Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006010

Physical Location & Seq

Genomic Coordinates Forward (+)

11235715 .. 11238366

Gene Structure 2652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36795

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCGCACTAGCAGACATTTGGGTCCCAATATCATCACTCTCTCCACCATCTCTCCTAACCTACCTCTTTGCTTTGCTTCTGCCTCCTTCATTTTCATTCTTGTCTATTCCTTCCCTTTCCCTTCCTCCTATACTACTACTACTTCTCAAACTCCCACATTTCTCAAATCGAAGAAACCCCATCTCTCTCTCTTTCTCTCGCAACTCCCAACTTCTTCAACCTGTCTAGAAATCTCTCTTCTGGTTTTAATGGAAGGCACTCTGGGATTACTTGGAGGTGGGTCTTCTGGGTGCTCAACAAATGAGTCAGCAATGTCAAAGGTGGAACAACAGGTGGTGGAGCAAGACTATGTGGGCATGTCCTCTGAGGTATCTTCATACCCAGCTGAAACTGAGCTTGAACTGGGCCTGAGCCTGGGTGGTGGTGGTTCTGCACAGAAGTCCAAAGCCTGTGCATGGGGCGAGCGTGGAAGAATCTTGACTGCTAAAGACTTCCCTTCCATGGTGTCTCATGGGTCTGCAAGATTCTCACAGAGAGCAAATAATGCTTCTTCTGTTTCTGGAAATAAGAGGGCTGCTGAAGAGGGTGGATCTCCCACTGCTGTAAGTCAAGTTGTGGGATGGCCACCTATAAGTGCTGCAAGGATGAACAGCTTGGTTAACCAGGCAAAGACTGCAAGGTCTGAAGATGACAAGGCAGATGGGGACAATTCTAAGGACACTTACAAGAAGAAAATCAACACTGGTAATAAGTCAACTGTGAAAGAGAAAGGGCATCTGGGATTTGTGAAGGTCAACATGGATGGAATTCCTATAGGGAGGAAAGTGGATTTAAATGCTCACACTTGCTATGAGACTTTAGCTCAAACACTTGAGGACATGTTCTTCAGCACCACTACAACTGGCAATTCAATCGGTGGAGACAAGGAACAAGCAACAAAACCCTCAAGGCTTCTGGATGGATCCTCCGAGTTTGTGCTCACTTATGAAGACAAAGACGGAGACTGGATGCTTGTTGGAGATGTCCCTTGGAGGATGTTCCTCACCTCGGTGAAAAGGCTTCGAATAATGAGGACCTCTGAGGCCAACGGACTCGGTATGCAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009880 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010051 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

369

Amino Acids

39.69

Weight (kDa)

