Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006010

Physical Location & Seq

Genomic Coordinates Reverse (-)

10158385 .. 10160286

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G005040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAAGGCACTCTGGGATTACTTGGAGGTGGGTCTTCTGGGTGCTCAACAAATGAGTCAGCAATGTCAAAGGTGGAACAACAGGTGGTGGAGCAAGACTATGTGGGCATGTCCTCTGAGGTATCTTCATACCCAGCTGAAACTGAGCTTGAACTGGGCCTGAGCCTGGGTGGTGGTGGTTCTGCACAGAAGTCCAAAGCCTGTGCATGGGGCGAGCGTGGAAGAATCTTGACTGCTAAAGACTTTCCTTCCATGGTGTCTCATGGGTCTGCAAGATTCTCACAGAGAGCAAATAATGCTTCTTCTGTTTCTGGAAATAAGAGGGCTGCTGAAGAGGGTGGATCTCCCACTGCTGTAAGTCAAGTTGTGGGATGGCCACCTATAAGTGCTGCAAGGATGAACAGCTTGGTTAACCAGGCAAAGACTGCAAGGTCTGAAGATGACAAGGCAGATGGGGACAATTCTAAGGACACTTACAAGAAGAAAATCAACACTGGTAATAAGTCAACTGTGAAAGAGAAAGGGCATCTGGGATTTGTGAAGGTTAACATGGATGGAATTCCTATAGGGAGGAAAGTGGATTTAAATGCTCACACTTGCTATGAGACTTTAGCTCAAACACTTGAGGACATGTTCTTCAGCACCACTACAACTGGCAATTCAATCGGTGGAGACAAGGAACAAGCAACAAAACCCTCAAGGCTTCTGGATGGATCCTCCGAGTTTGTGCTCACTTATGAAGATAAAGACGGAGACTGGATGCTTGTTGGAGATGTCCCTTGGAGGATGTTCCTCACCTCGGTGAAAAGGCTTCGAATAATGAGGACCTCTGAGGCCAACGGACTTGCTCCAAGATTTCAAGAAAGGAGTGAGAGACAAAGAAACAGACCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009880 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010051 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

298

Amino Acids

32.12

Weight (kDa)

