Pentatricopeptide repeat-containing protein At1g06145-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06143 |
| fragaria_vesca | FvH4_2g21860 |
| malus_domestica | MD05G1200200.v1.1 MD10G1186800.v1.1 |
| prunus_persica | Prupe.8G226200_v2.0.a1 |
| pyrus_communis | pycom05g18700 |
| rosa_chinensis | RchiOBHm_Chr6g0288721 RchiOBHm_Chr6g0288731 |
| rosa_laevigata | RLG00000012369 RLG00000012373 RLG00000012374 RLG00000012381 |
| rosa_multiflora | Rmu_sc0004861.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00179910 |
| rosa_rugosa | Rorug06G0197800 Rorug06G0197900 Rorug06G0198000 |
| rosa_samantha | Rh6BG314900 Rh6BG315000 Rh6CG322200 Rh6CG322300 Rh6DG308000 Rh6DG308100 |
| rosa_wichuraiana | Rw6G026720 Rw6G026730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1397 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1533 |
| AccI | GTMKAC | 1 cut(s) | 291 |
| AccII | CGCG | 1 cut(s) | 644 |
| AciI | CCGC | 6 cut(s) | 13, 216, 235, 324, 642, 737 |
| AclWI | GGATC | 2 cut(s) | 872, 1320 |
| AcsI | RAATTY | 4 cut(s) | 818, 1087, 1370, 1674 |
| AcuI | CTGAAG | 2 cut(s) | 1542, 1730 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 88, 337, 931, 1533, 1736 |
| AflIII | ACRYGT | 3 cut(s) | 490, 1008, 1512 |
| AjnI | CCWGG | 1 cut(s) | 1594 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 438, 470, 1095, 1127 |
| AluBI | AGCT | 8 cut(s) | 142, 452, 905, 1328, 1420, 1664, 1708, 1714 |
| AluI | AGCT | 8 cut(s) | 142, 452, 905, 1328, 1420, 1664, 1708, 1714 |
| Alw26I | GTCTC | 2 cut(s) | 576, 1044 |
| AlwI | GGATC | 2 cut(s) | 872, 1320 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1646 |
| AoxI | GGCC | 4 cut(s) | 71, 414, 460, 1237 |
| ApeKI | GCWGC | 2 cut(s) | 1640, 1705 |
| ApoI | RAATTY | 4 cut(s) | 818, 1087, 1370, 1674 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 453, 1076 |
| AspLEI | GCGC | 1 cut(s) | 1028 |
| AspS9I | GGNCC | 4 cut(s) | 72, 91, 460, 1599 |
| AsuHPI | GGTGA | 1 cut(s) | 320 |
| AsuII | TTCGAA | 1 cut(s) | 527 |
| AvaII | GGWCC | 2 cut(s) | 91, 1599 |
| AxyI | CCTNAGG | 1 cut(s) | 87 |
| BaeGI | GKGCMC | 1 cut(s) | 913 |
| BanI | GGYRCC | 1 cut(s) | 1397 |
| BanII | GRGCYC | 1 cut(s) | 925 |
| BauI | CACGAG | 1 cut(s) | 1554 |
| BbvI | GCAGC | 2 cut(s) | 1652, 1717 |
| BccI | CCATC | 6 cut(s) | 103, 658, 921, 1147, 1527, 1638 |
| BceAI | ACGGC | 3 cut(s) | 86, 721, 1224 |
| BciT130I | CCWGG | 1 cut(s) | 1596 |
| BclI | TGATCA | 2 cut(s) | 165, 303 |
| BcoDI | GTCTC | 2 cut(s) | 576, 1044 |
| BfaI | CTAG | 5 cut(s) | 143, 714, 765, 1136, 1349 |
| BisI | GCNGC | 2 cut(s) | 1641, 1706 |
| BlsI | GCNGC | 2 cut(s) | 1642, 1707 |
| Bme1390I | CCNGG | 1 cut(s) | 1596 |
| Bme18I | GGWCC | 2 cut(s) | 91, 1599 |
| BmgT120I | GGNCC | 4 cut(s) | 72, 91, 460, 1599 |
