Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006010

Physical Location & Seq

Genomic Coordinates Forward (+)

15600065 .. 15601870

Gene Structure 1806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g19660.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGAAGCCACACTTGGGTTGCTTGGTGGTGGAGGTGGGTCTTCTGGGGTCTCATCGAACGAGTCTACAATGTCAAAAGCGGAGGTGGTGGCGGTGGATCAAGACTATGTGGGGATGTCCTCTGAGGCAACCTCTTACCCTGCTGAGGCAGAGCTTGAGCTGGGCCTCAGCCTTGGTGGCGGAGGGAAGCTCAGCAACCCATGTGCATGGGGTGAGCGTGGTAGAATCTTGACTGCCAAGGACTTTACTTCCATGGTGGTCTCTCACGGCGCCTCTTCAGCTGCTTCTAGGTTCTCTCACAGACCCAATGCTTCTGCTGCTGTTGCTGTTTCTGGGACTAAGAGAGCTGCTGACTCTGCTCCTCAAGAGGGTGGCTCTCCCACTGCTGTAAGTCAGGTTGTGGGATGGCCACCTATAAGTGCTGCGAGGATGAACAGCTTGGTTAACCAAGCAAAGACTGCAAGGGCTGAAGATGATACGGCCGTTGGAGAGAAATCAAAGGACACTTCGAAGAAGAAGATCAACGTCGGTAGTAAGACAACTGTGCAAGAGAAAGGGCATCTCGGATTTGTGAAGGTGAACATGGATGGAATTCCAATCGGGAGGAAAGTGGATTTGAATGCTCACTCTTGCTATGAGACTTTGGCTCAAACACTCGAGGAAATGTTTATCAGCCCCACTACAACTATTGGTGGAGACACGGAACAAGCAAAGAAACCCTCGAAGCTTCTCGACGGATCCTCCGAATTTGTGCTCACATATGAAGATAAAGAGAGAGATTGGATGCTTGTCGGAGATGTTCCTTGGGGGATGTTCCTCGGCTCAGTGAAAAGGCTTCGGATCATGAGGACATCTGAGGCTAATGGTCTTGCTCCAAGATTTCAAGAAAGGAGCGAGAGACAAAGAAACAAACCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009880 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010051 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

307

Amino Acids

32.34

Weight (kDa)

