AT1G06143
BHLH Family

Pentatricopeptide repeat domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
1867037 .. 1868905
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06143.1

Sequence Viewer

Length: 1734 bp
ATGAATGCTTTCGCCAATGTGCATAGTCTTCGGGTACCTTCTCACCATCTTCGAGATTTCTCAGCGTCACTCTCTCTGGCTCCTCCAAATTTAAAGAAAATCATCAAGCAATGCTCGACGCCCAAGCTTCTGGAGTCTGCTTTAGCCGCCATGATCAAGACGAGCCTAAACCAAGACTGTCGCTTAATGAACCAATTCATCACTGCCTGCACTTCCTTTAAACGTCTTGACCTCGCAGTTTCCACCATGACCCAGATGCAGGAACCTAATGTTTTCGTCTACAACGCGTTGTTTAAAGGCTTCGTTACTTGTTCTCACCCGATTCGATCTCTGGAATTGTATGTTCGTATGCTCAGGGACTCGGTTTCTCCATCAAGCTACACGTACTCTTCACTAGTAAAGGCGTCTTCTTTCGCTTCTAGGTTTGGGGAATCACTCCAGGCGCACATCTGGAAATTTGGATTTGGTTTCCATGTTAAAATTCAGACGACTCTTATTGATTTTTATTCAGCCACTGGTAGAATCAGGGAAGCCAGGAAAGTGTTTGATGAAATGCCTGAAAGAGATGATATTGCTTGGACCACAATGGTTTCTGCTTATCGTCGGGTTTTGGATATGGACTCTGCGAATTCTTTAGCTAACCAAATGTCGGAGAAGAATGAGGCTACGTCGAACTGTTTGATTAATGGATATATGGGATTAGGCAATCTGGAACAAGCAGAGTCATTGTTTAATCAGATGCCTGTGAAGGACATAATCTCATGGACCACTATGATCAAGGGTTACTCGCAGAATAAAAGATATAGAGAAGCAATTGCAGTGTTCTACAAAATGATGGAGGAGGGCATCATTCCTGATGAGGTTACTATGTCAACTGTTATTTCAGCTTGTGCCCATCTCGGCGTGCTGGAAATAGGTAAGGAGGTTCATATGTACACGTTACAGAACGGTTTTGTTCTTGATGTCTACATTGGTTCTGCACTGGTAGATATGTATTCCAAATGTGGTAGCTTAGAGCGGGCGCTTCTGGTGTTCTTCAATTTGCCCAAAAAGAATCTATTTTGTTGGAATTCGATCATTGAAGGACTGGCGGCTCATGGTTTTGCACAAGAAGCACTGAAAATGTTTGCCAAGATGGAGATGGAGTCGGTGAAACCTAACGCAGTCACTTTTGTGAGTGTTTTTACTGCGTGTACTCACGCAGGTCTTGTTGACGAAGGTCGGAGGATATATCGCAGCATGATTGATGACTATTCCATTGTCTCTAATGTTGAACATTACGGAGGCATGGTTCATCTATTCAGCAAAGCTGGGTTGATCTATGAGGCTCTTGAATTGATTGGAAATATGGAATTTGAACCAAATGCGGTTATCTGGGGGGCCTTGCTTGATGGGTGCAGAATTCACAAGAATCTCGTGATAGCTGAAATAGCGTTTAACAAACTGATGGTTTTGGAGCCGATGAATAGTGGGTATTATTTCCTTTTAGTTAGCATGTATGCAGAACAAAACAGGTGGAGAGATGTTGCAGAGATTAGGGGAAGGATGAGAGAGTTGGGTATAGAAAAGATATGTCCTGGGACAAGTTCGATTCGGATAGATAAACGAGACCATCTGTTTGCTGCAGCTGATAAGTCTCACTCAGCTTCAGATGAGGTTTGCTTGCTGCTTGATGAGATATATGATCAGATGGGATTAGCTGGATATGTGCAGGAAACTGAGAATGTATATTAA

Protein Analysis

577

Amino Acids

65.07

Weight (kDa)

6.23

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 89 - 135 3.9e-08 PPR repeat family
PPR_2 PF13041 250 - 299 3.1e-13 PPR repeat family