| BmiI | GGNNCC | 5 cut(s) | 93, 922, 1399, 1476, 1600 |
| BmrFI | CCNGG | 1 cut(s) | 1596 |
| BmsI | GCATC | 4 cut(s) | 1292, 1333, 1652, 1708 |
| Bpu10I | CCTNAGC | 1 cut(s) | 365 |
| Bpu14I | TTCGAA | 1 cut(s) | 527 |
| BsaI | GGTCTC | 1 cut(s) | 1044 |
| BsaJI | CCNNGG | 1 cut(s) | 1595 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 438, 468, 731, 761 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 88, 337, 931, 1533, 1736 |
| Bse118I | RCCGGY | 1 cut(s) | 1701 |
| Bse1I | ACTGG | 2 cut(s) | 387, 1602 |
| Bse21I | CCTNAGG | 1 cut(s) | 87 |
| Bse3DI | GCAATG | 2 cut(s) | 730, 1146 |
| BseBI | CCWGG | 1 cut(s) | 1596 |
| BseDI | CCNNGG | 1 cut(s) | 1595 |
| BseGI | GGATG | 7 cut(s) | 21, 98, 861, 1307, 1418, 1595, 1657 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 88, 337, 931, 1533, 1736 |
| BseMI | GCAATG | 2 cut(s) | 730, 1146 |
| BseMII | CTCAG | 3 cut(s) | 101, 379, 821 |
| BseNI | ACTGG | 2 cut(s) | 387, 1602 |
| BseSI | GKGCMC | 1 cut(s) | 913 |
| BseXI | GCAGC | 2 cut(s) | 1652, 1717 |
| BsgI | GTGCAG | 2 cut(s) | 403, 1195 |
| Bsh1236I | CGCG | 1 cut(s) | 644 |
| BshFI | GGCC | 4 cut(s) | 73, 416, 462, 1239 |
| BshNI | GGYRCC | 1 cut(s) | 1397 |
| BsiSI | CCGG | 1 cut(s) | 1702 |
| BslFI | GGGAC | 1 cut(s) | 261 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 88, 337, 931, 1533, 1736 |
| BsmAI | GTCTC | 2 cut(s) | 576, 1044 |
| BsmBI | CGTCTC | 1 cut(s) | 576 |
| BsmFI | GGGAC | 1 cut(s) | 261 |
| BsnI | GGCC | 4 cut(s) | 73, 416, 462, 1239 |
| Bso31I | GGTCTC | 1 cut(s) | 1044 |
| Bsp119I | TTCGAA | 1 cut(s) | 527 |
| Bsp1286I | GDGCHC | 2 cut(s) | 913, 925 |
| Bsp143I | GATC | 7 cut(s) | 165, 303, 699, 864, 973, 1167, 1312 |
| BspACI | CCGC | 6 cut(s) | 13, 216, 235, 324, 642, 737 |
| BspANI | GGCC | 4 cut(s) | 73, 416, 462, 1239 |
| BspCNI | CTCAG | 3 cut(s) | 100, 378, 820 |
| BspFNI | CGCG | 1 cut(s) | 644 |
| BspHI | TCATGA | 1 cut(s) | 198 |
| BspLI | GGNNCC | 5 cut(s) | 93, 922, 1399, 1476, 1600 |
| BspPI | GGATC | 2 cut(s) | 872, 1320 |
| BspT104I | TTCGAA | 1 cut(s) | 527 |
| BspT107I | GGYRCC | 1 cut(s) | 1397 |
| BspTNI | GGTCTC | 1 cut(s) | 1044 |
| BsrDI | GCAATG | 2 cut(s) | 730, 1146 |
| BsrFI | RCCGGY | 1 cut(s) | 1701 |
| BsrI | ACTGG | 2 cut(s) | 387, 1602 |
| BssAI | RCCGGY | 1 cut(s) | 1701 |
| BssECI | CCNNGG | 1 cut(s) | 1595 |
| BssMI | GATC | 7 cut(s) | 165, 303, 699, 864, 973, 1167, 1312 |
| BssSI | CACGAG | 1 cut(s) | 1554 |
| Bst2BI | CACGAG | 1 cut(s) | 1554 |
| Bst2UI | CCWGG | 1 cut(s) | 1596 |
| Bst4CI | ACNGT | 3 cut(s) | 41, 895, 1468 |
| Bst6I | CTCTTC | 1 cut(s) | 66 |
| BstBI | TTCGAA | 1 cut(s) | 527 |
| BstC8I | GCNNGC | 2 cut(s) | 418, 1689 |
| BstDEI | CTNAG | 5 cut(s) | 87, 365, 807, 1017, 1202 |
