Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006010

Physical Location & Seq

Genomic Coordinates Forward (+)

15879966 .. 15882190

Gene Structure 2225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g19020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTGGGGATGTCCTCTGAGGCAACCTCTTACCCGGCTGAGGCAGAGCTTGAGCTGGGCCTCAGCCTTGCCGTGTGCATGGGGTGAACGTGGTAGAATCTTGACTGCCAAGGACTTCCCTTCTATGATGGTCTCTCACGGAGGCTCTTCAGCTGCTTCTAGGTTCTCTCACAGACCCAATGCTTCTGCTGCTGTTGCTGTTTCTGGGACTAAGAGAGCTGCTGACTCTGTTCCCCAAGAGGGTGGCTCTCCCACTGCTGTAAGTCAGGTTGTGGGATGGCCACCTATAAGTGCTGCAAGGATGAACAGCTTGGTTAGCCAAGCAAAGACTGCAAGGGCTGAAGATGACAAGGCAGTCGGGGACAAATCTAAGGACACTTCGAAGAAGAAGATCAACATCGGTAGTAACACAACTGCGAAAGAGAAGGGGCATCTCGGATTTGTTAAGGTGAACATGGATGGAATTCCTATTGGGAGGAAAGTGGATTTGAATGCTCACTCTTGCTACGAGACTTTGGCTCAAACACTCGAGGAAATGTTTATCAGTCCCACTACAATTATTGGTGGAGACATGGAACAAGCGAAAAATCCCTCAAAGCTTCTGGATGGATCCTCCGAATTTGTGCTCACATATGAAGATAAAGAGGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGAATGTTCCTCAGCTCAGTGAAAAGGCTTCGTATCATGAGGACATCTGAGGCTAATGGTCTTGCTCCAAGATTTCAAGAGAGGAGCGAGAGACAAAGAAACAAGCCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009880 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010051 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

264

Amino Acids

28.56

Weight (kDa)