PPR PF01535 253 - 283 2.2e-08 PPR repeat
PPR_2 PF13041 352 - 399 7.6e-10 PPR repeat family
E_motif PF20431 469 - 531 3.6e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1193
Acc65I GGTACC 1 cut(s) 34
AccB1I GGYRCC 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 1018
AccI GTMKAC 2 cut(s) 279, 966
AccII CGCG 1 cut(s) 287
AciI CCGC 4 cut(s) 147, 1018, 1091, 1367
AcsI RAATTY 7 cut(s) 88, 455, 480, 628, 1069, 1352, 1401
AcuI CTGAAG 1 cut(s) 1632
AcyI GRCGYC 2 cut(s) 119, 404
AfaI GTAC 4 cut(s) 36, 386, 935, 1195
AfiI CCNNNNNNNGG 2 cut(s) 259, 649
AflIII ACRYGT 3 cut(s) 285, 381, 936
AgsI TTSAA 5 cut(s) 1039, 1082, 1274, 1334, 1358
AhlI ACTAGT 1 cut(s) 394
AjnI CCWGG 3 cut(s) 438, 533, 1576
AleI CACNNNNGTG 1 cut(s) 1172
AloI GAACNNNNNNTCC 2 cut(s) 1275, 1307
Alw26I GTCTC 3 cut(s) 1267, 1602, 1641
AlwNI CAGNNNCTG 1 cut(s) 515
AoxI GGCC 1 cut(s) 1380
ApeKI GCWGC 4 cut(s) 1236, 1622, 1625, 1666
ApoI RAATTY 7 cut(s) 88, 455, 480, 628, 1069, 1352, 1401
ArsI GACNNNNNNTTYG 2 cut(s) 1601, 1633
AseI ATTAAT 1 cut(s) 684
Asp700I GAANNNNTTC 2 cut(s) 8, 194
Asp718I GGTACC 1 cut(s) 34
AspLEI GCGC 2 cut(s) 445, 1024
AspS9I GGNCC 3 cut(s) 579, 765, 1380
AsuHPI GGTGA 3 cut(s) 35, 308, 1162
AvaII GGWCC 2 cut(s) 579, 765
BaeGI GKGCMC 1 cut(s) 895
BanI GGYRCC 1 cut(s) 34
BauI CACGAG 1 cut(s) 1415
BbsI GAAGAC 2 cut(s) 20, 399
BbvI GCAGC 4 cut(s) 1248, 1609, 1637, 1653
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 3 cut(s) 440, 535, 1578
BclI TGATCA 3 cut(s) 153, 774, 1684
BcoDI GTCTC 3 cut(s) 1267, 1602, 1641
BcuI ACTAGT 1 cut(s) 394
BfaI CTAG 2 cut(s) 395, 420
BfmI CTRYAG 1 cut(s) 1623
BfoI RGCGCY 1 cut(s) 1025
BfuAI ACCTGC 1 cut(s) 1193
BisI GCNGC 6 cut(s) 147, 1092, 1237, 1623, 1626, 1667
BlsI GCNGC 6 cut(s) 148, 1093, 1238, 1624, 1627, 1668
Bme1390I CCNGG 3 cut(s) 440, 535, 1578
Bme18I GGWCC 2 cut(s) 579, 765
BmgT120I GGNCC 3 cut(s) 579, 765, 1380
BmiI GGNNCC 5 cut(s) 36, 81, 264, 1381, 1458
BmrFI CCNGG 3 cut(s) 440, 535, 1578
BmsI GCATC 3 cut(s) 246, 729, 855
BoxI GACNNNNGTC 1 cut(s) 1218
BpiI GAAGAC 2 cut(s) 20, 399
BpmI CTGGAG 2 cut(s) 152, 422
Bpu10I CCTNAGC 1 cut(s) 353
BsaAI YACGTR 1 cut(s) 384
BsaHI GRCGYC 2 cut(s) 119, 404
BsaI GGTCTC 1 cut(s) 1602
