, 256, 266, 553, 634
KspAI	GTTAAC	1 cut(s)	412
Kzo9I	GATC	1 cut(s)	341
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	535
MalI	GATC	1 cut(s)	343
MboI	GATC	1 cut(s)	341
MboII	GAAGA	8 cut(s)	27, 117, 234, 294, 344, 449, 493, 628
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	47
MlsI	TGGCCA	1 cut(s)	376
MluCI	AATT	2 cut(s)	558, 658
MluNI	TGGCCA	1 cut(s)	376
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	7 cut(s)	20, 112, 124, 315, 328, 564, 619
Mox20I	TGGCCA	1 cut(s)	376
MscI	TGGCCA	1 cut(s)	376
MseI	TTAA	2 cut(s)	411, 584
Msp20I	TGGCCA	1 cut(s)	376
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	167, 416
MvaI	CCWGG	2 cut(s)	167, 416
MwoI	GCNNNNNNNGC	2 cut(s)	296, 425
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	341
NlaIII	CATG	6 cut(s)	112, 210, 256, 266, 553, 634
NspI	RCATGY	2 cut(s)	112, 634
PciI	ACATGT	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	225, 276
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PscI	ACATGT	1 cut(s)	630
Psp6I	CCWGG	2 cut(s)	165, 414
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	2 cut(s)	165, 414
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	411, 584
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	1 cut(s)	341
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	167, 416
SduI	GDGCHC	1 cut(s)	47
SfaNI	GCATC	1 cut(s)	535
SfcI	CTRYAG	1 cut(s)	564
SmiI	ATTTAAAT	1 cut(s)	585
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	2 cut(s)	558, 658
StyD4I	CCNGG	2 cut(s)	165, 414
StyI	CCWWGG	1 cut(s)	252
SwaI	ATTTAAAT	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	511
TasI	AATT	2 cut(s)	558, 658
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	225, 276
Tru1I	TTAA	2 cut(s)	411, 584
Tru9I	TTAA	2 cut(s)	411, 584
TscAI	CASTG	2 cut(s)	355, 499
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	117, 413
TspRI	CASTG	2 cut(s)	355, 499
XapI	RAATTY	1 cut(s)	558
XceI	RCATGY	2 cut(s)	112, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.