9.58

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04550 AT1G04550 AT2G33310 AT2G33310 AT2G33310
fragaria_vesca	FvH4_4g04700 FvH4_4g04700 FvH4_4g04700 FvH4_4g04700
malus_domestica	MD13G1222200.v1.1 MD16G1227100.v1.1
prunus_persica	Prupe.1G049200_v2.0.a1
pyrus_communis	pycom13g19660 pycom16g19020
rosa_chinensis	RchiOBHm_Chr4g0395511
rosa_laevigata	RLG00000009617
rosa_multiflora	Rmu_sc0008351.1_g000001 Rmu_sc0025234.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340450
rosa_rugosa	Rorug03G0355500 Rorug03G0355600
rosa_samantha	Rh4AG060700 Rh4AG061700 Rh4BG059700 Rh4CG065400 Rh4DG055600
rosa_wichuraiana	Rw4G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AclWI	GGATC	2 cut(s)	603, 616
AcoI	YGGCCR	1 cut(s)	278
AcsI	RAATTY	2 cut(s)	462, 617
AcuI	CTGAAG	2 cut(s)	132, 360
AfiI	CCNNNNNNNGG	2 cut(s)	39, 239
AgsI	TTSAA	2 cut(s)	490, 755
AluBI	AGCT	7 cut(s)	48, 54, 152, 218, 309, 598, 693
AluI	AGCT	7 cut(s)	48, 54, 152, 218, 309, 598, 693
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	4 cut(s)	136, 503, 561, 763
AlwI	GGATC	2 cut(s)	603, 616
Ama87I	CYCGRG	1 cut(s)	527
AoxI	GGCC	2 cut(s)	57, 278
ApeKI	GCWGC	4 cut(s)	152, 188, 218, 293
ApoI	RAATTY	2 cut(s)	462, 617
AspS9I	GGNCC	1 cut(s)	57
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	95, 460
AsuII	TTCGAA	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	527
BalI	TGGCCA	1 cut(s)	280
BamHI	GGATCC	1 cut(s)	608
Bbv12I	GWGCWC	1 cut(s)	627
BbvCI	CCTCAGC	3 cut(s)	38, 61, 689
BbvI	GCAGC	4 cut(s)	139, 175, 205, 280
BccI	CCATC	4 cut(s)	121, 270, 452, 599
BceAI	ACGGC	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	4 cut(s)	136, 503, 561, 763
BfaI	CTAG	2 cut(s)	159, 790
BisI	GCNGC	4 cut(s)	153, 189, 219, 294
BlsI	GCNGC	4 cut(s)	154, 190, 220, 295
Bme1390I	CCNGG	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	2 cut(s)	439, 645
BplI	GAGNNNNNCTC	4 cut(s)	10, 42, 230, 262
Bpu10I	CCTNAGC	3 cut(s)	38, 61, 689
Bpu14I	TTCGAA	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	34
BsaBI	GATNNNNATC	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	108, 674
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 239
Bse8I	GATNNNNATC	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	108, 674
BseGI	GGATG	6 cut(s)	14, 281, 306, 463, 610, 660
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	2 cut(s)	39, 239
BseMII	CTCAG	6 cut(s)	8, 29, 75, 703, 708, 717
BseRI	GAGGAG	1 cut(s)	775
BseXI	GCAGC	4 cut(s)	139, 175, 205, 280
BseYI	CCCAGC	1 cut(s)	54
BshFI	GGCC	2 cut(s)	59, 280
BsiHKAI	GWGCWC	1 cut(s)	627
BsiHKCI	CYCGRG	1 cut(s)	527
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	3 cut(s)	220, 374, 531
BslI	CCNNNNNNNGG	2 cut(s)	39, 239
BsmAI	GTCTC	4 cut(s)	136, 503, 561, 763
BsmFI	GGGAC	3 cut(s)	220, 374, 531
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	59, 280
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	527
Bsp119I	TTCGAA	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp143I	GATC	2 cut(s)	390, 608
BspANI	GGCC	2 cut(s)	59, 280
BspCNI	CTCAG	6 cut(s)	9, 30, 74, 702, 707, 718
BspHI	TCATGA	1 cut(s)	714
BspLI	GGNNCC	1 cut(s)	610
BspPI	GGATC	2 cut(s)	603, 616
BspQI	GCTCTTC	1 cut(s)	151
BspT104I	TTCGAA	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	108, 674
BssMI	GATC	2 cut(s)	390, 608
BssT1I	CCWWGG	2 cut(s)	108, 674
Bst6I	CTCTTC	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBI	TTCGAA	1 cut(s)	380
BstDEI	CTNAG	8 cut(s)	17, 38, 61, 210, 369, 689, 694, 726
BstF5I	GGATG	6 cut(s)	14, 281, 306, 463, 610, 660
BstKTI	GATC	2 cut(s)	393, 611
BstMAI	GTCTC	4 cut(s)	136, 503, 561, 763
BstMBI	GATC	2 cut(s)	390, 608
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 194, 315, 329
BstSCI	CCNGG	1 cut(s)	32
BstV1I	GCAGC	4 cut(s)	139, 175, 205, 280
BstX2I	RGATCY	1 cut(s)	608
BstXI	CCANNNNNNTGG	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	608
BsuRI	GGCC	2 cut(s)	59, 280
BtsCI	GGATG	6 cut(s)	14, 281, 306, 463, 610, 660
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	252, 702