7.67

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	47 - 285	1.7e-63	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04550 AT1G04550 AT2G33310 AT2G33310 AT2G33310
fragaria_vesca	FvH4_4g04700 FvH4_4g04700 FvH4_4g04700 FvH4_4g04700
malus_domestica	MD13G1222200.v1.1 MD16G1227100.v1.1
prunus_persica	Prupe.1G049200_v2.0.a1
pyrus_communis	pycom13g19660 pycom16g19020
rosa_chinensis	RchiOBHm_Chr4g0395511
rosa_laevigata	RLG00000009617
rosa_multiflora	Rmu_sc0008351.1_g000001 Rmu_sc0025234.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340450
rosa_rugosa	Rorug03G0355500 Rorug03G0355600
rosa_samantha	Rh4AG060700 Rh4AG061700 Rh4BG059700 Rh4CG065400 Rh4DG055600
rosa_wichuraiana	Rw4G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
AclWI	GGATC	3 cut(s)	349, 708, 721
AcoI	YGGCCR	1 cut(s)	374
AcsI	RAATTY	1 cut(s)	558
AcuI	CTGAAG	3 cut(s)	351, 456, 622
AfiI	CCNNNNNNNGG	3 cut(s)	166, 207, 799
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	3 cut(s)	152, 663, 860
AjnI	CCWGG	2 cut(s)	165, 414
AleI	CACNNNNGTG	1 cut(s)	800
AluBI	AGCT	4 cut(s)	137, 148, 405, 614
AluI	AGCT	4 cut(s)	137, 148, 405, 614
Alw21I	GWGCWC	2 cut(s)	47, 732
Alw26I	GTCTC	5 cut(s)	264, 599, 666, 747, 868
AlwI	GGATC	3 cut(s)	349, 708, 721
AoxI	GGCC	3 cut(s)	157, 374, 834
ApeKI	GCWGC	2 cut(s)	326, 389
ApoI	RAATTY	1 cut(s)	558
AspS9I	GGNCC	2 cut(s)	157, 825
AsuHPI	GGTGA	2 cut(s)	787, 814
AsuII	TTCGAA	1 cut(s)	814
AvaII	GGWCC	1 cut(s)	825
BalI	TGGCCA	1 cut(s)	376
BamHI	GGATCC	1 cut(s)	713
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	47, 732
BbvI	GCAGC	2 cut(s)	313, 376
BccI	CCATC	4 cut(s)	366, 446, 548, 704
BcgI	CGANNNNNNTGC	2 cut(s)	646, 680
BciT130I	CCWGG	2 cut(s)	167, 416
BcoDI	GTCTC	5 cut(s)	264, 599, 666, 747, 868
BfmI	CTRYAG	1 cut(s)	564
BisI	GCNGC	2 cut(s)	327, 390
BlsI	GCNGC	2 cut(s)	328, 391
Bme1390I	CCNGG	2 cut(s)	167, 416
Bme18I	GGWCC	1 cut(s)	825
BmgT120I	GGNCC	2 cut(s)	157, 825
BmiI	GGNNCC	1 cut(s)	715
BmrFI	CCNGG	2 cut(s)	167, 416
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	2 cut(s)	535, 750
BmuI	ACTGGG	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	814
BpuEI	CTTGAG	2 cut(s)	644, 682
BsaJI	CCNNGG	4 cut(s)	166, 252, 779, 798
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 207, 799
Bse1I	ACTGG	4 cut(s)	159, 499, 658, 761
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	167, 416
BseDI	CCNNGG	4 cut(s)	166, 252, 779, 798
BseGI	GGATG	6 cut(s)	377, 402, 559, 715, 765, 792
BseLI	CCNNNNNNNGG	3 cut(s)	166, 207, 799
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	4 cut(s)	108, 135, 152, 822
BseNI	ACTGG	4 cut(s)	159, 499, 658, 761
BseXI	GCAGC	2 cut(s)	313, 376
BseYI	CCCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	159, 376, 836
BsiHKAI	GWGCWC	2 cut(s)	47, 732
BslFI	GGGAC	2 cut(s)	470, 761
BslI	CCNNNNNNNGG	3 cut(s)	166, 207, 799
BsmAI	GTCTC	5 cut(s)	264, 599, 666, 747, 868
BsmFI	GGGAC	2 cut(s)	470, 761
BsnI	GGCC	3 cut(s)	159, 376, 836
Bsp119I	TTCGAA	1 cut(s)	814
Bsp1286I	GDGCHC	2 cut(s)	47, 732
Bsp143I	GATC	2 cut(s)	341, 713
Bsp19I	CCATGG	1 cut(s)	252
BspANI	GGCC	3 cut(s)	159, 376, 836
BspCNI	CTCAG	4 cut(s)	109, 136, 153, 823
BspLI	GGNNCC	1 cut(s)	715
BspPI	GGATC	3 cut(s)	349, 708, 721
BspT104I	TTCGAA	1 cut(s)	814
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	4 cut(s)	159, 499, 658, 761
BssECI	CCNNGG	4 cut(s)	166, 252, 779, 798
BssMI	GATC	2 cut(s)	341, 713
BssT1I	CCWWGG	2 cut(s)	252, 779
Bst2UI	CCWGG	2 cut(s)	167, 416
Bst4CI	ACNGT	1 cut(s)	511
Bst6I	CTCTTC	1 cut(s)	327
BstAPI	GCANNNNNTGC	2 cut(s)	296, 425
BstBI	TTCGAA	1 cut(s)	814
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	5 cut(s)	117, 144, 161, 465, 831
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	6 cut(s)	377, 402, 559, 715, 765, 792
BstKTI	GATC	2 cut(s)	344, 716
BstMAI	GTCTC	5 cut(s)	264, 599, 666, 747, 868
BstMBI	GATC	2 cut(s)	341, 713
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 425
BstNI	CCWGG	2 cut(s)	167, 416
BstNSI	RCATGY	2 cut(s)	112, 634
BstSCI	CCNGG	2 cut(s)	165, 414
BstSFI	CTRYAG	1 cut(s)	564
BstV1I	GCAGC	2 cut(s)	313, 376
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	2 cut(s)	341, 713
BstYI	RGATCY	2 cut(s)	341, 713
BsuRI	GGCC	3 cut(s)	159, 376, 836
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	6 cut(s)	377, 402, 559, 715, 765, 792
