Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006010

Physical Location & Seq

Genomic Coordinates Forward (+)

23027760 .. 23030866

Gene Structure 3107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1227100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTCTAAGAAAAACGGAGGGTGGGTGGTGAGAGTGCTTGGCGCACTAGCAGACATATGGGCCCCATCATCATCACTGTCTCCACCACCTCTTCAACCTAACACCTCCCTCCATCCCTCCTTCCCTCCCTCCTCCCCCCTCTCTCTCTCTCAAACCCCTTCCGTTTCTCTCTCTTTCTCTCTCTCTCTAAAACCCACACATTCTTCAACCCTCTTTCTCTTGATCAGTTTCATGGAAGGCACACTTGGGTTGCTTGGTGGTGGAGGTGGGTCTTCTGGGGTCTCATCAAACGAGTCGACAATGTCAAAGGCGGAGGTGGTGGCGGTGGAGCAAGACTATGTGGGGATGTCCTCTGAGGCAACCTCTTACCCGGCTGAGGCAGAGCTTGAGCTGGGCCTCAGCCTTGGTGGTGGTGGTGGAGGGAAGCTCGGCAAGCCGTGTGCATGGGGTGAGCGTGGTAGAATCTTGACTGCCAAGGACTTCCCTTCTACGGTGGTTTCTCACGGAGGCTCTTCAGCTGCGTCTAGGTTCTCTCACAGACCCAATGCATCTGCTGCTGTTGCTGTTTCTGGGACTAAGAGAGCAGCTGACTCTGTTCCCCAAGAGGGTGGCTCTCCCACTGCTGTAAGTCAGGTTGTGGGATGGCCACCTATAAGTGCTGCAAGGATGAACAGCTTGGTTAACCAAGCAAAGACTGCAAGGGCTGAAGATGACAAGGCAGTCGGGGACAAATCTAAGGACACATCGAAGAAGAAGATCAACATGGGTAGTAAGACAACTGCGAAAGAGAAAGGGCATCTTGGATTTGTTAAGGTGAACATGGATGGAATTCCTATTGGGAGGAAAGTGGATTTGAATGCTCACTCTTGCTACGAGACTTTGGCTCAAACACTCGAGGAAATGTTTATCAGCCCCACTACAATTATTGGTGGAGACATGGAACAAGCGAAAAAACCCTCAAAGCTTCTGGATGAATCGTCTGAATTTGTGCTCACATATGAAGATAAAGAGGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGAATGTTCCTCAGCTCAGTGAAAAGGCTTCGTATCATGAGGACATCTGAGGCTAATGGTCTTGCTCCAAGATTTCACGAAAGGAGCGAGAGACAAAGAAACAAACCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009880 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010051 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

386

Amino Acids

40.6

Weight (kDa)