CciI	TCATGA	1 cut(s)	714
Cfr13I	GGNCC	1 cut(s)	57
CviAII	CATG	4 cut(s)	78, 454, 571, 715
DdeI	CTNAG	8 cut(s)	17, 38, 61, 210, 369, 689, 694, 726
DpnI	GATC	2 cut(s)	392, 610
DpnII	GATC	2 cut(s)	390, 608
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
EaeI	YGGCCR	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	108, 674
Eco31I	GGTCTC	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	132, 360
Eco88I	CYCGRG	1 cut(s)	527
EcoRI	GAATTC	1 cut(s)	462
EcoT14I	CCWWGG	2 cut(s)	108, 674
ErhI	CCWWGG	2 cut(s)	108, 674
FaeI	CATG	4 cut(s)	81, 457, 574, 718
FaiI	YATR	8 cut(s)	79, 125, 287, 455, 572, 631, 633, 716
FaqI	GGGAC	3 cut(s)	220, 374, 531
FatI	CATG	4 cut(s)	77, 453, 570, 714
FauNDI	CATATG	1 cut(s)	631
Fnu4HI	GCNGC	4 cut(s)	153, 189, 219, 294
FokI	GGATG	6 cut(s)	21, 288, 313, 470, 617, 667
Fsp4HI	GCNGC	4 cut(s)	153, 189, 219, 294
FspBI	CTAG	2 cut(s)	159, 790
GluI	GCNGC	4 cut(s)	153, 189, 219, 294
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	59, 280
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	4 cut(s)	81, 457, 574, 718
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	2 cut(s)	96, 224
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	95, 460
Hpy166II	GTNNAC	2 cut(s)	86, 451
Hpy188I	TCNGA	4 cut(s)	18, 437, 616, 727
Hpy188III	TCNNGA	4 cut(s)	100, 602, 715, 755
Hpy8I	GTNNAC	2 cut(s)	86, 451
HpyAV	CCTTC	2 cut(s)	129, 418
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	3 cut(s)	77, 296, 332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 194, 315, 329
HpyF3I	CTNAG	8 cut(s)	17, 38, 61, 210, 369, 689, 694, 726
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	4 cut(s)	81, 457, 574, 718
Kzo9I	GATC	2 cut(s)	390, 608
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	748, 762
LpnPI	CCDG	5 cut(s)	40, 47, 189, 251, 587
Lsp1109I	GCAGC	4 cut(s)	139, 175, 205, 280
LweI	GCATC	2 cut(s)	439, 645
MaeI	CTAG	2 cut(s)	159, 790
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	2 cut(s)	392, 610
MboI	GATC	2 cut(s)	390, 608
MboII	GAAGA	6 cut(s)	138, 353, 394, 397, 400, 647
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	1 cut(s)	627
MlsI	TGGCCA	1 cut(s)	280
MluCI	AATT	3 cut(s)	462, 555, 617
MluNI	TGGCCA	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	643
Mox20I	TGGCCA	1 cut(s)	280
MscI	TGGCCA	1 cut(s)	280
MseI	TTAA	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	280
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	34
Mva1269I	GAATGC	1 cut(s)	496
MwoI	GCNNNNNNNGC	4 cut(s)	188, 194, 315, 329
NciI	CCSGG	1 cut(s)	34
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	2 cut(s)	390, 608
NlaIII	CATG	4 cut(s)	81, 457, 574, 718
NlaIV	GGNNCC	1 cut(s)	610
NspV	TTCGAA	1 cut(s)	380
PaeR7I	CTCGAG	1 cut(s)	527
PagI	TCATGA	1 cut(s)	714
PciSI	GCTCTTC	1 cut(s)	151
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	96
PkrI	GCNGC	4 cut(s)	154, 190, 220, 295
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	1 cut(s)	57
PspXI	VCTCGAGB	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	608
PvuII	CAGCTG	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	4 cut(s)	153, 189, 219, 294
Sau3AI	GATC	2 cut(s)	390, 608
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	627
SfaNI	GCATC	2 cut(s)	439, 645
Sfr274I	CTCGAG	1 cut(s)	527
SfuI	TTCGAA	1 cut(s)	380
SlaI	CTCGAG	1 cut(s)	527
SmlI	CTYRAG	2 cut(s)	49, 527
SmoI	CTYRAG	2 cut(s)	49, 527
Sse9I	AATT	3 cut(s)	462, 555, 617
SspMI	CTAG	2 cut(s)	159, 790
StyD4I	CCNGG	1 cut(s)	32
StyI	CCWWGG	2 cut(s)	108, 674
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	380, 528
TasI	AATT	3 cut(s)	462, 555, 617
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	259, 702
TseI	GCWGC	4 cut(s)	152, 188, 218, 293
TspDTI	ATGAA	2 cut(s)	317, 648
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	2 cut(s)	259, 702
XapI	RAATTY	2 cut(s)	462, 617
XhoI	CTCGAG	1 cut(s)	527
XspI	CTAG	2 cut(s)	159, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.