Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006010

Physical Location & Seq

Genomic Coordinates Forward (+)

8895856 .. 8898131

Gene Structure 2276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00340450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGAAGGCACTCTGGGATTACTTGGAGGTGGGTCTTCTGGGTGCTCAACAAATGAGTCAGCAATGTCAAAGGTGGAACAACAGGTGGTGGAGCAAGACTATGTGGGCATGTCCTCTGAGGTATCTTCATACCCAGCTGAAACTGAGCTTGAACTGGGCCTGAGCCTGGGTGGTTGTTCTGCACAGAAGTCCAAAGCCTGTGCATGGGGCGAGCGTGGAAGAATCTTGACTGCTAAAGACTTCCCTTCCATGGTGTCTCATGGGTCTGCAAGATTCTCACAGAGAGCAAATAATGCTTCTTCTGTTTCTGGAAATAAGCGGGCTGCTGAAGAGGGTGGATCTCCCACTGCTGTAAGTCAAGTTGTGGGATGGCCACCTATAAGTGCTGCAAGGATGAGCAGCTTGGTTAACCAGGCAAAGACTGCAAGGTCTGAAGATGACAAGGCAGATGGGGACAAATCTAAGGACACTTATAAGAAGAAAATGAACACTGGTAATAAGTCAACTGTGAAAGAGAAAGGTCATCTGGGATTTGTGAAGGTCAACATGGATGGAATTCCTATAGGGAGGAAAGTGGATCTAAATGCTCACACTTGCTATGAGACTCTAGCTCAAACACTTGAGGACATGTTCTTCAGCACCACTACAACTGGCAATTCAATCGGTGGAGACAAGGAACAAGCAACAAAACCCTCAAGACTTCTGGATGGATCCTCCGAGTTTGTGCTTACTTATGAAGATAAAGAGGGAGACTGGATGCTTGTTGGAGATGTCCCTTGGAGGATGTTCCTCACCTCGGTGAAAAGGCTTCGAATAATGAGGACCTCTGAGGCCAACGGACTTGGTATGCAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009880 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010051 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

285

Amino Acids

30.57

Weight (kDa)

