Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007075

Physical Location & Seq

Genomic Coordinates Reverse (-)

54487279 .. 54488547

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG314900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCCTTGGGGTAAGGGCCACAGCTCATATTCATTTAGTAATTCTACACCTTCATTCTTGGACCTCACTTTACTAGACTACATGCTAATCCATGCTTCGGGGATTGGATTGCATGGCTCCAATATAGGACATCTGGTTTTGACAATTCAAAACCACCAGATTTTCCACAGGACAGTCACTAGCATGGCCTCAGTGCAGTCTGAAGTTAGGCAGTGCAGAGCTACCATGTTGAACATTAACTCTGTAATACCTGGTCCATATGGCTTGACACGTTTGTCACTATCCACGGGAACGAAGAAAGACACAACTGATATCTGTGGCTTGACAAGTGAGGATGTATTGAAGACAAAACATGTAAGAACAGAGCTCAGTACCTGCATAAGTCACCAAGATTTGCTACAAAAGCTCCATTCACTGGTGGCACATCAACCCATTGATCTTTATGGAAGACTTGGAGGCCCCCAATCTCGTCTTGCAGAACTAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.82

Weight (kDa)

8.89

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06143
fragaria_vesca	FvH4_2g21860
malus_domestica	MD05G1200200.v1.1 MD10G1186800.v1.1
prunus_persica	Prupe.8G226200_v2.0.a1
pyrus_communis	pycom05g18700
rosa_chinensis	RchiOBHm_Chr6g0288721 RchiOBHm_Chr6g0288731
rosa_laevigata	RLG00000012369 RLG00000012373 RLG00000012374 RLG00000012381
rosa_multiflora	Rmu_sc0004861.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179910
rosa_rugosa	Rorug06G0197800 Rorug06G0197900 Rorug06G0198000
rosa_samantha	Rh6BG314900 Rh6BG315000 Rh6CG322200 Rh6CG322300 Rh6DG308000 Rh6DG308100
rosa_wichuraiana	Rw6G026720 Rw6G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	274
Acc36I	ACCTGC	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	415
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	2 cut(s)	97, 415
AflIII	ACRYGT	2 cut(s)	269, 352
AgsI	TTSAA	3 cut(s)	149, 232, 343
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	4 cut(s)	24, 221, 367, 406
AluI	AGCT	4 cut(s)	24, 221, 367, 406
Alw21I	GWGCWC	1 cut(s)	369
AlwNI	CAGNNNCTG	1 cut(s)	375
AoxI	GGCC	3 cut(s)	16, 186, 457
AspS9I	GGNCC	4 cut(s)	16, 61, 254, 458
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	2 cut(s)	61, 254
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	2 cut(s)	350, 454
Bbv12I	GWGCWC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	252
BfaI	CTAG	2 cut(s)	74, 180
BfuAI	ACCTGC	1 cut(s)	383
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	2 cut(s)	61, 254
BmgT120I	GGNCC	4 cut(s)	16, 61, 254, 458
BmiI	GGNNCC	2 cut(s)	118, 460
BmrFI	CCNGG	1 cut(s)	252
BpiI	GAAGAC	2 cut(s)	350, 454
BsaJI	CCNNGG	2 cut(s)	5, 285
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 415
Bse1I	ACTGG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	5, 285
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	2 cut(s)	97, 415
BseMII	CTCAG	2 cut(s)	204, 382
BseNI	ACTGG	1 cut(s)	420
BsgI	GTGCAG	2 cut(s)	215, 235
BshFI	GGCC	3 cut(s)	18, 188, 459
BsiHKAI	GWGCWC	1 cut(s)	369
BslI	CCNNNNNNNGG	2 cut(s)	97, 415
BsnI	GGCC	3 cut(s)	18, 188, 459
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	436
BspANI	GGCC	3 cut(s)	18, 188, 459
BspCNI	CTCAG	2 cut(s)	203, 381
BspLI	GGNNCC	2 cut(s)	118, 460
BspMI	ACCTGC	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	2 cut(s)	5, 285
BssMI	GATC	1 cut(s)	436
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	175