6.93

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04550 AT1G04550 AT2G33310 AT2G33310 AT2G33310
fragaria_vesca	FvH4_4g04700 FvH4_4g04700 FvH4_4g04700 FvH4_4g04700
malus_domestica	MD13G1222200.v1.1 MD16G1227100.v1.1
prunus_persica	Prupe.1G049200_v2.0.a1
pyrus_communis	pycom13g19660 pycom16g19020
rosa_chinensis	RchiOBHm_Chr4g0395511
rosa_laevigata	RLG00000009617
rosa_multiflora	Rmu_sc0008351.1_g000001 Rmu_sc0025234.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340450
rosa_rugosa	Rorug03G0355500 Rorug03G0355600
rosa_samantha	Rh4AG060700 Rh4AG061700 Rh4BG059700 Rh4CG065400 Rh4DG055600
rosa_wichuraiana	Rw4G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	3 cut(s)	80, 92, 180
AclWI	GGATC	4 cut(s)	105, 732, 745, 848
AcoI	YGGCCR	2 cut(s)	407, 480
AcsI	RAATTY	2 cut(s)	591, 746
AcuI	CTGAAG	2 cut(s)	261, 489
AcyI	GRCGYC	1 cut(s)	270
AfiI	CCNNNNNNNGG	3 cut(s)	15, 145, 368
AgsI	TTSAA	2 cut(s)	619, 884
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AluBI	AGCT	7 cut(s)	154, 160, 190, 281, 347, 438, 727
AluI	AGCT	7 cut(s)	154, 160, 190, 281, 347, 438, 727
Alw21I	GWGCWC	1 cut(s)	756
Alw26I	GTCTC	5 cut(s)	55, 265, 632, 690, 892
AlwI	GGATC	4 cut(s)	105, 732, 745, 848
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	3 cut(s)	163, 407, 480
ApeKI	GCWGC	4 cut(s)	281, 317, 347, 422
ApoI	RAATTY	2 cut(s)	591, 746
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	224, 589
AsuII	TTCGAA	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	656
BaeI	ACNNNNGTAYC	2 cut(s)	468, 501
BalI	TGGCCA	1 cut(s)	409
BamHI	GGATCC	1 cut(s)	737
BanI	GGYRCC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	756
BbvCI	CCTCAGC	2 cut(s)	144, 167
BbvI	GCAGC	4 cut(s)	268, 304, 334, 409
BccI	CCATC	2 cut(s)	399, 581
BceAI	ACGGC	3 cut(s)	283, 467, 495
BcoDI	GTCTC	5 cut(s)	55, 265, 632, 690, 892
BfaI	CTAG	2 cut(s)	288, 919
BfoI	RGCGCY	1 cut(s)	273
BglI	GCCNNNNNGGC	1 cut(s)	177
BisI	GCNGC	4 cut(s)	282, 318, 348, 423
BlpI	GCTNAGC	1 cut(s)	191
BlsI	GCNGC	4 cut(s)	283, 319, 349, 424
BmeT110I	CYCGRG	1 cut(s)	656
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	271, 739
BmsI	GCATC	2 cut(s)	568, 774
BpiI	GAAGAC	1 cut(s)	33
BplI	GAGNNNNNCTC	6 cut(s)	116, 148, 174, 206, 359, 391
Bpu10I	CCTNAGC	2 cut(s)	144, 167
Bpu1102I	GCTNAGC	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	509
BpuEI	CTTGAG	2 cut(s)	176, 348
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	2 cut(s)	55, 265
BsaJI	CCNNGG	5 cut(s)	172, 237, 252, 803, 817
BsaXI	ACNNNNNCTCC	2 cut(s)	725, 755
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 145, 368
BseDI	CCNNGG	5 cut(s)	172, 237, 252, 803, 817
BseGI	GGATG	6 cut(s)	120, 410, 435, 592, 789, 816
BseLI	CCNNNNNNNGG	3 cut(s)	15, 145, 368
BseMII	CTCAG	6 cut(s)	114, 135, 181, 205, 837, 846
BseRI	GAGGAG	1 cut(s)	351
BseX3I	CGGCCG	1 cut(s)	480
BseXI	GCAGC	4 cut(s)	268, 304, 334, 409
BseYI	CCCAGC	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	483
BshFI	GGCC	3 cut(s)	165, 409, 482
BshNI	GGYRCC	1 cut(s)	269
BsiEI	CGRYCG	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	756
BsiHKCI	CYCGRG	1 cut(s)	656
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	3 cut(s)	15, 145, 368
BsmAI	GTCTC	5 cut(s)	55, 265, 632, 690, 892
BsmFI	GGGAC	1 cut(s)	349