8.89

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	165 - 372	2.9e-59	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04550 AT1G04550 AT2G33310 AT2G33310 AT2G33310
fragaria_vesca	FvH4_4g04700 FvH4_4g04700 FvH4_4g04700 FvH4_4g04700
malus_domestica	MD13G1222200.v1.1 MD16G1227100.v1.1
prunus_persica	Prupe.1G049200_v2.0.a1
pyrus_communis	pycom13g19660 pycom16g19020
rosa_chinensis	RchiOBHm_Chr4g0395511
rosa_laevigata	RLG00000009617
rosa_multiflora	Rmu_sc0008351.1_g000001 Rmu_sc0025234.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340450
rosa_rugosa	Rorug03G0355500 Rorug03G0355600
rosa_samantha	Rh4AG060700 Rh4AG061700 Rh4BG059700 Rh4CG065400 Rh4DG055600
rosa_wichuraiana	Rw4G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	719
AccI	GTMKAC	1 cut(s)	296
AciI	CCGC	2 cut(s)	311, 323
AcoI	YGGCCR	1 cut(s)	644
AcsI	RAATTY	2 cut(s)	828, 983
AcuI	CTGAAG	2 cut(s)	498, 726
AfiI	CCNNNNNNNGG	3 cut(s)	376, 490, 605
AgsI	TTSAA	3 cut(s)	95, 207, 856
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AluBI	AGCT	8 cut(s)	385, 391, 427, 518, 587, 675, 964, 1059
AluI	AGCT	8 cut(s)	385, 391, 427, 518, 587, 675, 964, 1059
Alw21I	GWGCWC	1 cut(s)	993
Alw26I	GTCTC	5 cut(s)	84, 286, 869, 927, 1129
Ama87I	CYCGRG	1 cut(s)	893
AoxI	GGCC	3 cut(s)	60, 394, 644
ApaI	GGGCCC	1 cut(s)	64
ApeKI	GCWGC	4 cut(s)	518, 554, 584, 659
ApoI	RAATTY	2 cut(s)	828, 983
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	3 cut(s)	60, 61, 394
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	40, 461, 826
AvaI	CYCGRG	1 cut(s)	893
BaeGI	GKGCMC	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	646
BanII	GRGCYC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	993
BbvCI	CCTCAGC	3 cut(s)	375, 398, 1055
BbvI	GCAGC	4 cut(s)	505, 541, 596, 646
BccI	CCATC	4 cut(s)	73, 120, 636, 818
BceAI	ACGGC	1 cut(s)	421
BclI	TGATCA	1 cut(s)	222
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	5 cut(s)	84, 286, 869, 927, 1129
BfaI	CTAG	3 cut(s)	47, 525, 1156
BisI	GCNGC	4 cut(s)	519, 555, 585, 660
BlsI	GCNGC	4 cut(s)	520, 556, 586, 661
Bme1390I	CCNGG	1 cut(s)	371
BmeT110I	CYCGRG	1 cut(s)	893
BmgT120I	GGNCC	3 cut(s)	60, 61, 394
BmiI	GGNNCC	2 cut(s)	62, 63
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	3 cut(s)	557, 805, 1011
BpiI	GAAGAC	1 cut(s)	264
BplI	GAGNNNNNCTC	6 cut(s)	347, 379, 411, 443, 596, 628
Bpu10I	CCTNAGC	3 cut(s)	375, 398, 1055
BpuEI	CTTGAG	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	3 cut(s)	403, 474, 1040
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	3 cut(s)	376, 490, 605
BseDI	CCNNGG	3 cut(s)	403, 474, 1040
BseGI	GGATG	7 cut(s)	112, 351, 647, 672, 829, 976, 1026
BseLI	CCNNNNNNNGG	3 cut(s)	376, 490, 605
BseMII	CTCAG	6 cut(s)	345, 366, 412, 1069, 1074, 1083
BseRI	GAGGAG	1 cut(s)	121
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	4 cut(s)	505, 541, 596, 646
BseYI	CCCAGC	1 cut(s)	391
BshFI	GGCC	3 cut(s)	62, 396, 646
BsiHKAI	GWGCWC	1 cut(s)	993
BsiHKCI	CYCGRG	1 cut(s)	893
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	2 cut(s)	586, 740
BslI	CCNNNNNNNGG	3 cut(s)	376, 490, 605
BsmAI	GTCTC	5 cut(s)	84, 286, 869, 927, 1129
BsmFI	GGGAC	2 cut(s)	586, 740
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	3 cut(s)	62, 396, 646
