Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006010

Physical Location & Seq

Genomic Coordinates Forward (+)

4094818 .. 4097928

Gene Structure 3111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAATCATGTCAAGGAAAAAACTCTAGGGTGGGTGGTGAGTGAGAGTGCTATGCGCACTAGCAGACATATGGGCCCATCATCATCACTCTCTCCACCATCTCCCCCCAACCTACCTCTTTGCTTTGCCTTTGCCTCCTTTCATTTTCATTCTTGTCTATTCATCTCTATACTACTACTACTTCTTCCCCTCAAACTCCCACAAAGACAAACCCCATTCTTCTCTCTCTCTCTCTCTCTCTCTCTCGATCGACTCCCAACTTCTTCTTTCAACTTGTTTAGAATCTCTCTTCTTGTTTCAATGGAAGGCACTCTGGGTTTACTTGGAGGTGGGTCTTCTGGGTGCTGTACAAATGAGTCAGCAATGTCAAAGGTGGATCATCAGGTGGTGGAGCACATGTCCTCTGAGGTGTCTTCATACCCAGCTGAGGCTGAGCTTGAGCTTGGCCTGGGCCTGAGCCTTGGCACTGGTAGTGGTGGTGGTTCTGCACAGAAGCCTAAAGGCTGTGCTTGGGGTGAGCGTGGAAGAATCTTGACCGCTAAAGACTTCCCTTCCATGGTGTCTCATGGGTCTGCAAGATTCTCACAGAGAGCAAATAATGCTTCTTCTGTTTCTGGAAATAAGAGGGCTGCTGAAGAGGGTGGATCTCCTACTGCTGTAAGTCAAGTTGTGGGATGGCCACCTATAAGTGCTGCAAGGATGAACAGCTTGGTTAACCAGGCAAAGGCTGCAAGGTCTGAAGATGACAAGACAGATGGGGACAAATCTAAGGACACTTTTAAGAAGAAAATCAACACTGGTAATAACAAGTCAACTGTGAAAGAAAAAGGTCATCTGGGATTTGTGAAGGTCAACATGGATGGGATTCCTATAGGGAGGAAAGTGGATTTAAATGCTCACACTTGCTATGAGACTTTAGCCCAAACACTTGAGGAAATGTTCTTCAGCACCACTTCAAATGTCAATTCAATTGCTGGAGACAAGGAACAAGCAACAAAACCCTCAAGGCTTCTGGATGGATCCTCTGAGTTTGTGCTCACTTATGAAGATAAAGAGGGTGATTGGATGCTTGTTGGAGATGTCCCTTGGAGGATGTTCCACACCTCAGTTAAAAGGCTTCGAATCATGAGGACCTCTGAGGCCAATGGACTTGCTCCAAGATTTCAAGAAAGGGGTGAGAGACTAAGAAACAAACCTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009880 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010051 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

401

Amino Acids

43.38

Weight (kDa)

