Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006010

Physical Location & Seq

Genomic Coordinates Forward (+)

3457675 .. 3460523

Gene Structure 2849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G049200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGAGGGTGGGTGGTGAGAGTGCAAGGCGCACTAGCAGACATATGGGCCCCATCATCATCACTCTCTCCACCACCTCTTCAACCTACCCCTCCCTCCCTTCCGTCTTTGCTCTGCTTTTGCCTTTGCATTCTTCCCCTTCTTCCTTTGTGGTCCATCTATTATACACAACTCTCAAACAAACAAACAAATTCCCACAACTCTCAAACTCCCAGTCTTTTCTCTCTCAAACCCACAATTTCTTCAACCTTAATTTCTTTGACCTCTTCAAAATCTTCAACCTTTTCTCCTGTCTCTCTCTTGATCAATTCATGGAAGGCACACTTGGGTTACTTGGTGGTGGTGGTGGGTCTTCCGGGGGCTCATCAAATGAGTCAGCAATGTCAAAGGTGGAGGTGGTGGAGCAAGACTACGTGGGGATGTCATCTGAGGCAACCTCATACCCAGCTGAGGCAGAGCTTGAGCTGGGCCTGGGCCTTGGCCTGAGCCTTGGTGGTGGTGGAGGTGGTGGTGCAGGGAAGCAGCCAAAGCCATGTGCATGGGGTGAGCGTGGTAGAATCTTGACTGCTAAAGACTTCCCTTCCATGGTGGGCTCTGCAGTTCCTTCTTCTAGGTTCTCTCACAGACCCAATGCTTCTTCTGCTGTTGCTGTTTCTGGGACTAAGAGAGCTGCTGACTCTGTTTCTCAAGACGGTGGCTCTCCCACTGCTGTAAGTCAAGTTGTGGGATGGCCACCTATTAGTGCTGCAAGGTTGAATAGCTTGGTTAACCAAGCAAAGACTGCAAGGGCTGAAGATGACAAGGAAGACGGGGAAAAATCTAAGGACACTTCTAAGAAGAAGATTAACATGGGTAATAAGACTACTGCTAAAGACAAAGGGCGTCTCGGATTTGTGAAGGTGAACATGGATGGAATTCCTATAGGGAGGAAAGTGGATATGAATGCTCACTCTTGCTATGAGACTTTAGCTCAAACACTGGAGGACATGTTTTTCAGCCCCACTACAGCTATTGGTGGAGACAAGGAACAAGCAACAAAACCCTCTAAGCTTCTGGATGGATCCTCTGAGTTTGTACTCACTTATGAAGATAAAGAAGGAGATTGGATGCTTGTAGGAGATGTTCCTTGGGGGATGTTCATCAGCTCAGTGAAAAGGCTTCGTATCATGAGGACCTCTGAGGCTAATGGACTTGCTCCAAGATTTCAAGAAAGCAGTGAGAGACGAAGAAACAAACCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009880 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010051 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

414

Amino Acids

44.22

Weight (kDa)