6.36

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	47 - 282	4.8e-60	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04550 AT1G04550 AT2G33310 AT2G33310 AT2G33310
fragaria_vesca	FvH4_4g04700 FvH4_4g04700 FvH4_4g04700 FvH4_4g04700
malus_domestica	MD13G1222200.v1.1 MD16G1227100.v1.1
prunus_persica	Prupe.1G049200_v2.0.a1
pyrus_communis	pycom13g19660 pycom16g19020
rosa_chinensis	RchiOBHm_Chr4g0395511
rosa_laevigata	RLG00000009617
rosa_multiflora	Rmu_sc0008351.1_g000001 Rmu_sc0025234.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340450
rosa_rugosa	Rorug03G0355500 Rorug03G0355600
rosa_samantha	Rh4AG060700 Rh4AG061700 Rh4BG059700 Rh4CG065400 Rh4DG055600
rosa_wichuraiana	Rw4G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
AasI	GACNNNNNNGTC	1 cut(s)	427
AciI	CCGC	1 cut(s)	319
AclWI	GGATC	4 cut(s)	346, 585, 705, 718
AcoI	YGGCCR	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	555
AcuI	CTGAAG	3 cut(s)	348, 453, 619
AfiI	CCNNNNNNNGG	4 cut(s)	166, 204, 250, 796
AflIII	ACRYGT	1 cut(s)	627
AgsI	TTSAA	2 cut(s)	152, 660
AjnI	CCWGG	2 cut(s)	165, 411
AleI	CACNNNNGTG	1 cut(s)	797
AluBI	AGCT	4 cut(s)	137, 148, 402, 611
AluI	AGCT	4 cut(s)	137, 148, 402, 611
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	4 cut(s)	261, 596, 663, 744
AlwI	GGATC	4 cut(s)	346, 585, 705, 718
AoxI	GGCC	3 cut(s)	157, 371, 831
ApeKI	GCWGC	3 cut(s)	323, 386, 399
ApoI	RAATTY	1 cut(s)	555
AspS9I	GGNCC	2 cut(s)	157, 822
AsuHPI	GGTGA	2 cut(s)	784, 811
AsuII	TTCGAA	1 cut(s)	811
AvaII	GGWCC	1 cut(s)	822
BalI	TGGCCA	1 cut(s)	373
BamHI	GGATCC	1 cut(s)	710
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	3 cut(s)	310, 373, 411
BccI	CCATC	4 cut(s)	363, 443, 545, 701
BcgI	CGANNNNNNTGC	2 cut(s)	643, 677
BciT130I	CCWGG	2 cut(s)	167, 413
BcoDI	GTCTC	4 cut(s)	261, 596, 663, 744
BfaI	CTAG	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	561
BisI	GCNGC	3 cut(s)	324, 387, 400
BlsI	GCNGC	3 cut(s)	325, 388, 401
Bme1390I	CCNGG	2 cut(s)	167, 413
Bme18I	GGWCC	1 cut(s)	822
BmgT120I	GGNCC	2 cut(s)	157, 822
BmiI	GGNNCC	1 cut(s)	712
BmrFI	CCNGG	2 cut(s)	167, 413
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	747
BmuI	ACTGGG	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	811
BpuEI	CTTGAG	2 cut(s)	641, 679
BsaJI	CCNNGG	4 cut(s)	166, 249, 776, 795
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 204, 250, 796
Bse1I	ACTGG	4 cut(s)	159, 496, 655, 758
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	167, 413
BseDI	CCNNGG	4 cut(s)	166, 249, 776, 795
BseGI	GGATG	6 cut(s)	374, 399, 556, 712, 762, 789
BseLI	CCNNNNNNNGG	4 cut(s)	166, 204, 250, 796
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	4 cut(s)	108, 135, 152, 819
BseNI	ACTGG	4 cut(s)	159, 496, 655, 758
BseXI	GCAGC	3 cut(s)	310, 373, 411
BseYI	CCCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	165
BshFI	GGCC	3 cut(s)	159, 373, 833
BsiHKAI	GWGCWC	1 cut(s)	47
BslFI	GGGAC	2 cut(s)	467, 758
BslI	CCNNNNNNNGG	4 cut(s)	166, 204, 250, 796