8.18

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	130 - 366	2.6e-61	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04550 AT1G04550 AT2G33310 AT2G33310 AT2G33310
fragaria_vesca	FvH4_4g04700 FvH4_4g04700 FvH4_4g04700 FvH4_4g04700
malus_domestica	MD13G1222200.v1.1 MD16G1227100.v1.1
prunus_persica	Prupe.1G049200_v2.0.a1
pyrus_communis	pycom13g19660 pycom16g19020
rosa_chinensis	RchiOBHm_Chr4g0395511
rosa_laevigata	RLG00000009617
rosa_multiflora	Rmu_sc0008351.1_g000001 Rmu_sc0025234.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340450
rosa_rugosa	Rorug03G0355500 Rorug03G0355600
rosa_samantha	Rh4AG060700 Rh4AG061700 Rh4BG059700 Rh4CG065400 Rh4DG055600
rosa_wichuraiana	Rw4G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	21, 679
Acc16I	TGCGCA	1 cut(s)	5
AclWI	GGATC	3 cut(s)	598, 957, 970
AcoI	YGGCCR	1 cut(s)	623
AcsI	RAATTY	1 cut(s)	807
AcuI	CTGAAG	3 cut(s)	600, 705, 871
AfiI	CCNNNNNNNGG	4 cut(s)	415, 456, 502, 1048
AflIII	ACRYGT	1 cut(s)	879
AgsI	TTSAA	3 cut(s)	219, 401, 912
AjnI	CCWGG	2 cut(s)	414, 663
AleI	CACNNNNGTG	1 cut(s)	1049
AluBI	AGCT	4 cut(s)	386, 397, 654, 863
AluI	AGCT	4 cut(s)	386, 397, 654, 863
Alw21I	GWGCWC	2 cut(s)	296, 981
Alw26I	GTCTC	4 cut(s)	513, 848, 915, 996
AlwI	GGATC	3 cut(s)	598, 957, 970
AoxI	GGCC	3 cut(s)	406, 623, 1083
ApeKI	GCWGC	2 cut(s)	575, 638
ApoI	RAATTY	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	3 cut(s)	23, 406, 1074
AsuHPI	GGTGA	2 cut(s)	1036, 1063
AsuII	TTCGAA	1 cut(s)	1063
AvaII	GGWCC	2 cut(s)	23, 1074
BalI	TGGCCA	1 cut(s)	625
BamHI	GGATCC	1 cut(s)	962
BbsI	GAAGAC	2 cut(s)	276, 996
Bbv12I	GWGCWC	2 cut(s)	296, 981
BbvI	GCAGC	2 cut(s)	562, 625
BccI	CCATC	6 cut(s)	56, 189, 615, 695, 797, 953
BcgI	CGANNNNNNTGC	2 cut(s)	895, 929
BciT130I	CCWGG	2 cut(s)	416, 665
BcoDI	GTCTC	4 cut(s)	513, 848, 915, 996
BfaI	CTAG	2 cut(s)	9, 227
BfmI	CTRYAG	1 cut(s)	813
BisI	GCNGC	2 cut(s)	576, 639
BlsI	GCNGC	2 cut(s)	577, 640
Bme1390I	CCNGG	2 cut(s)	416, 665
Bme18I	GGWCC	2 cut(s)	23, 1074
BmgT120I	GGNCC	3 cut(s)	23, 406, 1074
BmiI	GGNNCC	3 cut(s)	24, 25, 964
BmrFI	CCNGG	2 cut(s)	416, 665
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	2 cut(s)	784, 999
BmuI	ACTGGG	1 cut(s)	413
BpiI	GAAGAC	2 cut(s)	276, 996
Bpu10I	CCTNAGC	1 cut(s)	410
Bpu14I	TTCGAA	1 cut(s)	1063
BpuEI	CTTGAG	2 cut(s)	893, 931
BsaJI	CCNNGG	4 cut(s)	415, 501, 1028, 1047
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	4 cut(s)	415, 456, 502, 1048
Bse1I	ACTGG	4 cut(s)	408, 748, 907, 1010
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	416, 665
BseDI	CCNNGG	4 cut(s)	415, 501, 1028, 1047
BseGI	GGATG	6 cut(s)	626, 651, 808, 964, 1014, 1041
BseLI	CCNNNNNNNGG	4 cut(s)	415, 456, 502, 1048
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	4 cut(s)	357, 384, 401, 1071
BseNI	ACTGG	4 cut(s)	408, 748, 907, 1010
BseXI	GCAGC	2 cut(s)	562, 625
BseYI	CCCAGC	1 cut(s)	382
BsgI	GTGCAG	1 cut(s)	417
BshFI	GGCC	3 cut(s)	408, 625, 1085
BsiHKAI	GWGCWC	2 cut(s)	296, 981
BslFI	GGGAC	3 cut(s)	9, 719, 1010
BslI	CCNNNNNNNGG	4 cut(s)	415, 456, 502, 1048
BsmAI	GTCTC	4 cut(s)	513, 848, 915, 996