9.15

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	146 - 387	2.7e-61	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04550 AT1G04550 AT2G33310 AT2G33310 AT2G33310
fragaria_vesca	FvH4_4g04700 FvH4_4g04700 FvH4_4g04700 FvH4_4g04700
malus_domestica	MD13G1222200.v1.1 MD16G1227100.v1.1
prunus_persica	Prupe.1G049200_v2.0.a1
pyrus_communis	pycom13g19660 pycom16g19020
rosa_chinensis	RchiOBHm_Chr4g0395511
rosa_laevigata	RLG00000009617
rosa_multiflora	Rmu_sc0008351.1_g000001 Rmu_sc0025234.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340450
rosa_rugosa	Rorug03G0355500 Rorug03G0355600
rosa_samantha	Rh4AG060700 Rh4AG061700 Rh4BG059700 Rh4CG065400 Rh4DG055600
rosa_wichuraiana	Rw4G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	56
AciI	CCGC	1 cut(s)	537
AclWI	GGATC	4 cut(s)	384, 652, 1014, 1027
AcoI	YGGCCR	1 cut(s)	677
AcuI	CTGAAG	3 cut(s)	654, 759, 928
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	3 cut(s)	427, 556, 724
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	5 cut(s)	271, 300, 957, 969, 1166
AjnI	CCWGG	2 cut(s)	447, 717
AluBI	AGCT	4 cut(s)	425, 436, 442, 708
AluI	AGCT	4 cut(s)	425, 436, 442, 708
Alw21I	GWGCWC	2 cut(s)	396, 1038
Alw26I	GTCTC	4 cut(s)	567, 905, 972, 1174
AlwI	GGATC	4 cut(s)	384, 652, 1014, 1027
AoxI	GGCC	5 cut(s)	73, 445, 451, 677, 1140
ApaI	GGGCCC	1 cut(s)	77
ApeKI	GCWGC	3 cut(s)	629, 692, 728
AspLEI	GCGC	1 cut(s)	57
AspS9I	GGNCC	4 cut(s)	73, 74, 451, 1131
AsuHPI	GGTGA	4 cut(s)	49, 527, 1070, 1187
AsuII	TTCGAA	1 cut(s)	1120
AvaII	GGWCC	1 cut(s)	1131
BaeGI	GKGCMC	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	679
BamHI	GGATCC	1 cut(s)	1019
BanII	GRGCYC	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	327, 405
Bbv12I	GWGCWC	2 cut(s)	396, 1038
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	3 cut(s)	616, 679, 715
BccI	CCATC	6 cut(s)	85, 106, 669, 749, 854, 1010
BciT130I	CCWGG	2 cut(s)	449, 719
BcoDI	GTCTC	4 cut(s)	567, 905, 972, 1174
BfaI	CTAG	2 cut(s)	26, 60
BfmI	CTRYAG	1 cut(s)	870
BisI	GCNGC	3 cut(s)	630, 693, 729
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	3 cut(s)	631, 694, 730
Bme1390I	CCNGG	2 cut(s)	449, 719
Bme18I	GGWCC	1 cut(s)	1131
BmgT120I	GGNCC	4 cut(s)	73, 74, 451, 1131
BmiI	GGNNCC	2 cut(s)	75, 1021
BmrFI	CCNGG	2 cut(s)	449, 719
BmsI	GCATC	1 cut(s)	1056
BpiI	GAAGAC	2 cut(s)	327, 405
BpmI	CTGGAG	1 cut(s)	996
Bpu10I	CCTNAGC	2 cut(s)	426, 455
Bpu1102I	GCTNAGC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	1120
BpuEI	CTTGAG	3 cut(s)	458, 950, 988
BsaJI	CCNNGG	4 cut(s)	448, 460, 555, 1085