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	3 cut(s)	165, 409, 482
Bso31I	GGTCTC	2 cut(s)	55, 265
BsoBI	CYCGRG	1 cut(s)	656
Bsp119I	TTCGAA	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	756
Bsp143I	GATC	4 cut(s)	97, 519, 737, 840
Bsp1720I	GCTNAGC	1 cut(s)	191
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	3 cut(s)	80, 92, 180
BspANI	GGCC	3 cut(s)	165, 409, 482
BspCNI	CTCAG	6 cut(s)	115, 136, 180, 204, 836, 847
BspHI	TCATGA	1 cut(s)	843
BspLI	GGNNCC	2 cut(s)	271, 739
BspPI	GGATC	4 cut(s)	105, 732, 745, 848
BspT104I	TTCGAA	1 cut(s)	509
BspT107I	GGYRCC	1 cut(s)	269
BspTNI	GGTCTC	2 cut(s)	55, 265
BssECI	CCNNGG	5 cut(s)	172, 237, 252, 803, 817
BssMI	GATC	4 cut(s)	97, 519, 737, 840
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	4 cut(s)	172, 237, 252, 803
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	1 cut(s)	280
BstACI	GRCGYC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstBI	TTCGAA	1 cut(s)	509
BstDEI	CTNAG	7 cut(s)	123, 144, 167, 191, 339, 823, 855
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	6 cut(s)	120, 410, 435, 592, 789, 816
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	4 cut(s)	100, 522, 740, 843
BstMAI	GTCTC	5 cut(s)	55, 265, 632, 690, 892
BstMBI	GATC	4 cut(s)	97, 519, 737, 840
BstMCI	CGRYCG	1 cut(s)	483
BstMWI	GCNNNNNNNGC	6 cut(s)	177, 278, 317, 323, 356, 458
BstV1I	GCAGC	4 cut(s)	268, 304, 334, 409
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	737
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	737
BstZI	CGGCCG	1 cut(s)	480
BsuRI	GGCC	3 cut(s)	165, 409, 482
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	6 cut(s)	120, 410, 435, 592, 789, 816
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	381, 831
CciI	TCATGA	1 cut(s)	843
CfoI	GCGC	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	163
CviAII	CATG	5 cut(s)	201, 207, 253, 583, 844
DdeI	CTNAG	7 cut(s)	123, 144, 167, 191, 339, 823, 855
DinI	GGCGCC	1 cut(s)	271
DpnI	GATC	4 cut(s)	99, 521, 739, 842
DpnII	GATC	4 cut(s)	97, 519, 737, 840
EaeI	YGGCCR	2 cut(s)	407, 480
EagI	CGGCCG	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	195
EclXI	CGGCCG	1 cut(s)	480
Eco130I	CCWWGG	4 cut(s)	172, 237, 252, 803
Eco31I	GGTCTC	2 cut(s)	55, 265
Eco52I	CGGCCG	1 cut(s)	480
Eco57I	CTGAAG	2 cut(s)	261, 489
Eco88I	CYCGRG	1 cut(s)	656
EcoRI	GAATTC	1 cut(s)	591
EcoT14I	CCWWGG	4 cut(s)	172, 237, 252, 803
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
ErhI	CCWWGG	4 cut(s)	172, 237, 252, 803
FaeI	CATG	5 cut(s)	204, 210, 256, 586, 847
FalI	AAGNNNNNCTT	1 cut(s)	29
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	5 cut(s)	200, 206, 252, 582, 843
FauNDI	CATATG	1 cut(s)	760
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	4 cut(s)	282, 318, 348, 423
FokI	GGATG	6 cut(s)	127, 417, 442, 599, 796, 823
Fsp4HI	GCNGC	4 cut(s)	282, 318, 348, 423
FspBI	CTAG	2 cut(s)	288, 919
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	4 cut(s)	282, 318, 348, 423
GsaI	CCCAGC	1 cut(s)	164
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	165, 409, 482
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	5 cut(s)	204, 210, 256, 586, 847
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	3 cut(s)	62, 225, 353
HpaI	GTTAAC	1 cut(s)	445
HphI	GGTGA	2 cut(s)	224, 589
Hpy166II	GTNNAC	3 cut(s)	66, 445, 580