Bso31I	GGTCTC	1 cut(s)	286
BsoBI	CYCGRG	1 cut(s)	893
Bsp120I	GGGCCC	1 cut(s)	60
Bsp1286I	GDGCHC	2 cut(s)	64, 993
Bsp143I	GATC	2 cut(s)	222, 756
BspACI	CCGC	2 cut(s)	311, 323
BspANI	GGCC	3 cut(s)	62, 396, 646
BspCNI	CTCAG	6 cut(s)	346, 367, 411, 1068, 1073, 1084
BspHI	TCATGA	1 cut(s)	1080
BspLI	GGNNCC	2 cut(s)	62, 63
BspQI	GCTCTTC	1 cut(s)	517
BspTNI	GGTCTC	1 cut(s)	286
BssECI	CCNNGG	3 cut(s)	403, 474, 1040
BssMI	GATC	2 cut(s)	222, 756
BssT1I	CCWWGG	3 cut(s)	403, 474, 1040
Bst4CI	ACNGT	2 cut(s)	78, 493
Bst6I	CTCTTC	2 cut(s)	96, 517
BstAPI	GCANNNNNTGC	2 cut(s)	554, 695
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	9 cut(s)	6, 354, 375, 398, 576, 735, 1055, 1060, 1092
BstF5I	GGATG	7 cut(s)	112, 351, 647, 672, 829, 976, 1026
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	225, 759
BstMAI	GTCTC	5 cut(s)	84, 286, 869, 927, 1129
BstMBI	GATC	2 cut(s)	222, 756
BstMWI	GCNNNNNNNGC	4 cut(s)	433, 554, 560, 695
BstSCI	CCNGG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	64
BstV1I	GCAGC	4 cut(s)	505, 541, 596, 646
BstV2I	GAAGAC	1 cut(s)	264
BstXI	CCANNNNNNTGG	1 cut(s)	608
BsuRI	GGCC	3 cut(s)	62, 396, 646
BtsCI	GGATG	7 cut(s)	112, 351, 647, 672, 829, 976, 1026
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	3 cut(s)	74, 618, 1068
Cac8I	GCNNGC	1 cut(s)	434
CciI	TCATGA	1 cut(s)	1080
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	3 cut(s)	60, 61, 394
CseI	GACGC	1 cut(s)	510
CviAII	CATG	6 cut(s)	232, 444, 763, 820, 937, 1081
DdeI	CTNAG	9 cut(s)	6, 354, 375, 398, 576, 735, 1055, 1060, 1092
DpnI	GATC	2 cut(s)	224, 758
DpnII	GATC	2 cut(s)	222, 756
DrdI	GACNNNNNNGTC	1 cut(s)	719
DseDI	GACNNNNNNGTC	1 cut(s)	719
EaeI	YGGCCR	1 cut(s)	644
Eam1104I	CTCTTC	2 cut(s)	96, 517
EarI	CTCTTC	2 cut(s)	96, 517
EciI	GGCGGA	1 cut(s)	326
Eco130I	CCWWGG	3 cut(s)	403, 474, 1040
Eco24I	GRGCYC	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	498, 726
Eco88I	CYCGRG	1 cut(s)	893
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	828
EcoT14I	CCWWGG	3 cut(s)	403, 474, 1040
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	64
ErhI	CCWWGG	3 cut(s)	403, 474, 1040
FaeI	CATG	6 cut(s)	235, 447, 766, 823, 940, 1084
FalI	AAGNNNNNCTT	4 cut(s)	228, 260, 783, 815
FaqI	GGGAC	2 cut(s)	586, 740
FatI	CATG	6 cut(s)	231, 443, 762, 819, 936, 1080
FauNDI	CATATG	2 cut(s)	56, 997
FbaI	TGATCA	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	4 cut(s)	519, 555, 585, 660
FokI	GGATG	7 cut(s)	99, 358, 654, 679, 836, 983, 1033
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	4 cut(s)	519, 555, 585, 660
FspBI	CTAG	3 cut(s)	47, 525, 1156
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	4 cut(s)	519, 555, 585, 660
GsaI	CCCAGC	1 cut(s)	395
HaeIII	GGCC	3 cut(s)	62, 396, 646
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	1 cut(s)	510
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	6 cut(s)	235, 447, 766, 823, 940, 1084
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	2 cut(s)	297, 682
HindII	GTYRAC	2 cut(s)	297, 682
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	4 cut(s)	293, 462, 590, 974
HpaI	GTTAAC	1 cut(s)	682
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	3 cut(s)	40, 461, 826
Hpy166II	GTNNAC	3 cut(s)	297, 682, 817
Hpy188I	TCNGA	3 cut(s)	355, 982, 1093