BsmAI	GTCTC	4 cut(s)	261, 596, 663, 744
BsmFI	GGGAC	2 cut(s)	467, 758
BsnI	GGCC	3 cut(s)	159, 373, 833
Bsp119I	TTCGAA	1 cut(s)	811
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	338, 577, 710
Bsp19I	CCATGG	1 cut(s)	249
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	3 cut(s)	159, 373, 833
BspCNI	CTCAG	4 cut(s)	109, 136, 153, 820
BspLI	GGNNCC	1 cut(s)	712
BspPI	GGATC	4 cut(s)	346, 585, 705, 718
BspT104I	TTCGAA	1 cut(s)	811
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	4 cut(s)	159, 496, 655, 758
BssECI	CCNNGG	4 cut(s)	166, 249, 776, 795
BssMI	GATC	3 cut(s)	338, 577, 710
BssT1I	CCWWGG	2 cut(s)	249, 776
Bst2UI	CCWGG	2 cut(s)	167, 413
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	1 cut(s)	324
BstAPI	GCANNNNNTGC	2 cut(s)	293, 422
BstBI	TTCGAA	1 cut(s)	811
BstC8I	GCNNGC	2 cut(s)	212, 321
BstDEI	CTNAG	5 cut(s)	117, 144, 161, 462, 828
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	6 cut(s)	374, 399, 556, 712, 762, 789
BstKTI	GATC	3 cut(s)	341, 580, 713
BstMAI	GTCTC	4 cut(s)	261, 596, 663, 744
BstMBI	GATC	3 cut(s)	338, 577, 710
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 422
BstNI	CCWGG	2 cut(s)	167, 413
BstNSI	RCATGY	2 cut(s)	112, 631
BstSCI	CCNGG	2 cut(s)	165, 411
BstSFI	CTRYAG	1 cut(s)	561
BstV1I	GCAGC	3 cut(s)	310, 373, 411
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	3 cut(s)	338, 577, 710
BstYI	RGATCY	3 cut(s)	338, 577, 710
BsuRI	GGCC	3 cut(s)	159, 373, 833
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	6 cut(s)	374, 399, 556, 712, 762, 789
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	345, 489
Cac8I	GCNNGC	2 cut(s)	212, 321
Cfr13I	GGNCC	2 cut(s)	157, 822
CviAII	CATG	6 cut(s)	109, 204, 250, 260, 547, 628
DdeI	CTNAG	5 cut(s)	117, 144, 161, 462, 828
DpnI	GATC	3 cut(s)	340, 579, 712
DpnII	GATC	3 cut(s)	338, 577, 710
DrdI	GACNNNNNNGTC	1 cut(s)	427
DseDI	GACNNNNNNGTC	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	371
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	249, 776
Eco47I	GGWCC	1 cut(s)	822
Eco57I	CTGAAG	3 cut(s)	348, 453, 619
EcoO109I	RGGNCCY	1 cut(s)	822
EcoRI	GAATTC	1 cut(s)	555
EcoRII	CCWGG	2 cut(s)	165, 411
EcoT14I	CCWWGG	2 cut(s)	249, 776
ErhI	CCWWGG	2 cut(s)	249, 776
FaeI	CATG	6 cut(s)	112, 207, 253, 263, 550, 631
FaqI	GGGAC	2 cut(s)	467, 758
FatI	CATG	6 cut(s)	108, 203, 249, 259, 546, 627
FauI	CCCGC	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	324, 387, 400
FokI	GGATG	6 cut(s)	381, 406, 563, 719, 769, 796
Fsp4HI	GCNGC	3 cut(s)	324, 387, 400
FspBI	CTAG	1 cut(s)	608
GluI	GCNGC	3 cut(s)	324, 387, 400
GsaI	CCCAGC	1 cut(s)	137
HaeIII	GGCC	3 cut(s)	159, 373, 833
Hin1II	CATG	6 cut(s)	112, 207, 253, 263, 550, 631
HincII	GTYRAC	3 cut(s)	409, 504, 544
HindII	GTYRAC	3 cut(s)	409, 504, 544
HinfI	GANTC	4 cut(s)	56, 222, 273, 604
HpaI	GTTAAC	1 cut(s)	409
HphI	GGTGA	2 cut(s)	784, 811
Hpy166II	GTNNAC	3 cut(s)	409, 504, 544
Hpy188I	TCNGA	4 cut(s)	118, 433, 718, 829
Hpy188III	TCNNGA	4 cut(s)	226, 309, 696, 704