BsaJI CCNNGG 1 cut(s) 1577
BsaXI ACNNNNNCTCC 4 cut(s) 1130, 1160, 1275, 1305
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 649
Bse1I ACTGG 3 cut(s) 520, 987, 1092
Bse3DI GCAATG 1 cut(s) 116
BseBI CCWGG 3 cut(s) 440, 535, 1578
BseDI CCNNGG 1 cut(s) 1577
BseGI GGATG 1 cut(s) 1551
BseLI CCNNNNNNNGG 2 cut(s) 259, 649
BseMI GCAATG 1 cut(s) 116
BseMII CTCAG 4 cut(s) 75, 367, 1656, 1710
BseNI ACTGG 3 cut(s) 520, 987, 1092
BseRI GAGGAG 2 cut(s) 72, 854
BseSI GKGCMC 1 cut(s) 895
BseXI GCAGC 4 cut(s) 1248, 1609, 1637, 1653
BseYI CCCAGC 1 cut(s) 1310
BsgI GTGCAG 4 cut(s) 193, 963, 1417, 1730
Bsh1236I CGCG 1 cut(s) 287
BshFI GGCC 1 cut(s) 1382
BshNI GGYRCC 1 cut(s) 34
BslFI GGGAC 2 cut(s) 371, 1594
BslI CCNNNNNNNGG 2 cut(s) 259, 649
BsmAI GTCTC 3 cut(s) 1267, 1602, 1641
BsmFI GGGAC 2 cut(s) 371, 1594
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 1382
Bso31I GGTCTC 1 cut(s) 1602
Bsp1286I GDGCHC 1 cut(s) 895
Bsp1407I TGTACA 1 cut(s) 933
Bsp143I GATC 6 cut(s) 153, 326, 774, 1074, 1317, 1684
BspACI CCGC 4 cut(s) 147, 1018, 1091, 1367
BspANI GGCC 1 cut(s) 1382
BspCNI CTCAG 4 cut(s) 74, 366, 1655, 1711
BspFNI CGCG 1 cut(s) 287
BspLI GGNNCC 5 cut(s) 36, 81, 264, 1381, 1458
BspMAI CTGCAG 1 cut(s) 1627
BspMI ACCTGC 1 cut(s) 1193
BspT107I GGYRCC 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 1602
BsrBI CCGCTC 1 cut(s) 1018
BsrDI GCAATG 1 cut(s) 116
BsrGI TGTACA 1 cut(s) 933
BsrI ACTGG 3 cut(s) 520, 987, 1092
BssECI CCNNGG 1 cut(s) 1577
BssMI GATC 6 cut(s) 153, 326, 774, 1074, 1317, 1684
BssNI GRCGYC 2 cut(s) 119, 404
BssSI CACGAG 1 cut(s) 1415
Bst2BI CACGAG 1 cut(s) 1415
Bst2UI CCWGG 3 cut(s) 440, 535, 1578
Bst4CI ACNGT 4 cut(s) 179, 677, 877, 950
Bst6I CTCTTC 1 cut(s) 394
BstACI GRCGYC 2 cut(s) 119, 404
BstAUI TGTACA 1 cut(s) 933
BstBAI YACGTR 1 cut(s) 384
BstC8I GCNNGC 4 cut(s) 208, 905, 1020, 1664
BstDEI CTNAG 5 cut(s) 61, 353, 1012, 1642, 1719
BstF5I GGATG 1 cut(s) 1551
BstFNI CGCG 1 cut(s) 287
BstH2I RGCGCY 1 cut(s) 1025
BstHHI GCGC 2 cut(s) 445, 1024
BstKTI GATC 6 cut(s) 156, 329, 777, 1077, 1320, 1687
BstMAI GTCTC 3 cut(s) 1267, 1602, 1641
BstMBI GATC 6 cut(s) 153, 326, 774, 1074, 1317, 1684
BstMWI GCNNNNNNNGC 3 cut(s) 146, 1112, 1430