Hpy188I	TCNGA	6 cut(s)	124, 566, 745, 794, 840, 856
Hpy188III	TCNNGA	7 cut(s)	101, 229, 365, 601, 731, 844, 884
Hpy8I	GTNNAC	3 cut(s)	66, 445, 580
Hpy99I	CGWCG	2 cut(s)	530, 737
HpyAV	CCTTC	1 cut(s)	568
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	3 cut(s)	206, 461, 547
HpyF10VI	GCNNNNNNNGC	6 cut(s)	177, 278, 317, 323, 356, 458
HpyF3I	CTNAG	7 cut(s)	123, 144, 167, 191, 339, 823, 855
HpySE526I	ACGT	1 cut(s)	525
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	5 cut(s)	204, 210, 256, 586, 847
HspAI	GCGC	1 cut(s)	270
KasI	GGCGCC	1 cut(s)	269
KspAI	GTTAAC	1 cut(s)	445
Kzo9I	GATC	4 cut(s)	97, 519, 737, 840
LmnI	GCTCC	3 cut(s)	364, 877, 891
LpnPI	CCDG	5 cut(s)	30, 146, 153, 318, 380
Lsp1109I	GCAGC	4 cut(s)	268, 304, 334, 409
LweI	GCATC	2 cut(s)	568, 774
MaeI	CTAG	2 cut(s)	288, 919
MaeII	ACGT	1 cut(s)	525
MalI	GATC	4 cut(s)	99, 521, 739, 842
MboI	GATC	4 cut(s)	97, 519, 737, 840
MboII	GAAGA	7 cut(s)	33, 267, 482, 523, 526, 529, 776
MflI	RGATCY	1 cut(s)	737
MhlI	GDGCHC	1 cut(s)	756
MlsI	TGGCCA	1 cut(s)	409
MluCI	AATT	2 cut(s)	591, 746
MluNI	TGGCCA	1 cut(s)	409
Mly113I	GGCGCC	1 cut(s)	270
MlyI	GAGTC	2 cut(s)	71, 347
MmeI	TCCRAC	2 cut(s)	466, 772
Mox20I	TGGCCA	1 cut(s)	409
MscI	TGGCCA	1 cut(s)	409
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	205
Msp20I	TGGCCA	1 cut(s)	409
MspA1I	CMGCKG	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	625
MwoI	GCNNNNNNNGC	6 cut(s)	177, 278, 317, 323, 356, 458
NarI	GGCGCC	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	252
NdeI	CATATG	1 cut(s)	760
NdeII	GATC	4 cut(s)	97, 519, 737, 840
NlaIII	CATG	5 cut(s)	204, 210, 256, 586, 847
NlaIV	GGNNCC	2 cut(s)	271, 739
NmeAIII	GCCGAG	1 cut(s)	798
NspV	TTCGAA	1 cut(s)	509
PaeR7I	CTCGAG	1 cut(s)	656
PagI	TCATGA	1 cut(s)	843
PcsI	WCGNNNNNNNCGW	1 cut(s)	741
PctI	GAATGC	1 cut(s)	625
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	4 cut(s)	283, 319, 349, 424
PleI	GAGTC	2 cut(s)	70, 347
PluTI	GGCGCC	1 cut(s)	273
PpsI	GAGTC	2 cut(s)	70, 347
PspFI	CCCAGC	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	271, 739
PspPI	GGNCC	1 cut(s)	163
PspXI	VCTCGAGB	1 cut(s)	656
PsuI	RGATCY	1 cut(s)	737
PvuII	CAGCTG	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	4 cut(s)	282, 318, 348, 423
Sau3AI	GATC	4 cut(s)	97, 519, 737, 840
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	2 cut(s)	71, 347
SduI	GDGCHC	1 cut(s)	756
SfaNI	GCATC	2 cut(s)	568, 774
SfoI	GGCGCC	1 cut(s)	271
Sfr274I	CTCGAG	1 cut(s)	656
SfuI	TTCGAA	1 cut(s)	509
SlaI	CTCGAG	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	205
SmlI	CTYRAG	3 cut(s)	155, 363, 656
SmoI	CTYRAG	3 cut(s)	155, 363, 656
Sse9I	AATT	2 cut(s)	591, 746
SsiI	CCGC	3 cut(s)	80, 92, 180
SspDI	GGCGCC	1 cut(s)	269
SspMI	CTAG	2 cut(s)	288, 919
StyI	CCWWGG	4 cut(s)	172, 237, 252, 803
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	5 cut(s)	56, 509, 657, 722, 732
TasI	AATT	2 cut(s)	591, 746
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	388, 831
TseI	GCWGC	4 cut(s)	281, 317, 347, 422
TspDTI	ATGAA	2 cut(s)	446, 777
TspGWI	ACGGA	2 cut(s)	716, 750
TspRI	CASTG	2 cut(s)	388, 831
XapI	RAATTY	2 cut(s)	591, 746
XhoI	CTCGAG	1 cut(s)	656
XmiI	GTMKAC	1 cut(s)	65
XspI	CTAG	2 cut(s)	288, 919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.