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	3 cut(s)	427, 556, 724
Bse1I	ACTGG	2 cut(s)	472, 802
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	449, 719
BseDI	CCNNGG	4 cut(s)	448, 460, 555, 1085
BseGI	GGATG	6 cut(s)	680, 705, 865, 1021, 1071, 1098
BseLI	CCNNNNNNNGG	3 cut(s)	427, 556, 724
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	7 cut(s)	396, 417, 423, 446, 1017, 1119, 1128
BseNI	ACTGG	2 cut(s)	472, 802
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	3 cut(s)	616, 679, 715
BseYI	CCCAGC	1 cut(s)	421
BsgI	GTGCAG	1 cut(s)	471
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	5 cut(s)	75, 447, 453, 679, 1142
BsiEI	CGRYCG	1 cut(s)	250
BsiHKAI	GWGCWC	2 cut(s)	396, 1038
BslFI	GGGAC	2 cut(s)	773, 1067
BslI	CCNNNNNNNGG	3 cut(s)	427, 556, 724
BsmAI	GTCTC	4 cut(s)	567, 905, 972, 1174
BsmFI	GGGAC	2 cut(s)	773, 1067
BsnI	GGCC	5 cut(s)	75, 447, 453, 679, 1142
Bsp119I	TTCGAA	1 cut(s)	1120
Bsp120I	GGGCCC	1 cut(s)	73
Bsp1286I	GDGCHC	3 cut(s)	77, 396, 1038
Bsp1407I	TGTACA	1 cut(s)	347
Bsp143I	GATC	4 cut(s)	247, 376, 644, 1019
Bsp1720I	GCTNAGC	1 cut(s)	432
Bsp19I	CCATGG	1 cut(s)	555
BspACI	CCGC	1 cut(s)	537
BspANI	GGCC	5 cut(s)	75, 447, 453, 679, 1142
BspCNI	CTCAG	7 cut(s)	397, 418, 424, 447, 1018, 1118, 1129
BspHI	TCATGA	1 cut(s)	1125
BspLI	GGNNCC	2 cut(s)	75, 1021
BspPI	GGATC	4 cut(s)	384, 652, 1014, 1027
BspT104I	TTCGAA	1 cut(s)	1120
BsrDI	GCAATG	1 cut(s)	369
BsrGI	TGTACA	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	472, 802
BssECI	CCNNGG	4 cut(s)	448, 460, 555, 1085
BssMI	GATC	4 cut(s)	247, 376, 644, 1019
BssT1I	CCWWGG	3 cut(s)	460, 555, 1085
Bst2UI	CCWGG	2 cut(s)	449, 719
Bst4CI	ACNGT	1 cut(s)	817
Bst6I	CTCTTC	2 cut(s)	294, 630
BstAPI	GCANNNNNTGC	2 cut(s)	599, 728
BstAUI	TGTACA	1 cut(s)	347
BstBI	TTCGAA	1 cut(s)	1120
BstDEI	CTNAG	9 cut(s)	405, 426, 432, 455, 768, 1026, 1105, 1137, 1184
BstDSI	CCRYGG	1 cut(s)	555
BstF5I	GGATG	6 cut(s)	680, 705, 865, 1021, 1071, 1098
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	4 cut(s)	250, 379, 647, 1022
BstMAI	GTCTC	4 cut(s)	567, 905, 972, 1174
BstMBI	GATC	4 cut(s)	247, 376, 644, 1019
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	599, 728
BstNI	CCWGG	2 cut(s)	449, 719
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	447, 717
BstSFI	CTRYAG	1 cut(s)	870
BstSLI	GKGCMC	1 cut(s)	77
BstV1I	GCAGC	3 cut(s)	616, 679, 715
BstV2I	GAAGAC	2 cut(s)	327, 405
BstX2I	RGATCY	2 cut(s)	644, 1019
BstYI	RGATCY	2 cut(s)	644, 1019
BsuRI	GGCC	5 cut(s)	75, 447, 453, 679, 1142
BtgI	CCRYGG	1 cut(s)	555
BtsCI	GGATG	6 cut(s)	680, 705, 865, 1021, 1071, 1098