BstNI CCWGG 3 cut(s) 440, 535, 1578
BstNSI RCATGY 1 cut(s) 1498
BstPAI GACNNNNGTC 1 cut(s) 1218
BstSCI CCNGG 3 cut(s) 438, 533, 1576
BstSFI CTRYAG 1 cut(s) 1623
BstSLI GKGCMC 1 cut(s) 895
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 4 cut(s) 1248, 1609, 1637, 1653
BstV2I GAAGAC 2 cut(s) 20, 399
BstXI CCANNNNNNTGG 1 cut(s) 130
BsuRI GGCC 1 cut(s) 1382
BtsCI GGATG 1 cut(s) 1551
BtsI GCAGTG 2 cut(s) 201, 825
BtsIMutI CAGTG 5 cut(s) 201, 513, 825, 980, 1115
BveI ACCTGC 1 cut(s) 1193
Cac8I GCNNGC 4 cut(s) 208, 905, 1020, 1664
CaiI CAGNNNCTG 1 cut(s) 515
CfoI GCGC 2 cut(s) 445, 1024
Cfr13I GGNCC 3 cut(s) 579, 765, 1380
CseI GACGC 3 cut(s) 54, 127, 393
Csp6I GTAC 4 cut(s) 35, 385, 934, 1194
CspCI CAANNNNNGTGG 2 cut(s) 1496, 1531
CviAII CATG 8 cut(s) 151, 247, 473, 762, 1097, 1240, 1288, 1495
CviQI GTAC 4 cut(s) 35, 385, 934, 1194
DdeI CTNAG 5 cut(s) 61, 353, 1012, 1642, 1719
DpnI GATC 6 cut(s) 155, 328, 776, 1076, 1319, 1686
DpnII GATC 6 cut(s) 153, 326, 774, 1074, 1317, 1684
DraI TTTAAA 3 cut(s) 93, 220, 295
Eam1104I CTCTTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 1602
Eco47I GGWCC 2 cut(s) 579, 765
Eco57I CTGAAG 1 cut(s) 1632
EcoO109I RGGNCCY 1 cut(s) 1380
EcoRI GAATTC 3 cut(s) 628, 1069, 1401
EcoRII CCWGG 3 cut(s) 438, 533, 1576
FaeI CATG 8 cut(s) 154, 250, 476, 765, 1100, 1243, 1291, 1498
FaqI GGGAC 2 cut(s) 371, 1594
FatI CATG 8 cut(s) 150, 246, 472, 761, 1096, 1239, 1287, 1494
FauI CCCGC 1 cut(s) 1011
FauNDI CATATG 1 cut(s) 930
FbaI TGATCA 3 cut(s) 153, 774, 1684
FblI GTMKAC 2 cut(s) 279, 966
Fnu4HI GCNGC 6 cut(s) 147, 1092, 1237, 1623, 1626, 1667
FokI GGATG 1 cut(s) 1558
Fsp4HI GCNGC 6 cut(s) 147, 1092, 1237, 1623, 1626, 1667
FspBI CTAG 2 cut(s) 395, 420
GlaI GCGC 2 cut(s) 444, 1023
GluI GCNGC 6 cut(s) 147, 1092, 1237, 1623, 1626, 1667
GsaI CCCAGC 1 cut(s) 1314
GsuI CTGGAG 2 cut(s) 152, 422
HaeII RGCGCY 1 cut(s) 1025
HaeIII GGCC 1 cut(s) 1382
HgaI GACGC 3 cut(s) 54, 127, 393
HhaI GCGC 2 cut(s) 445, 1024
Hin1I GRCGYC 2 cut(s) 119, 404
Hin1II CATG 8 cut(s) 154, 250, 476, 765, 1100, 1243, 1291, 1498
Hin6I GCGC 2 cut(s) 443, 1022
HinP1I GCGC 2 cut(s) 443, 1022
HincII GTYRAC 2 cut(s) 873, 1213