BsmFI	GGGAC	3 cut(s)	9, 719, 1010
BsnI	GGCC	3 cut(s)	408, 625, 1085
Bsp119I	TTCGAA	1 cut(s)	1063
Bsp1286I	GDGCHC	2 cut(s)	296, 981
Bsp143I	GATC	2 cut(s)	590, 962
Bsp19I	CCATGG	1 cut(s)	501
BspANI	GGCC	3 cut(s)	408, 625, 1085
BspCNI	CTCAG	4 cut(s)	358, 385, 402, 1072
BspLI	GGNNCC	3 cut(s)	24, 25, 964
BspPI	GGATC	3 cut(s)	598, 957, 970
BspT104I	TTCGAA	1 cut(s)	1063
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	4 cut(s)	408, 748, 907, 1010
BssECI	CCNNGG	4 cut(s)	415, 501, 1028, 1047
BssMI	GATC	2 cut(s)	590, 962
BssT1I	CCWWGG	2 cut(s)	501, 1028
Bst2UI	CCWGG	2 cut(s)	416, 665
Bst4CI	ACNGT	1 cut(s)	760
Bst6I	CTCTTC	2 cut(s)	243, 576
BstAPI	GCANNNNNTGC	2 cut(s)	545, 674
BstBI	TTCGAA	1 cut(s)	1063
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	5 cut(s)	366, 393, 410, 714, 1080
BstDSI	CCRYGG	1 cut(s)	501
BstF5I	GGATG	6 cut(s)	626, 651, 808, 964, 1014, 1041
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	593, 965
BstMAI	GTCTC	4 cut(s)	513, 848, 915, 996
BstMBI	GATC	2 cut(s)	590, 962
BstMWI	GCNNNNNNNGC	2 cut(s)	545, 674
BstNI	CCWGG	2 cut(s)	416, 665
BstNSI	RCATGY	2 cut(s)	361, 883
BstSCI	CCNGG	2 cut(s)	414, 663
BstSFI	CTRYAG	1 cut(s)	813
BstV1I	GCAGC	2 cut(s)	562, 625
BstV2I	GAAGAC	2 cut(s)	276, 996
BstX2I	RGATCY	2 cut(s)	590, 962
BstYI	RGATCY	2 cut(s)	590, 962
BsuRI	GGCC	3 cut(s)	408, 625, 1085
BtgI	CCRYGG	1 cut(s)	501
BtsCI	GGATG	6 cut(s)	626, 651, 808, 964, 1014, 1041
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	2 cut(s)	597, 741
Cac8I	GCNNGC	1 cut(s)	464
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	3 cut(s)	23, 406, 1074
CviAII	CATG	6 cut(s)	358, 456, 502, 512, 799, 880
DdeI	CTNAG	5 cut(s)	366, 393, 410, 714, 1080
DpnI	GATC	2 cut(s)	592, 964
DpnII	GATC	2 cut(s)	590, 962
DraI	TTTAAA	1 cut(s)	834
DrdI	GACNNNNNNGTC	2 cut(s)	21, 679
DseDI	GACNNNNNNGTC	2 cut(s)	21, 679
EaeI	YGGCCR	1 cut(s)	623
Eam1104I	CTCTTC	2 cut(s)	243, 576
EarI	CTCTTC	2 cut(s)	243, 576
Eco130I	CCWWGG	2 cut(s)	501, 1028
Eco47I	GGWCC	2 cut(s)	23, 1074
Eco57I	CTGAAG	3 cut(s)	600, 705, 871
EcoO109I	RGGNCCY	2 cut(s)	23, 1074
EcoRI	GAATTC	1 cut(s)	807
EcoRII	CCWGG	2 cut(s)	414, 663
EcoT14I	CCWWGG	2 cut(s)	501, 1028
ErhI	CCWWGG	2 cut(s)	501, 1028
FaeI	CATG	6 cut(s)	361, 459, 505, 515, 802, 883
FaqI	GGGAC	3 cut(s)	9, 719, 1010
FatI	CATG	6 cut(s)	357, 455, 501, 511, 798, 879
Fnu4HI	GCNGC	2 cut(s)	576, 639
FokI	GGATG	6 cut(s)	633, 658, 815, 971, 1021, 1048
Fsp4HI	GCNGC	2 cut(s)	576, 639
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	2 cut(s)	9, 227
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	576, 639
GsaI	CCCAGC	1 cut(s)	386
HaeIII	GGCC	3 cut(s)	408, 625, 1085
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	6 cut(s)	361, 459, 505, 515, 802, 883
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	3 cut(s)	661, 756, 796
HindII	GTYRAC	3 cut(s)	661, 756, 796
HinfI	GANTC	4 cut(s)	305, 474, 525, 1092
HpaI	GTTAAC	1 cut(s)	661
HphI	GGTGA	2 cut(s)	1036, 1063
Hpy166II	GTNNAC	3 cut(s)	661, 756, 796
Hpy188I	TCNGA	4 cut(s)	367, 685, 970, 1081
Hpy188III	TCNNGA	4 cut(s)	227, 478, 561, 956
Hpy8I	GTNNAC	3 cut(s)	661, 756, 796