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	348, 492
Cac8I	GCNNGC	1 cut(s)	215
Cfr13I	GGNCC	2 cut(s)	157, 825
CviAII	CATG	6 cut(s)	109, 207, 253, 263, 550, 631
DdeI	CTNAG	5 cut(s)	117, 144, 161, 465, 831
DpnI	GATC	2 cut(s)	343, 715
DpnII	GATC	2 cut(s)	341, 713
DraI	TTTAAA	1 cut(s)	585
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
EaeI	YGGCCR	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	252, 779
Eco47I	GGWCC	1 cut(s)	825
Eco57I	CTGAAG	3 cut(s)	351, 456, 622
EcoO109I	RGGNCCY	1 cut(s)	825
EcoRI	GAATTC	1 cut(s)	558
EcoRII	CCWGG	2 cut(s)	165, 414
EcoT14I	CCWWGG	2 cut(s)	252, 779
ErhI	CCWWGG	2 cut(s)	252, 779
FaeI	CATG	6 cut(s)	112, 210, 256, 266, 553, 634
FaqI	GGGAC	2 cut(s)	470, 761
FatI	CATG	6 cut(s)	108, 206, 252, 262, 549, 630
Fnu4HI	GCNGC	2 cut(s)	327, 390
FokI	GGATG	6 cut(s)	384, 409, 566, 722, 772, 799
Fsp4HI	GCNGC	2 cut(s)	327, 390
GluI	GCNGC	2 cut(s)	327, 390
GsaI	CCCAGC	1 cut(s)	137
HaeIII	GGCC	3 cut(s)	159, 376, 836
Hin1II	CATG	6 cut(s)	112, 210, 256, 266, 553, 634
HincII	GTYRAC	3 cut(s)	412, 507, 547
HindII	GTYRAC	3 cut(s)	412, 507, 547
HinfI	GANTC	3 cut(s)	56, 225, 276
HpaI	GTTAAC	2 cut(s)	412, 547
HphI	GGTGA	2 cut(s)	787, 814
Hpy166II	GTNNAC	3 cut(s)	412, 507, 547
Hpy188I	TCNGA	4 cut(s)	118, 436, 721, 832
Hpy188III	TCNNGA	4 cut(s)	229, 312, 707, 860
Hpy8I	GTNNAC	3 cut(s)	412, 507, 547
HpyAV	CCTTC	2 cut(s)	258, 535
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4V	TGCA	5 cut(s)	185, 206, 272, 392, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 425
HpyF3I	CTNAG	5 cut(s)	117, 144, 161, 465, 831
Hsp92II	CATG	6 cut(s)	112, 210, 256, 266, 553, 634
KspAI	GTTAAC	2 cut(s)	412, 547
Kzo9I	GATC	2 cut(s)	341, 713
LmnI	GCTCC	2 cut(s)	91, 853
Lsp1109I	GCAGC	2 cut(s)	313, 376
LweI	GCATC	2 cut(s)	535, 750
MalI	GATC	2 cut(s)	343, 715
MboI	GATC	2 cut(s)	341, 713
MboII	GAAGA	9 cut(s)	27, 117, 234, 294, 344, 449, 493, 628, 752
MflI	RGATCY	2 cut(s)	341, 713
MhlI	GDGCHC	2 cut(s)	47, 732
MlsI	TGGCCA	1 cut(s)	376
MluCI	AATT	3 cut(s)	460, 558, 658
MluNI	TGGCCA	1 cut(s)	376
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	748
Mox20I	TGGCCA	1 cut(s)	376
MscI	TGGCCA	1 cut(s)	376
MseI	TTAA	4 cut(s)	411, 546, 584, 895
MslI	CAYNNNNRTG	1 cut(s)	800
Msp20I	TGGCCA	1 cut(s)	376
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	167, 416
MvaI	CCWGG	2 cut(s)	167, 416
MwoI	GCNNNNNNNGC	2 cut(s)	296, 425
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	2 cut(s)	341, 713
NlaIII	CATG	6 cut(s)	112, 210, 256, 266, 553, 634
NlaIV	GGNNCC	1 cut(s)	715
NspI	RCATGY	2 cut(s)	112, 634
NspV	TTCGAA	1 cut(s)	814
OliI	CACNNNNGTG	1 cut(s)	800
PciI	ACATGT	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	225, 276
PkrI	GCNGC	2 cut(s)	328, 391
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PpuMI	RGGWCCY	1 cut(s)	825
PscI	ACATGT	1 cut(s)	630
Psp5II	RGGWCCY	1 cut(s)	825
Psp6I	CCWGG	2 cut(s)	165, 414
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	2 cut(s)	165, 414
PspN4I	GGNNCC	1 cut(s)	715
PspPI	GGNCC	2 cut(s)	157, 825
PspPPI	RGGWCCY	1 cut(s)	825
PsuI	RGATCY	2 cut(s)	341, 713
PvuII	CAGCTG	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	800
SaqAI	TTAA	4 cut(s)	411, 546, 584, 895
SatI	GCNGC	2 cut(s)	327, 390
Sau3AI	GATC	2 cut(s)	341, 713
Sau96I	GGNCC	2 cut(s)	157, 825
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	167, 416
SduI	GDGCHC	2 cut(s)	47, 732
SfaNI	GCATC	2 cut(s)	535, 750
SfcI	CTRYAG	1 cut(s)	564
SfuI	TTCGAA	1 cut(s)	814
SinI	GGWCC	1 cut(s)	825
SmiI	ATTTAAAT	1 cut(s)	585
SmiMI	CAYNNNNRTG	1 cut(s)	800
SmlI	CTYRAG	2 cut(s)	623, 697
SmoI	CTYRAG	2 cut(s)	623, 697
Sse9I	AATT	3 cut(s)	460, 558, 658
StyD4I	CCNGG	2 cut(s)	165, 414
StyI	CCWWGG	2 cut(s)	252, 779
SwaI	ATTTAAAT	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	511
TaqI	TCGA	1 cut(s)	814
TasI	AATT	3 cut(s)	460, 558, 658
TfiI	GAWTC	2 cut(s)	225, 276
Tru1I	TTAA	4 cut(s)	411, 546, 584, 895
Tru9I	TTAA	4 cut(s)	411, 546, 584, 895
TscAI	CASTG	2 cut(s)	355, 499
TseI	GCWGC	2 cut(s)	326, 389
TspDTI	ATGAA	3 cut(s)	117, 413, 753
TspGWI	ACGGA	2 cut(s)	765, 855
TspRI	CASTG	2 cut(s)	355, 499
VpaK11BI	GGWCC	1 cut(s)	825
XapI	RAATTY	1 cut(s)	558
XceI	RCATGY	2 cut(s)	112, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.