HindII GTYRAC 2 cut(s) 873, 1213
HindIII AAGCTT 1 cut(s) 125
HphI GGTGA 3 cut(s) 35, 308, 1162
Hpy166II GTNNAC 6 cut(s) 280, 873, 936, 967, 1194, 1213
Hpy188I TCNGA 7 cut(s) 486, 652, 738, 1224, 1596, 1651, 1689
Hpy8I GTNNAC 6 cut(s) 280, 873, 936, 967, 1194, 1213
Hpy99I CGWCG 3 cut(s) 121, 606, 673
HpyAV CCTTC 5 cut(s) 48, 742, 1076, 1211, 1536
HpyCH4III ACNGT 4 cut(s) 179, 677, 877, 950
HpyCH4IV ACGT 4 cut(s) 223, 383, 668, 938
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 1112, 1430
HpyF3I CTNAG 5 cut(s) 61, 353, 1012, 1642, 1719
HpySE526I ACGT 4 cut(s) 223, 383, 668, 938
Hsp92I GRCGYC 2 cut(s) 119, 404
Hsp92II CATG 8 cut(s) 154, 250, 476, 765, 1100, 1243, 1291, 1498
HspAI GCGC 2 cut(s) 443, 1022
KpnI GGTACC 1 cut(s) 38
Ksp22I TGATCA 3 cut(s) 153, 774, 1684
Kzo9I GATC 6 cut(s) 153, 326, 774, 1074, 1317, 1684
LmnI GCTCC 2 cut(s) 85, 1456
Lsp1109I GCAGC 4 cut(s) 1248, 1609, 1637, 1653
LweI GCATC 3 cut(s) 246, 729, 855
MaeI CTAG 2 cut(s) 395, 420
MaeII ACGT 4 cut(s) 223, 383, 668, 938
MaeIII GTNAC 6 cut(s) 66, 304, 782, 862, 939, 1165
MalI GATC 6 cut(s) 155, 328, 776, 1076, 1319, 1686
MbiI CCGCTC 1 cut(s) 1018
MboI GATC 6 cut(s) 153, 326, 774, 1074, 1317, 1684
MboII GAAGA 6 cut(s) 20, 41, 381, 399, 667, 1027
MfeI CAATTG 1 cut(s) 813
MhlI GDGCHC 1 cut(s) 895
MluI ACGCGT 1 cut(s) 285
MlyI GAGTC 6 cut(s) 143, 353, 484, 614, 731, 1154
MmeI TCCRAC 3 cut(s) 630, 1046, 1202
MroXI GAANNNNTTC 2 cut(s) 8, 194
MseI TTAA 9 cut(s) 92, 185, 219, 294, 477, 684, 732, 1437, 1732
MslI CAYNNNNRTG 1 cut(s) 1172
MspA1I CMGCKG 1 cut(s) 1628
MspR9I CCNGG 3 cut(s) 440, 535, 1578
MunI CAATTG 1 cut(s) 813
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 3 cut(s) 440, 535, 1578
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 3 cut(s) 146, 1112, 1430
NdeI CATATG 1 cut(s) 930
NdeII GATC 6 cut(s) 153, 326, 774, 1074, 1317, 1684
NlaIII CATG 8 cut(s) 154, 250, 476, 765, 1100, 1243, 1291, 1498
NlaIV GGNNCC 5 cut(s) 36, 81, 264, 1381, 1458
NmeAIII GCCGAG 1 cut(s) 879
NmuCI GTSAC 2 cut(s) 66, 1165
NspI RCATGY 1 cut(s) 1498
OliI CACNNNNGTG 1 cut(s) 1172
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 2 cut(s) 8, 194
PfeI GAWTC 6 cut(s) 322, 431, 522, 1054, 1411, 1591