HpyAV	CCTTC	6 cut(s)	97, 121, 132, 248, 507, 784
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4V	TGCA	6 cut(s)	434, 455, 521, 641, 677, 1102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	545, 674
HpyF3I	CTNAG	5 cut(s)	366, 393, 410, 714, 1080
Hsp92II	CATG	6 cut(s)	361, 459, 505, 515, 802, 883
HspAI	GCGC	1 cut(s)	4
KflI	GGGWCCC	1 cut(s)	23
KspAI	GTTAAC	1 cut(s)	661
Kzo9I	GATC	2 cut(s)	590, 962
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	2 cut(s)	562, 625
LweI	GCATC	2 cut(s)	784, 999
MaeI	CTAG	2 cut(s)	9, 227
MalI	GATC	2 cut(s)	592, 964
MboI	GATC	2 cut(s)	590, 962
MflI	RGATCY	2 cut(s)	590, 962
MhlI	GDGCHC	2 cut(s)	296, 981
MlsI	TGGCCA	1 cut(s)	625
MluCI	AATT	4 cut(s)	709, 807, 907, 1103
MluNI	TGGCCA	1 cut(s)	625
MlyI	GAGTC	2 cut(s)	314, 1086
MmeI	TCCRAC	1 cut(s)	997
Mox20I	TGGCCA	1 cut(s)	625
MscI	TGGCCA	1 cut(s)	625
MseI	TTAA	4 cut(s)	248, 660, 833, 1108
MslI	CAYNNNNRTG	1 cut(s)	1049
Msp20I	TGGCCA	1 cut(s)	625
MspA1I	CMGCKG	1 cut(s)	386
MspR9I	CCNGG	2 cut(s)	416, 665
MvaI	CCWGG	2 cut(s)	416, 665
MwoI	GCNNNNNNNGC	2 cut(s)	545, 674
NcoI	CCATGG	1 cut(s)	501
NdeII	GATC	2 cut(s)	590, 962
NlaIII	CATG	6 cut(s)	361, 459, 505, 515, 802, 883
NlaIV	GGNNCC	3 cut(s)	24, 25, 964
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	2 cut(s)	361, 883
NspV	TTCGAA	1 cut(s)	1063
OliI	CACNNNNGTG	1 cut(s)	1049
PciI	ACATGT	1 cut(s)	879
PfeI	GAWTC	2 cut(s)	474, 525
PkrI	GCNGC	2 cut(s)	577, 640
PleI	GAGTC	2 cut(s)	313, 1086
PpsI	GAGTC	2 cut(s)	313, 1086
PpuMI	RGGWCCY	2 cut(s)	23, 1074
PscI	ACATGT	1 cut(s)	879
Psp5II	RGGWCCY	2 cut(s)	23, 1074
Psp6I	CCWGG	2 cut(s)	414, 663
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	2 cut(s)	414, 663
PspN4I	GGNNCC	3 cut(s)	24, 25, 964
PspPI	GGNCC	3 cut(s)	23, 406, 1074
PspPPI	RGGWCCY	2 cut(s)	23, 1074
PsuI	RGATCY	2 cut(s)	590, 962
PvuII	CAGCTG	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	1049
SaqAI	TTAA	4 cut(s)	248, 660, 833, 1108
SatI	GCNGC	2 cut(s)	576, 639
Sau3AI	GATC	2 cut(s)	590, 962
Sau96I	GGNCC	3 cut(s)	23, 406, 1074
SchI	GAGTC	2 cut(s)	314, 1086
ScrFI	CCNGG	2 cut(s)	416, 665
SduI	GDGCHC	2 cut(s)	296, 981
SfaNI	GCATC	2 cut(s)	784, 999
SfcI	CTRYAG	1 cut(s)	813
SfuI	TTCGAA	1 cut(s)	1063
SinI	GGWCC	2 cut(s)	23, 1074
SmiI	ATTTAAAT	1 cut(s)	834
SmiMI	CAYNNNNRTG	1 cut(s)	1049
SmlI	CTYRAG	2 cut(s)	872, 946
SmoI	CTYRAG	2 cut(s)	872, 946
Sse9I	AATT	4 cut(s)	709, 807, 907, 1103
SspMI	CTAG	2 cut(s)	9, 227
StyD4I	CCNGG	2 cut(s)	414, 663
StyI	CCWWGG	2 cut(s)	501, 1028
SwaI	ATTTAAAT	1 cut(s)	834
TaaI	ACNGT	1 cut(s)	760
TaqI	TCGA	2 cut(s)	170, 1063
TasI	AATT	4 cut(s)	709, 807, 907, 1103
TfiI	GAWTC	2 cut(s)	474, 525
Tru1I	TTAA	4 cut(s)	248, 660, 833, 1108
Tru9I	TTAA	4 cut(s)	248, 660, 833, 1108
TscAI	CASTG	2 cut(s)	604, 748
TseI	GCWGC	2 cut(s)	575, 638
TspDTI	ATGAA	5 cut(s)	79, 85, 366, 662, 1002
TspGWI	ACGGA	2 cut(s)	1014, 1104
TspRI	CASTG	2 cut(s)	604, 748
VpaK11BI	GGWCC	2 cut(s)	23, 1074
XapI	RAATTY	1 cut(s)	807
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	2 cut(s)	361, 883
XspI	CTAG	2 cut(s)	9, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.