BtsIMutI	CAGTG	2 cut(s)	465, 795
CciI	TCATGA	1 cut(s)	1125
CfoI	GCGC	1 cut(s)	57
Cfr13I	GGNCC	4 cut(s)	73, 74, 451, 1131
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	6 cut(s)	8, 397, 556, 566, 856, 1126
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	9 cut(s)	405, 426, 432, 455, 768, 1026, 1105, 1137, 1184
DpnI	GATC	4 cut(s)	249, 378, 646, 1021
DpnII	GATC	4 cut(s)	247, 376, 644, 1019
DraI	TTTAAA	1 cut(s)	891
EaeI	YGGCCR	1 cut(s)	677
Eam1104I	CTCTTC	2 cut(s)	294, 630
EarI	CTCTTC	2 cut(s)	294, 630
Eco130I	CCWWGG	3 cut(s)	460, 555, 1085
Eco24I	GRGCYC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	1131
Eco57I	CTGAAG	3 cut(s)	654, 759, 928
EcoO109I	RGGNCCY	1 cut(s)	1131
EcoRII	CCWGG	2 cut(s)	447, 717
EcoT14I	CCWWGG	3 cut(s)	460, 555, 1085
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	3 cut(s)	460, 555, 1085
FaeI	CATG	6 cut(s)	11, 400, 559, 569, 859, 1129
FaqI	GGGAC	2 cut(s)	773, 1067
FatI	CATG	6 cut(s)	7, 396, 555, 565, 855, 1125
FauNDI	CATATG	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	630, 693, 729
FokI	GGATG	6 cut(s)	687, 712, 872, 1028, 1078, 1105
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	3 cut(s)	630, 693, 729
FspAI	RTGCGCAY	1 cut(s)	56
FspBI	CTAG	2 cut(s)	26, 60
FspI	TGCGCA	1 cut(s)	56
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	3 cut(s)	630, 693, 729
GsaI	CCCAGC	1 cut(s)	425
GsuI	CTGGAG	1 cut(s)	996
HaeIII	GGCC	5 cut(s)	75, 447, 453, 679, 1142
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	6 cut(s)	11, 400, 559, 569, 859, 1129
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HincII	GTYRAC	3 cut(s)	715, 813, 853
HindII	GTYRAC	3 cut(s)	715, 813, 853
HinfI	GANTC	8 cut(s)	4, 252, 282, 356, 528, 579, 865, 1122
HpaI	GTTAAC	1 cut(s)	715
HphI	GGTGA	4 cut(s)	49, 527, 1070, 1187
Hpy166II	GTNNAC	4 cut(s)	320, 715, 813, 853
Hpy188I	TCNGA	4 cut(s)	406, 739, 1027, 1138
Hpy188III	TCNNGA	6 cut(s)	245, 532, 615, 1013, 1126, 1166
Hpy8I	GTNNAC	4 cut(s)	320, 715, 813, 853
HpyAV	CCTTC	3 cut(s)	299, 561, 841
HpyCH4III	ACNGT	1 cut(s)	817
HpyCH4V	TGCA	4 cut(s)	488, 575, 695, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	599, 728
HpyF3I	CTNAG	9 cut(s)	405, 426, 432, 455, 768, 1026, 1105, 1137, 1184
Hsp92II	CATG	6 cut(s)	11, 400, 559, 569, 859, 1129
HspAI	GCGC	1 cut(s)	55
KspAI	GTTAAC	1 cut(s)	715
Kzo9I	GATC	4 cut(s)	247, 376, 644, 1019
LmnI	GCTCC	2 cut(s)	391, 1159
Lsp1109I	GCAGC	3 cut(s)	616, 679, 715
LweI	GCATC	1 cut(s)	1056
MaeI	CTAG	2 cut(s)	26, 60
MalI	GATC	4 cut(s)	249, 378, 646, 1021
MboI	GATC	4 cut(s)	247, 376, 644, 1019