Hpy8I	GTNNAC	3 cut(s)	409, 504, 544
HpyAV	CCTTC	2 cut(s)	255, 532
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4V	TGCA	6 cut(s)	182, 203, 269, 389, 425, 850
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 422
HpyF3I	CTNAG	5 cut(s)	117, 144, 161, 462, 828
Hsp92II	CATG	6 cut(s)	112, 207, 253, 263, 550, 631
KspAI	GTTAAC	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	338, 577, 710
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	3 cut(s)	310, 373, 411
LweI	GCATC	1 cut(s)	747
MaeI	CTAG	1 cut(s)	608
MalI	GATC	3 cut(s)	340, 579, 712
MboI	GATC	3 cut(s)	338, 577, 710
MboII	GAAGA	9 cut(s)	27, 117, 231, 291, 341, 446, 490, 625, 749
MflI	RGATCY	3 cut(s)	338, 577, 710
MhlI	GDGCHC	1 cut(s)	47
MlsI	TGGCCA	1 cut(s)	373
MluCI	AATT	3 cut(s)	555, 655, 851
MluNI	TGGCCA	1 cut(s)	373
MlyI	GAGTC	2 cut(s)	65, 598
MmeI	TCCRAC	1 cut(s)	745
Mox20I	TGGCCA	1 cut(s)	373
MscI	TGGCCA	1 cut(s)	373
MseI	TTAA	2 cut(s)	408, 856
MslI	CAYNNNNRTG	1 cut(s)	797
Msp20I	TGGCCA	1 cut(s)	373
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	167, 413
MvaI	CCWGG	2 cut(s)	167, 413
MwoI	GCNNNNNNNGC	2 cut(s)	293, 422
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	3 cut(s)	338, 577, 710
NlaIII	CATG	6 cut(s)	112, 207, 253, 263, 550, 631
NlaIV	GGNNCC	1 cut(s)	712
NspI	RCATGY	2 cut(s)	112, 631
NspV	TTCGAA	1 cut(s)	811
OliI	CACNNNNGTG	1 cut(s)	797
PciI	ACATGT	1 cut(s)	627
PfeI	GAWTC	2 cut(s)	222, 273
PkrI	GCNGC	3 cut(s)	325, 388, 401
PleI	GAGTC	2 cut(s)	64, 598
PpsI	GAGTC	2 cut(s)	64, 598
PpuMI	RGGWCCY	1 cut(s)	822
PscI	ACATGT	1 cut(s)	627
PsiI	TTATAA	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	822
Psp6I	CCWGG	2 cut(s)	165, 411
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	2 cut(s)	165, 411
PspN4I	GGNNCC	1 cut(s)	712
PspPI	GGNCC	2 cut(s)	157, 822
PspPPI	RGGWCCY	1 cut(s)	822
PsuI	RGATCY	3 cut(s)	338, 577, 710
PvuII	CAGCTG	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	797
SaqAI	TTAA	2 cut(s)	408, 856
SatI	GCNGC	3 cut(s)	324, 387, 400
Sau3AI	GATC	3 cut(s)	338, 577, 710
Sau96I	GGNCC	2 cut(s)	157, 822
SchI	GAGTC	2 cut(s)	65, 598
ScrFI	CCNGG	2 cut(s)	167, 413
SduI	GDGCHC	1 cut(s)	47
SfaNI	GCATC	1 cut(s)	747
SfcI	CTRYAG	1 cut(s)	561
SfuI	TTCGAA	1 cut(s)	811
SinI	GGWCC	1 cut(s)	822
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	2 cut(s)	620, 694
SmoI	CTYRAG	2 cut(s)	620, 694
Sse9I	AATT	3 cut(s)	555, 655, 851
SsiI	CCGC	1 cut(s)	319
SspMI	CTAG	1 cut(s)	608
StyD4I	CCNGG	2 cut(s)	165, 411
StyI	CCWWGG	2 cut(s)	249, 776
TaaI	ACNGT	1 cut(s)	508
TaqI	TCGA	1 cut(s)	811
TasI	AATT	3 cut(s)	555, 655, 851
TfiI	GAWTC	2 cut(s)	222, 273
Tru1I	TTAA	2 cut(s)	408, 856
Tru9I	TTAA	2 cut(s)	408, 856
TscAI	CASTG	2 cut(s)	352, 496
TseI	GCWGC	3 cut(s)	323, 386, 399
TspDTI	ATGAA	3 cut(s)	117, 500, 750
TspGWI	ACGGA	1 cut(s)	852
TspRI	CASTG	2 cut(s)	352, 496
VpaK11BI	GGWCC	1 cut(s)	822
XapI	RAATTY	1 cut(s)	555
XceI	RCATGY	2 cut(s)	112, 631
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.