Hpy188III	TCNNGA	5 cut(s)	220, 466, 968, 1081, 1121
Hpy8I	GTNNAC	3 cut(s)	297, 682, 817
HpyAV	CCTTC	4 cut(s)	130, 168, 230, 495
HpyCH4III	ACNGT	2 cut(s)	78, 493
HpyCH4V	TGCA	4 cut(s)	443, 548, 662, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	433, 554, 560, 695
HpyF3I	CTNAG	9 cut(s)	6, 354, 375, 398, 576, 735, 1055, 1060, 1092
Hsp92II	CATG	6 cut(s)	235, 447, 766, 823, 940, 1084
HspAI	GCGC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	222
KspAI	GTTAAC	1 cut(s)	682
Kzo9I	GATC	2 cut(s)	222, 756
LguI	GCTCTTC	1 cut(s)	517
LmnI	GCTCC	3 cut(s)	328, 1114, 1128
LpnPI	CCDG	6 cut(s)	261, 377, 384, 555, 617, 953
Lsp1109I	GCAGC	4 cut(s)	505, 541, 596, 646
LweI	GCATC	3 cut(s)	557, 805, 1011
MaeI	CTAG	3 cut(s)	47, 525, 1156
MalI	GATC	2 cut(s)	224, 758
MboI	GATC	2 cut(s)	222, 756
MboII	GAAGA	9 cut(s)	83, 195, 264, 504, 719, 760, 763, 766, 1013
MhlI	GDGCHC	2 cut(s)	64, 993
MlsI	TGGCCA	1 cut(s)	646
MluCI	AATT	3 cut(s)	828, 921, 983
MluNI	TGGCCA	1 cut(s)	646
MlyI	GAGTC	2 cut(s)	302, 584
MmeI	TCCRAC	1 cut(s)	1009
Mox20I	TGGCCA	1 cut(s)	646
Mph1103I	ATGCAT	1 cut(s)	550
MscI	TGGCCA	1 cut(s)	646
MseI	TTAA	2 cut(s)	681, 810
Msp20I	TGGCCA	1 cut(s)	646
MspA1I	CMGCKG	2 cut(s)	518, 587
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	862
MwoI	GCNNNNNNNGC	4 cut(s)	433, 554, 560, 695
NciI	CCSGG	1 cut(s)	371
NdeI	CATATG	2 cut(s)	56, 997
NdeII	GATC	2 cut(s)	222, 756
NlaIII	CATG	6 cut(s)	235, 447, 766, 823, 940, 1084
NlaIV	GGNNCC	2 cut(s)	62, 63
NmeAIII	GCCGAG	1 cut(s)	408
NsiI	ATGCAT	1 cut(s)	550
PaeR7I	CTCGAG	1 cut(s)	893
PagI	TCATGA	1 cut(s)	1080
PciSI	GCTCTTC	1 cut(s)	517
PcsI	WCGNNNNNNNCGW	1 cut(s)	1128
PctI	GAATGC	1 cut(s)	862
PfeI	GAWTC	2 cut(s)	462, 974
PflFI	GACNNNGTC	1 cut(s)	301
PkrI	GCNGC	4 cut(s)	520, 556, 586, 661
PleI	GAGTC	2 cut(s)	301, 584
PpsI	GAGTC	2 cut(s)	301, 584
PspFI	CCCAGC	1 cut(s)	391
PspN4I	GGNNCC	2 cut(s)	62, 63
PspOMI	GGGCCC	1 cut(s)	60
PspPI	GGNCC	3 cut(s)	60, 61, 394
PspXI	VCTCGAGB	1 cut(s)	893
PsyI	GACNNNGTC	1 cut(s)	301
PvuII	CAGCTG	2 cut(s)	518, 587
SalI	GTCGAC	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	517
SaqAI	TTAA	2 cut(s)	681, 810
SatI	GCNGC	4 cut(s)	519, 555, 585, 660
Sau3AI	GATC	2 cut(s)	222, 756
Sau96I	GGNCC	3 cut(s)	60, 61, 394
SchI	GAGTC	2 cut(s)	302, 584
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	2 cut(s)	64, 993
SfaNI	GCATC	3 cut(s)	557, 805, 1011
Sfr274I	CTCGAG	1 cut(s)	893
SlaI	CTCGAG	1 cut(s)	893
SmlI	CTYRAG	2 cut(s)	386, 893
SmoI	CTYRAG	2 cut(s)	386, 893
Sse9I	AATT	3 cut(s)	828, 921, 983
SsiI	CCGC	2 cut(s)	311, 323
SspMI	CTAG	3 cut(s)	47, 525, 1156
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	3 cut(s)	403, 474, 1040
TaaI	ACNGT	2 cut(s)	78, 493
TaqI	TCGA	3 cut(s)	296, 746, 894
TasI	AATT	3 cut(s)	828, 921, 983
TfiI	GAWTC	2 cut(s)	462, 974
Tru1I	TTAA	2 cut(s)	681, 810
Tru9I	TTAA	2 cut(s)	681, 810
TscAI	CASTG	3 cut(s)	81, 625, 1068
TseI	GCWGC	4 cut(s)	518, 554, 584, 659
TspDTI	ATGAA	4 cut(s)	220, 683, 987, 1014
TspGWI	ACGGA	3 cut(s)	30, 151, 519
TspRI	CASTG	3 cut(s)	81, 625, 1068
Tth111I	GACNNNGTC	1 cut(s)	301
XapI	RAATTY	2 cut(s)	828, 983
XhoI	CTCGAG	1 cut(s)	893
XmiI	GTMKAC	1 cut(s)	296
XspI	CTAG	3 cut(s)	47, 525, 1156
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.