MfeI	CAATTG	1 cut(s)	969
MflI	RGATCY	2 cut(s)	644, 1019
MhlI	GDGCHC	3 cut(s)	77, 396, 1038
MlsI	TGGCCA	1 cut(s)	679
MluCI	AATT	2 cut(s)	964, 969
MluNI	TGGCCA	1 cut(s)	679
MlyI	GAGTC	2 cut(s)	246, 365
MmeI	TCCRAC	1 cut(s)	1054
Mox20I	TGGCCA	1 cut(s)	679
MscI	TGGCCA	1 cut(s)	679
MseI	TTAA	4 cut(s)	714, 780, 890, 1110
Msp20I	TGGCCA	1 cut(s)	679
MspA1I	CMGCKG	1 cut(s)	425
MspR9I	CCNGG	2 cut(s)	449, 719
MunI	CAATTG	1 cut(s)	969
MvaI	CCWGG	2 cut(s)	449, 719
MwoI	GCNNNNNNNGC	2 cut(s)	599, 728
NcoI	CCATGG	1 cut(s)	555
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	4 cut(s)	247, 376, 644, 1019
NlaIII	CATG	6 cut(s)	11, 400, 559, 569, 859, 1129
NlaIV	GGNNCC	2 cut(s)	75, 1021
NsbI	TGCGCA	1 cut(s)	56
NspI	RCATGY	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	1120
PagI	TCATGA	1 cut(s)	1125
PciI	ACATGT	1 cut(s)	396
PfeI	GAWTC	6 cut(s)	4, 282, 528, 579, 865, 1122
PkrI	GCNGC	3 cut(s)	631, 694, 730
Ple19I	CGATCG	1 cut(s)	250
PleI	GAGTC	2 cut(s)	246, 364
PpsI	GAGTC	2 cut(s)	246, 364
PpuMI	RGGWCCY	1 cut(s)	1131
PscI	ACATGT	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	1131
Psp6I	CCWGG	2 cut(s)	447, 717
PspFI	CCCAGC	1 cut(s)	421
PspGI	CCWGG	2 cut(s)	447, 717
PspN4I	GGNNCC	2 cut(s)	75, 1021
PspOMI	GGGCCC	1 cut(s)	73
PspPI	GGNCC	4 cut(s)	73, 74, 451, 1131
PspPPI	RGGWCCY	1 cut(s)	1131
PsuI	RGATCY	2 cut(s)	644, 1019
PvuI	CGATCG	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SaqAI	TTAA	4 cut(s)	714, 780, 890, 1110
SatI	GCNGC	3 cut(s)	630, 693, 729
Sau3AI	GATC	4 cut(s)	247, 376, 644, 1019
Sau96I	GGNCC	4 cut(s)	73, 74, 451, 1131
SchI	GAGTC	2 cut(s)	246, 365
ScrFI	CCNGG	2 cut(s)	449, 719
SduI	GDGCHC	3 cut(s)	77, 396, 1038
SfaNI	GCATC	1 cut(s)	1056
SfcI	CTRYAG	1 cut(s)	870
SfuI	TTCGAA	1 cut(s)	1120
SinI	GGWCC	1 cut(s)	1131
SmiI	ATTTAAAT	1 cut(s)	891
SmlI	CTYRAG	3 cut(s)	437, 929, 1003
SmoI	CTYRAG	3 cut(s)	437, 929, 1003
Sse9I	AATT	2 cut(s)	964, 969
SsiI	CCGC	1 cut(s)	537
SspMI	CTAG	2 cut(s)	26, 60
StyD4I	CCNGG	2 cut(s)	447, 717
StyI	CCWWGG	3 cut(s)	460, 555, 1085
SwaI	ATTTAAAT	1 cut(s)	891
TaaI	ACNGT	1 cut(s)	817
TaqI	TCGA	3 cut(s)	246, 250, 1120
TasI	AATT	2 cut(s)	964, 969
TatI	WGTACW	1 cut(s)	347
TfiI	GAWTC	6 cut(s)	4, 282, 528, 579, 865, 1122
Tru1I	TTAA	4 cut(s)	714, 780, 890, 1110
Tru9I	TTAA	4 cut(s)	714, 780, 890, 1110
TscAI	CASTG	2 cut(s)	472, 802
TseI	GCWGC	3 cut(s)	629, 692, 728
TspDTI	ATGAA	7 cut(s)	17, 131, 137, 151, 405, 716, 1059
TspRI	CASTG	2 cut(s)	472, 802
VpaK11BI	GGWCC	1 cut(s)	1131
XceI	RCATGY	1 cut(s)	400
XspI	CTAG	2 cut(s)	26, 60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.