PkrI GCNGC 6 cut(s) 148, 1093, 1238, 1624, 1627, 1668
PleI GAGTC 6 cut(s) 142, 353, 484, 614, 730, 1153
PpsI GAGTC 6 cut(s) 142, 353, 484, 614, 730, 1153
Ppu21I YACGTR 1 cut(s) 384
PshAI GACNNNNGTC 1 cut(s) 1218
PshBI ATTAAT 1 cut(s) 684
Psp6I CCWGG 3 cut(s) 438, 533, 1576
PspFI CCCAGC 1 cut(s) 1310
PspGI CCWGG 3 cut(s) 438, 533, 1576
PspN4I GGNNCC 5 cut(s) 36, 81, 264, 1381, 1458
PspPI GGNCC 3 cut(s) 579, 765, 1380
PstI CTGCAG 1 cut(s) 1627
PstNI CAGNNNCTG 1 cut(s) 515
PvuII CAGCTG 1 cut(s) 1628
RsaI GTAC 4 cut(s) 36, 386, 935, 1195
RsaNI GTAC 4 cut(s) 35, 385, 934, 1194
RseI CAYNNNNRTG 1 cut(s) 1172
SaqAI TTAA 9 cut(s) 92, 185, 219, 294, 477, 684, 732, 1437, 1732
SatI GCNGC 6 cut(s) 147, 1092, 1237, 1623, 1626, 1667
Sau3AI GATC 6 cut(s) 153, 326, 774, 1074, 1317, 1684
Sau96I GGNCC 3 cut(s) 579, 765, 1380
SchI GAGTC 6 cut(s) 143, 353, 484, 614, 731, 1154
ScrFI CCNGG 3 cut(s) 440, 535, 1578
SduI GDGCHC 1 cut(s) 895
SfaNI GCATC 3 cut(s) 246, 729, 855
SfcI CTRYAG 1 cut(s) 1623
SinI GGWCC 2 cut(s) 579, 765
SmiMI CAYNNNNRTG 1 cut(s) 1172
SpeI ACTAGT 1 cut(s) 394
SsiI CCGC 4 cut(s) 147, 1018, 1091, 1367
SspMI CTAG 2 cut(s) 395, 420
StyD4I CCNGG 3 cut(s) 438, 533, 1576
TaaI ACNGT 4 cut(s) 179, 677, 877, 950
TaiI ACGT 4 cut(s) 226, 386, 671, 941
TaqI TCGA 6 cut(s) 52, 116, 325, 671, 1073, 1589
TatI WGTACW 2 cut(s) 933, 1193
TauI GCSGC 2 cut(s) 149, 1094
TfiI GAWTC 6 cut(s) 322, 431, 522, 1054, 1411, 1591
Tru1I TTAA 9 cut(s) 92, 185, 219, 294, 477, 684, 732, 1437, 1732
Tru9I TTAA 9 cut(s) 92, 185, 219, 294, 477, 684, 732, 1437, 1732
TscAI CASTG 5 cut(s) 208, 520, 825, 987, 1122
TseFI GTSAC 2 cut(s) 66, 1165
TseI GCWGC 4 cut(s) 1236, 1622, 1625, 1666
Tsp45I GTSAC 2 cut(s) 66, 1165
TspDTI ATGAA 7 cut(s) 17, 187, 203, 564, 917, 1283, 1478
TspGWI ACGGA 1 cut(s) 1296
TspRI CASTG 5 cut(s) 208, 520, 825, 987, 1122
VpaK11BI GGWCC 2 cut(s) 579, 765
VspI ATTAAT 1 cut(s) 684
XapI RAATTY 7 cut(s) 88, 455, 480, 628, 1069, 1352, 1401
XceI RCATGY 1 cut(s) 1498
XcmI CCANNNNNNNNNTGG 1 cut(s) 1138
XmiI GTMKAC 2 cut(s) 279, 966
XmnI GAANNNNTTC 2 cut(s) 8, 194
XspI CTAG 2 cut(s) 395, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.