Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006010

Physical Location & Seq

Genomic Coordinates Reverse (-)

43946543 .. 43947508

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0355600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTATCATAAAATTGGTGGAGGTGAGCTGCCGGATGAGACAACCCTCATTTGTTCTCGAGGTGCAGACAGTGCATTGGAGTTCCTGTCCACCAGCAAATTGGCAAACTTAACTGTAAAGGCAGAGCCGGGTTGTTGCTTGCTTCATAGAAGTGGAAGACTCACAATAGATGGGTGCGTGCTTCAGTGCCAGACAAATCCCCTAGACTTCCTTTCAGTCCCCATTGTGAGTACGGCAAGTGCGCAAACTCTGTTGTCTTCATCGGTGAAGTGTTATAAGGATGGTGTTTCTGTTTCTCGGACTCAAATTGGAGGTGCCAACTGCCAAGGCTGTTTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009880 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010051 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

113

Amino Acids

11.87

Weight (kDa)

6.68

Isoelectric Point (pI)

27.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04550 AT1G04550 AT2G33310 AT2G33310 AT2G33310
fragaria_vesca	FvH4_4g04700 FvH4_4g04700 FvH4_4g04700 FvH4_4g04700
malus_domestica	MD13G1222200.v1.1 MD16G1227100.v1.1
prunus_persica	Prupe.1G049200_v2.0.a1
pyrus_communis	pycom13g19660 pycom16g19020
rosa_chinensis	RchiOBHm_Chr4g0395511
rosa_laevigata	RLG00000009617
rosa_multiflora	Rmu_sc0008351.1_g000001 Rmu_sc0025234.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340450
rosa_rugosa	Rorug03G0355500 Rorug03G0355600
rosa_samantha	Rh4AG060700 Rh4AG061700 Rh4BG059700 Rh4CG065400 Rh4DG055600
rosa_wichuraiana	Rw4G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
Acc16I	TGCGCA	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	337
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	35, 277
AvaI	CYCGRG	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	314
BbsI	GAAGAC	2 cut(s)	163, 249
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	2 cut(s)	164, 275
BceAI	ACGGC	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	203, 340
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	129
BpiI	GAAGAC	2 cut(s)	163, 249
BpuMI	CCSGG	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	2 cut(s)	40, 286
BseXI	GCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	84
BshNI	GGYRCC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	32, 128
BslFI	GGGAC	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	71, 115
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	140, 179
BstF5I	GGATG	2 cut(s)	40, 286
BstHHI	GCGC	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	15
BstV2I	GAAGAC	2 cut(s)	163, 249
BstXI	CCANNNNNNTGG	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	40, 286
BtsIMutI	CAGTG	2 cut(s)	76, 191
Cac8I	GCNNGC	2 cut(s)	140, 179
CfoI	GCGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	231
CviJI	RGCY	3 cut(s)	28, 127, 330
CviKI_1	RGCY	3 cut(s)	28, 127, 330
CviQI	GTAC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
FaiI	YATR	3 cut(s)	9, 147, 276
FaqI	GGGAC	1 cut(s)	203
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	2 cut(s)	47, 293
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	2 cut(s)	203, 340
FspI	TGCGCA	1 cut(s)	243
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	29
HapII	CCGG	2 cut(s)	32, 128
HhaI	GCGC	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	2 cut(s)	159, 301
HpaII	CCGG	2 cut(s)	32, 128
HphI	GGTGA	2 cut(s)	35, 277
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	1 cut(s)	57
Hpy8I	GTNNAC	1 cut(s)	90
HpyCH4III	ACNGT	2 cut(s)	71, 115
HpyCH4V	TGCA	2 cut(s)	65, 74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HspAI	GCGC	1 cut(s)	242
LpnPI	CCDG	5 cut(s)	45, 98, 106, 141, 203
Lsp1109I	GCAGC	1 cut(s)	15
MaeI	CTAG	2 cut(s)	203, 340
MboII	GAAGA	2 cut(s)	168, 249
MluCI	AATT	3 cut(s)	12, 98, 306
MlyI	GAGTC	2 cut(s)	153, 295
MnlI	CCTC	4 cut(s)	14, 53, 56, 305
MseI	TTAA	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	2 cut(s)	32, 128
MspR9I	CCNGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	129
NlaIV	GGNNCC	1 cut(s)	316
NsbI	TGCGCA	1 cut(s)	243
PaeR7I	CTCGAG	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	2 cut(s)	153, 295
PpsI	GAGTC	2 cut(s)	153, 295
PsiI	TTATAA	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	316
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	1 cut(s)	29
SchI	GAGTC	2 cut(s)	153, 295
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	4 cut(s)	25, 30, 64, 316
Sfr274I	CTCGAG	1 cut(s)	57
SlaI	CTCGAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	3 cut(s)	12, 98, 306
SspMI	CTAG	2 cut(s)	203, 340
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	71, 115
TaqI	TCGA	1 cut(s)	58
TasI	AATT	3 cut(s)	12, 98, 306
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	2 cut(s)	76, 191
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	134, 249
TspRI	CASTG	2 cut(s)	76, 191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XhoI	CTCGAG	1 cut(s)	57
XspI	CTAG	2 cut(s)	203, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.