8.95

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04550 AT1G04550 AT2G33310 AT2G33310 AT2G33310
fragaria_vesca	FvH4_4g04700 FvH4_4g04700 FvH4_4g04700 FvH4_4g04700
malus_domestica	MD13G1222200.v1.1 MD16G1227100.v1.1
prunus_persica	Prupe.1G049200_v2.0.a1
pyrus_communis	pycom13g19660 pycom16g19020
rosa_chinensis	RchiOBHm_Chr4g0395511
rosa_laevigata	RLG00000009617
rosa_multiflora	Rmu_sc0008351.1_g000001 Rmu_sc0025234.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340450
rosa_rugosa	Rorug03G0355500 Rorug03G0355600
rosa_samantha	Rh4AG060700 Rh4AG061700 Rh4BG059700 Rh4CG065400 Rh4DG055600
rosa_wichuraiana	Rw4G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	1053, 1066
AcoI	YGGCCR	1 cut(s)	728
AcsI	RAATTY	2 cut(s)	188, 912
AcuI	CTGAAG	1 cut(s)	810
AcyI	GRCGYC	1 cut(s)	880
AfaI	GTAC	1 cut(s)	1074
AfiI	CCNNNNNNNGG	2 cut(s)	448, 583
AflIII	ACRYGT	1 cut(s)	984
AgsI	TTSAA	6 cut(s)	81, 244, 268, 277, 754, 1205
AjnI	CCWGG	1 cut(s)	468
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AluBI	AGCT	9 cut(s)	446, 457, 463, 668, 759, 968, 1007, 1048, 1143
AluI	AGCT	9 cut(s)	446, 457, 463, 668, 759, 968, 1007, 1048, 1143
Alw26I	GTCTC	5 cut(s)	296, 887, 953, 1011, 1213
AlwI	GGATC	2 cut(s)	1053, 1066
AoxI	GGCC	5 cut(s)	46, 466, 472, 478, 728
ApaI	GGGCCC	1 cut(s)	50
ApeKI	GCWGC	3 cut(s)	520, 668, 743
ApoI	RAATTY	2 cut(s)	188, 912
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	6 cut(s)	46, 47, 151, 466, 472, 1170
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	3 cut(s)	26, 554, 910
AvaII	GGWCC	2 cut(s)	151, 1170
BaeGI	GKGCMC	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	730
BamHI	GGATCC	1 cut(s)	1058
BanII	GRGCYC	3 cut(s)	50, 362, 593
BbsI	GAAGAC	2 cut(s)	342, 810
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	3 cut(s)	532, 655, 730
BccI	CCATC	5 cut(s)	59, 162, 720, 902, 1049
BciT130I	CCWGG	1 cut(s)	470
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	5 cut(s)	296, 887, 953, 1011, 1213
BfaI	CTAG	3 cut(s)	33, 609, 1240
BfmI	CTRYAG	3 cut(s)	594, 918, 1002
BisI	GCNGC	3 cut(s)	521, 669, 744
BlsI	GCNGC	3 cut(s)	522, 670, 745
Bme1390I	CCNGG	2 cut(s)	355, 470
Bme18I	GGWCC	2 cut(s)	151, 1170
BmgT120I	GGNCC	6 cut(s)	46, 47, 151, 466, 472, 1170
BmiI	GGNNCC	3 cut(s)	48, 49, 1060
BmrFI	CCNGG	2 cut(s)	355, 470
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	1095
BmuI	ACTGGG	1 cut(s)	205
BpiI	GAAGAC	2 cut(s)	342, 810
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpmI	CTGGAG	1 cut(s)	998
Bpu10I	CCTNAGC	2 cut(s)	447, 482
BpuEI	CTTGAG	2 cut(s)	479, 669
BpuMI	CCSGG	1 cut(s)	355
BsaAI	YACGTR	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	1136
