Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007075

Physical Location & Seq

Genomic Coordinates Reverse (-)

50840659 .. 50840946

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG322300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGTATTGGAGCCAGAAAATAGTGGGCATTACAACCTTATAGTTAACATGTATGCCGAAGTCAATCGATGGGGAGAAGTTGCAGACGTACGAGCAATTATGAAGCAACTGGGAGTAGAAAAAACATCTCCTGGGTCCAGTTGGATTGAAATTGAAAGAAAAATCCATACGTTTTCAGCATCTGACAAATCTCATGCAGCTTCTGGTGAAATTTACTTGTTTCTTGCAGAATTATATGAGCAGCTGAAGCTTGATGTTTATCTTCCTGAACTTGGCTCTGACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0019538 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 bHLH-MYC_N

Protein Analysis

95

Amino Acids

10.74

Weight (kDa)

4.78

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	3 - 50	1.1e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06143
fragaria_vesca	FvH4_2g21860
malus_domestica	MD05G1200200.v1.1 MD10G1186800.v1.1
prunus_persica	Prupe.8G226200_v2.0.a1
pyrus_communis	pycom05g18700
rosa_chinensis	RchiOBHm_Chr6g0288721 RchiOBHm_Chr6g0288731
rosa_laevigata	RLG00000012369 RLG00000012373 RLG00000012374 RLG00000012381
rosa_multiflora	Rmu_sc0004861.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179910
rosa_rugosa	Rorug06G0197800 Rorug06G0197900 Rorug06G0198000
rosa_samantha	Rh6BG314900 Rh6BG315000 Rh6CG322200 Rh6CG322300 Rh6DG308000 Rh6DG308100
rosa_wichuraiana	Rw6G026720 Rw6G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	210
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	149, 155
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	3 cut(s)	200, 244, 250
AluI	AGCT	3 cut(s)	200, 244, 250
AlwNI	CAGNNNCTG	2 cut(s)	182, 203
ApeKI	GCWGC	2 cut(s)	197, 241
ApoI	RAATTY	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	209, 253
BccI	CCATC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	132
BisI	GCNGC	2 cut(s)	198, 242
BlsI	GCNGC	2 cut(s)	199, 243
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	12, 136
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	188
BmuI	ACTGGG	1 cut(s)	119
Bsa29I	ATCGAT	1 cut(s)	67
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	114, 138
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	132
BseCI	ATCGAT	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	131
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseNI	ACTGG	2 cut(s)	114, 138
BseXI	GCAGC	2 cut(s)	209, 253
BshVI	ATCGAT	1 cut(s)	67
BsiWI	CGTACG	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	272
BspDI	ATCGAT	1 cut(s)	67
BspLI	GGNNCC	2 cut(s)	12, 136
BsrI	ACTGG	2 cut(s)	114, 138
BssECI	CCNNGG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	209, 253
Bsu15I	ATCGAT	1 cut(s)	67
BsuTUI	ATCGAT	1 cut(s)	67
CaiI	CAGNNNCTG	2 cut(s)	182, 203
Cfr13I	GGNCC	1 cut(s)	135
ClaI	ATCGAT	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	2 cut(s)	49, 194
CviJI	RGCY	5 cut(s)	13, 200, 244, 250, 276
CviKI_1	RGCY	5 cut(s)	13, 200, 244, 250, 276
CviQI	GTAC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	130
FaeI	CATG	2 cut(s)	52, 197
FaiI	YATR	8 cut(s)	41, 50, 54, 101, 168, 195, 235, 237
FatI	CATG	2 cut(s)	48, 193
Fnu4HI	GCNGC	2 cut(s)	198, 242
Fsp4HI	GCNGC	2 cut(s)	198, 242
GluI	GCNGC	2 cut(s)	198, 242
Hin1II	CATG	2 cut(s)	52, 197
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	248
HpaI	GTTAAC	1 cut(s)	46
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	184, 280
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	46
HpyCH4IV	ACGT	2 cut(s)	87, 170
HpyCH4V	TGCA	3 cut(s)	83, 197, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpySE526I	ACGT	2 cut(s)	87, 170
Hsp92II	CATG	2 cut(s)	52, 197
KspAI	GTTAAC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	7 cut(s)	27, 95, 117, 144, 151, 189, 279
Lsp1109I	GCAGC	2 cut(s)	209, 253
LweI	GCATC	1 cut(s)	188
MaeII	ACGT	2 cut(s)	87, 170
MboII	GAAGA	1 cut(s)	254
MluCI	AATT	4 cut(s)	96, 150, 210, 230
MmeI	TCCRAC	1 cut(s)	122
MseI	TTAA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	247
NlaIII	CATG	2 cut(s)	52, 197
NlaIV	GGNNCC	2 cut(s)	12, 136
NspI	RCATGY	1 cut(s)	52
PciI	ACATGT	1 cut(s)	48
Pfl23II	CGTACG	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	199, 243
PscI	ACATGT	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspLI	CGTACG	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	12, 136
PspPI	GGNCC	1 cut(s)	135
PstNI	CAGNNNCTG	2 cut(s)	182, 203
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	2 cut(s)	198, 242
Sau96I	GGNCC	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	6 cut(s)	39, 90, 173, 202, 246, 252
SfaNI	GCATC	1 cut(s)	188
SinI	GGWCC	1 cut(s)	135
Sse9I	AATT	4 cut(s)	96, 150, 210, 230
StyD4I	CCNGG	1 cut(s)	130
TaiI	ACGT	2 cut(s)	90, 173
TaqI	TCGA	1 cut(s)	67
TasI	AATT	4 cut(s)	96, 150, 210, 230
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseI	GCWGC	2 cut(s)	197, 241
TspDTI	ATGAA	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	1 cut(s)	210
XceI	RCATGY	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.