BstDEI	CTNAG	3 cut(s)	190, 368, 482
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	1 cut(s)	439
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	1 cut(s)	403
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	2 cut(s)	85, 356
BstSCI	CCNGG	1 cut(s)	250
BstV2I	GAAGAC	2 cut(s)	350, 454
BsuRI	GGCC	3 cut(s)	18, 188, 459
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	3 cut(s)	198, 218, 413
BveI	ACCTGC	1 cut(s)	383
CaiI	CAGNNNCTG	1 cut(s)	375
Cfr13I	GGNCC	4 cut(s)	16, 61, 254, 458
CsiI	ACCWGGT	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	6 cut(s)	82, 92, 113, 184, 226, 353
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	3 cut(s)	190, 368, 482
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
DrdI	GACNNNNNNGTC	1 cut(s)	274
DseDI	GACNNNNNNGTC	1 cut(s)	274
Ecl136II	GAGCTC	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	2 cut(s)	61, 254
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	6 cut(s)	85, 95, 116, 187, 229, 356
FatI	CATG	6 cut(s)	81, 91, 112, 183, 225, 352
FauNDI	CATATG	1 cut(s)	259
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	369
FspBI	CTAG	2 cut(s)	74, 180
HaeIII	GGCC	3 cut(s)	18, 188, 459
Hin1II	CATG	6 cut(s)	85, 95, 116, 187, 229, 356
HphI	GGTGA	1 cut(s)	377
Hpy188I	TCNGA	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	5 cut(s)	112, 196, 216, 378, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	403
HpyF3I	CTNAG	3 cut(s)	190, 368, 482
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	6 cut(s)	85, 95, 116, 187, 229, 356
Kzo9I	GATC	1 cut(s)	436
LmnI	GCTCC	2 cut(s)	122, 411
LpnPI	CCDG	7 cut(s)	119, 154, 170, 237, 264, 388, 401
MabI	ACCWGGT	1 cut(s)	250
MaeI	CTAG	2 cut(s)	74, 180
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	3 cut(s)	175, 276, 383
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	3 cut(s)	307, 355, 459
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	2 cut(s)	40, 144
MnlI	CCTC	4 cut(s)	74, 199, 325, 449
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	403
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	6 cut(s)	85, 95, 116, 187, 229, 356
NlaIV	GGNNCC	2 cut(s)	118, 460
NmuCI	GTSAC	3 cut(s)	175, 276, 383
NspI	RCATGY	2 cut(s)	85, 356
PciI	ACATGT	1 cut(s)	352
PflMI	CCANNNNNTGG	1 cut(s)	415
PscI	ACATGT	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	118, 460
PspPI	GGNCC	4 cut(s)	16, 61, 254, 458
PstNI	CAGNNNCTG	1 cut(s)	375
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	436
Sau96I	GGNCC	4 cut(s)	16, 61, 254, 458
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	369
SexAI	ACCWGGT	1 cut(s)	250
SinI	GGWCC	2 cut(s)	61, 254
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	40, 144
SspMI	CTAG	2 cut(s)	74, 180
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	274
TasI	AATT	2 cut(s)	40, 144
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	3 cut(s)	198, 218, 420
TseFI	GTSAC	3 cut(s)	175, 276, 383
Tsp45I	GTSAC	3 cut(s)	175, 276, 383
TspDTI	ATGAA	2 cut(s)	21, 42
TspRI	CASTG	3 cut(s)	198, 218, 420
Van91I	CCANNNNNTGG	1 cut(s)	415
VpaK11BI	GGWCC	2 cut(s)	61, 254
XceI	RCATGY	2 cut(s)	85, 356
XspI	CTAG	2 cut(s)	74, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.