BsaHI	GRCGYC	1 cut(s)	880
BsaJI	CCNNGG	6 cut(s)	354, 469, 475, 487, 582, 1124
BsaXI	ACNNNNNCTCC	4 cut(s)	269, 299, 971, 1001
Bsc4I	CCNNNNNNNGG	2 cut(s)	448, 583
Bse1I	ACTGG	2 cut(s)	211, 981
Bse3DI	GCAATG	1 cut(s)	384
Bse8I	GATNNNNATC	1 cut(s)	1136
BseBI	CCWGG	1 cut(s)	470
BseDI	CCNNGG	6 cut(s)	354, 469, 475, 487, 582, 1124
BseGI	GGATG	6 cut(s)	423, 731, 913, 1060, 1110, 1137
BseJI	GATNNNNATC	1 cut(s)	1136
BseLI	CCNNNNNNNGG	2 cut(s)	448, 583
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	6 cut(s)	417, 438, 473, 1056, 1158, 1167
BseNI	ACTGG	2 cut(s)	211, 981
BseSI	GKGCMC	1 cut(s)	50
BseXI	GCAGC	3 cut(s)	532, 655, 730
BseYI	CCCAGC	2 cut(s)	442, 463
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	5 cut(s)	48, 468, 474, 480, 730
BsiSI	CCGG	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	670
BslI	CCNNNNNNNGG	2 cut(s)	448, 583
BsmAI	GTCTC	5 cut(s)	296, 887, 953, 1011, 1213
BsmBI	CGTCTC	2 cut(s)	887, 1213
BsmFI	GGGAC	1 cut(s)	670
BsmI	GAATGC	2 cut(s)	127, 946
BsnI	GGCC	5 cut(s)	48, 468, 474, 480, 730
Bsp120I	GGGCCC	1 cut(s)	46
Bsp1286I	GDGCHC	3 cut(s)	50, 362, 593
Bsp143I	GATC	2 cut(s)	301, 1058
Bsp19I	CCATGG	1 cut(s)	582
BspANI	GGCC	5 cut(s)	48, 468, 474, 480, 730
BspCNI	CTCAG	6 cut(s)	418, 439, 474, 1057, 1157, 1168
BspHI	TCATGA	1 cut(s)	1164
BspLI	GGNNCC	3 cut(s)	48, 49, 1060
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	2 cut(s)	1053, 1066
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	211, 981
BssECI	CCNNGG	6 cut(s)	354, 469, 475, 487, 582, 1124
BssMI	GATC	2 cut(s)	301, 1058
BssNI	GRCGYC	1 cut(s)	880
BssT1I	CCWWGG	4 cut(s)	475, 487, 582, 1124
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	1 cut(s)	692
Bst6I	CTCTTC	2 cut(s)	82, 269
BstACI	GRCGYC	1 cut(s)	880
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstBAI	YACGTR	1 cut(s)	412
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	6 cut(s)	423, 731, 913, 1060, 1110, 1137
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	304, 1061
BstMAI	GTCTC	5 cut(s)	296, 887, 953, 1011, 1213
BstMBI	GATC	2 cut(s)	301, 1058
BstMWI	GCNNNNNNNGC	3 cut(s)	526, 638, 779
BstNI	CCWGG	1 cut(s)	470
BstNSI	RCATGY	1 cut(s)	988
BstSCI	CCNGG	2 cut(s)	353, 468
BstSFI	CTRYAG	3 cut(s)	594, 918, 1002
BstSLI	GKGCMC	1 cut(s)	50
BstV1I	GCAGC	3 cut(s)	532, 655, 730
BstV2I	GAAGAC	2 cut(s)	342, 810
BstX2I	RGATCY	1 cut(s)	1058
BstXI	CCANNNNNNTGG	1 cut(s)	537
BstYI	RGATCY	1 cut(s)	1058
BsuRI	GGCC	5 cut(s)	48, 468, 474, 480, 730
BtgI	CCRYGG	1 cut(s)	582
BtsCI	GGATG	6 cut(s)	423, 731, 913, 1060, 1110, 1137
BtsI	GCAGTG	2 cut(s)	702, 1219
BtsIMutI	CAGTG	4 cut(s)	702, 974, 1152, 1219
CciI	TCATGA	1 cut(s)	1164
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	6 cut(s)	46, 47, 151, 466, 472, 1170
CseI	GACGC	1 cut(s)	869
Csp6I	GTAC	1 cut(s)	1073
CviAII	CATG	8 cut(s)	310, 531, 537, 583, 847, 904, 985, 1165
CviQI	GTAC	1 cut(s)	1073
DpnI	GATC	2 cut(s)	303, 1060
DpnII	GATC	2 cut(s)	301, 1058
EaeI	YGGCCR	1 cut(s)	728
Eam1104I	CTCTTC	2 cut(s)	82, 269
EarI	CTCTTC	2 cut(s)	82, 269
Eco130I	CCWWGG	4 cut(s)	475, 487, 582, 1124
Eco24I	GRGCYC	3 cut(s)	50, 362, 593
Eco47I	GGWCC	2 cut(s)	151, 1170
Eco57I	CTGAAG	1 cut(s)	810
EcoO109I	RGGNCCY	2 cut(s)	47, 1170
EcoRI	GAATTC	1 cut(s)	912
EcoRII	CCWGG	1 cut(s)	468
EcoT14I	CCWWGG	4 cut(s)	475, 487, 582, 1124
EcoT38I	GRGCYC	3 cut(s)	50, 362, 593
ErhI	CCWWGG	4 cut(s)	475, 487, 582, 1124
Esp3I	CGTCTC	2 cut(s)	887, 1213
FaeI	CATG	8 cut(s)	313, 534, 540, 586, 850, 907, 988, 1168
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	1 cut(s)	670
FatI	CATG	8 cut(s)	309, 530, 536, 582, 846, 903, 984, 1164
FauNDI	CATATG	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	521, 669, 744
FokI	GGATG	6 cut(s)	430, 738, 920, 1067, 1117, 1144
FriOI	GRGCYC	3 cut(s)	50, 362, 593
Fsp4HI	GCNGC	3 cut(s)	521, 669, 744
FspBI	CTAG	3 cut(s)	33, 609, 1240
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	3 cut(s)	521, 669, 744
GsaI	CCCAGC	2 cut(s)	446, 467
GsuI	CTGGAG	1 cut(s)	998
HaeIII	GGCC	5 cut(s)	48, 468, 474, 480, 730
HapII	CCGG	1 cut(s)	354
HgaI	GACGC	1 cut(s)	869
HhaI	GCGC	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	880
Hin1II	CATG	8 cut(s)	313, 534, 540, 586, 850, 907, 988, 1168
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HindIII	AAGCTT	1 cut(s)	1046
HinfI	GANTC	3 cut(s)	371, 555, 674
HpaI	GTTAAC	1 cut(s)	766
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	3 cut(s)	26, 554, 910
Hpy166II	GTNNAC	2 cut(s)	766, 901
Hpy188I	TCNGA	4 cut(s)	427, 887, 1066, 1177
Hpy188III	TCNNGA	6 cut(s)	299, 559, 686, 1052, 1165, 1205
Hpy8I	GTNNAC	2 cut(s)	766, 901
HpyAV	CCTTC	7 cut(s)	108, 147, 308, 588, 612, 889, 1088
HpyCH4III	ACNGT	1 cut(s)	692
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	7 cut(s)	23, 127, 512, 536, 596, 746, 782
HpyF10VI	GCNNNNNNNGC	3 cut(s)	526, 638, 779
HpySE526I	ACGT	1 cut(s)	411
Hsp92I	GRCGYC	1 cut(s)	880
Hsp92II	CATG	8 cut(s)	313, 534, 540, 586, 850, 907, 988, 1168
HspAI	GCGC	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	301
KspAI	GTTAAC	1 cut(s)	766
Kzo9I	GATC	2 cut(s)	301, 1058
LmnI	GCTCC	2 cut(s)	400, 1198
Lsp1109I	GCAGC	3 cut(s)	532, 655, 730
LweI	GCATC	1 cut(s)	1095
MaeI	CTAG	3 cut(s)	33, 609, 1240
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	327
MalI	GATC	2 cut(s)	303, 1060
MboI	GATC	2 cut(s)	301, 1058
MflI	RGATCY	1 cut(s)	1058
MhlI	GDGCHC	3 cut(s)	50, 362, 593
MlsI	TGGCCA	1 cut(s)	730
MluCI	AATT	5 cut(s)	188, 235, 250, 305, 912
MluNI	TGGCCA	1 cut(s)	730
MlyI	GAGTC	2 cut(s)	380, 668
Mox20I	TGGCCA	1 cut(s)	730
MscI	TGGCCA	1 cut(s)	730
MseI	TTAA	3 cut(s)	249, 765, 843
MslI	CAYNNNNRTG	1 cut(s)	535
Msp20I	TGGCCA	1 cut(s)	730
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	2 cut(s)	355, 470
Mva1269I	GAATGC	2 cut(s)	127, 946
MvaI	CCWGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	3 cut(s)	526, 638, 779
NciI	CCSGG	1 cut(s)	355
NcoI	CCATGG	1 cut(s)	582
NdeI	CATATG	1 cut(s)	42
NdeII	GATC	2 cut(s)	301, 1058
NlaIII	CATG	8 cut(s)	313, 534, 540, 586, 850, 907, 988, 1168
NlaIV	GGNNCC	3 cut(s)	48, 49, 1060
NspI	RCATGY	1 cut(s)	988
PagI	TCATGA	1 cut(s)	1164
PciI	ACATGT	1 cut(s)	984
PctI	GAATGC	2 cut(s)	127, 946
PfeI	GAWTC	1 cut(s)	555
PkrI	GCNGC	3 cut(s)	522, 670, 745
PleI	GAGTC	2 cut(s)	379, 668
PpsI	GAGTC	2 cut(s)	379, 668
Ppu21I	YACGTR	1 cut(s)	412
PpuMI	RGGWCCY	1 cut(s)	1170
PscI	ACATGT	1 cut(s)	984
Psp5II	RGGWCCY	1 cut(s)	1170
Psp6I	CCWGG	1 cut(s)	468
PspFI	CCCAGC	2 cut(s)	442, 463
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	3 cut(s)	48, 49, 1060
PspOMI	GGGCCC	1 cut(s)	46
PspPI	GGNCC	6 cut(s)	46, 47, 151, 466, 472, 1170
PspPPI	RGGWCCY	1 cut(s)	1170
PsrI	GAACNNNNNNTAC	2 cut(s)	1104, 1136
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	1058
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	1074
RsaNI	GTAC	1 cut(s)	1073
RseI	CAYNNNNRTG	1 cut(s)	535
SaqAI	TTAA	3 cut(s)	249, 765, 843
SatI	GCNGC	3 cut(s)	521, 669, 744
Sau3AI	GATC	2 cut(s)	301, 1058
Sau96I	GGNCC	6 cut(s)	46, 47, 151, 466, 472, 1170
SchI	GAGTC	2 cut(s)	380, 668
ScrFI	CCNGG	2 cut(s)	355, 470
SduI	GDGCHC	3 cut(s)	50, 362, 593
SfaNI	GCATC	1 cut(s)	1095
SfcI	CTRYAG	3 cut(s)	594, 918, 1002
SinI	GGWCC	2 cut(s)	151, 1170
SmiMI	CAYNNNNRTG	1 cut(s)	535
SmlI	CTYRAG	2 cut(s)	458, 684
SmoI	CTYRAG	2 cut(s)	458, 684
Sse9I	AATT	5 cut(s)	188, 235, 250, 305, 912
SspMI	CTAG	3 cut(s)	33, 609, 1240
StyD4I	CCNGG	2 cut(s)	353, 468
StyI	CCWWGG	4 cut(s)	475, 487, 582, 1124
TaaI	ACNGT	1 cut(s)	692
TaiI	ACGT	1 cut(s)	414
TasI	AATT	5 cut(s)	188, 235, 250, 305, 912
TatI	WGTACW	1 cut(s)	1072
TfiI	GAWTC	1 cut(s)	555
Tru1I	TTAA	3 cut(s)	249, 765, 843
Tru9I	TTAA	3 cut(s)	249, 765, 843
TscAI	CASTG	4 cut(s)	709, 981, 1152, 1219
TseI	GCWGC	3 cut(s)	520, 668, 743
TspDTI	ATGAA	4 cut(s)	298, 953, 1098, 1126
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	4 cut(s)	709, 981, 1152, 1219
VpaK11BI	GGWCC	2 cut(s)	151, 1170
XapI	RAATTY	2 cut(s)	188, 912
XceI	RCATGY	1 cut(s)	988
XspI	CTAG	3 cut(s)	33, 609, 1240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.