| BstEII | GGTNACC | 1 cut(s) | 326 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 86 |
| BstF5I | GGATG | 7 cut(s) | 21, 98, 861, 1307, 1418, 1595, 1657 |
| BstFNI | CGCG | 1 cut(s) | 644 |
| BstHHI | GCGC | 1 cut(s) | 1028 |
| BstKTI | GATC | 7 cut(s) | 168, 306, 702, 867, 976, 1170, 1315 |
| BstMAI | GTCTC | 2 cut(s) | 576, 1044 |
| BstMBI | GATC | 7 cut(s) | 165, 303, 699, 864, 973, 1167, 1312 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 254, 1130, 1711 |
| BstNI | CCWGG | 1 cut(s) | 1596 |
| BstNSI | RCATGY | 4 cut(s) | 494, 760, 1012, 1516 |
| BstPI | GGTNACC | 1 cut(s) | 326 |
| BstSCI | CCNGG | 1 cut(s) | 1594 |
| BstSLI | GKGCMC | 1 cut(s) | 913 |
| BstUI | CGCG | 1 cut(s) | 644 |
| BstV1I | GCAGC | 2 cut(s) | 1652, 1717 |
| BstX2I | RGATCY | 1 cut(s) | 1312 |
| BstYI | RGATCY | 1 cut(s) | 1312 |
| Bsu36I | CCTNAGG | 1 cut(s) | 87 |
| BsuRI | GGCC | 4 cut(s) | 73, 416, 462, 1239 |
| BtgZI | GCGATG | 1 cut(s) | 314 |
| BtsCI | GGATG | 7 cut(s) | 21, 98, 861, 1307, 1418, 1595, 1657 |
| BtsIMutI | CAGTG | 1 cut(s) | 550 |
| Cac8I | GCNNGC | 2 cut(s) | 418, 1689 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1646 |
| CciI | TCATGA | 1 cut(s) | 198 |
| CfoI | GCGC | 1 cut(s) | 1028 |
| Cfr10I | RCCGGY | 1 cut(s) | 1701 |
| Cfr13I | GGNCC | 4 cut(s) | 72, 91, 460, 1599 |
| CseI | GACGC | 2 cut(s) | 235, 593 |
| DdeI | CTNAG | 5 cut(s) | 87, 365, 807, 1017, 1202 |
| DpnI | GATC | 7 cut(s) | 167, 305, 701, 866, 975, 1169, 1314 |
| DpnII | GATC | 7 cut(s) | 165, 303, 699, 864, 973, 1167, 1312 |
| DraI | TTTAAA | 1 cut(s) | 1057 |
| Eam1104I | CTCTTC | 1 cut(s) | 66 |
| EarI | CTCTTC | 1 cut(s) | 66 |
| Eco147I | AGGCCT | 1 cut(s) | 416 |
| Eco24I | GRGCYC | 1 cut(s) | 925 |
| Eco31I | GGTCTC | 1 cut(s) | 1044 |
| Eco47I | GGWCC | 2 cut(s) | 91, 1599 |
| Eco57I | CTGAAG | 2 cut(s) | 1542, 1730 |
| Eco81I | CCTNAGG | 1 cut(s) | 87 |
| Eco91I | GGTNACC | 1 cut(s) | 326 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 86 |
| EcoO109I | RGGNCCY | 1 cut(s) | 91 |
| EcoO65I | GGTNACC | 1 cut(s) | 326 |
| EcoRI | GAATTC | 1 cut(s) | 1087 |
| EcoRII | CCWGG | 1 cut(s) | 1594 |
| EcoT22I | ATGCAT | 1 cut(s) | 1307 |
| EcoT38I | GRGCYC | 1 cut(s) | 925 |
| Esp3I | CGTCTC | 1 cut(s) | 576 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 571, 603 |
| FaqI | GGGAC | 1 cut(s) | 261 |
| FauI | CCCGC | 1 cut(s) | 242 |
| FbaI | TGATCA | 2 cut(s) | 165, 303 |
| FblI | GTMKAC | 1 cut(s) | 291 |
| Fnu4HI | GCNGC | 2 cut(s) | 1641, 1706 |
| FokI | GGATG | 7 cut(s) | 28, 85, 868, 1314, 1425, 1602, 1644 |
| FriOI | GRGCYC | 1 cut(s) | 925 |
| Fsp4HI | GCNGC | 2 cut(s) | 1641, 1706 |
| FspBI | CTAG | 5 cut(s) | 143, 714, 765, 1136, 1349 |
| GlaI | GCGC | 1 cut(s) | 1027 |
| GluI | GCNGC | 2 cut(s) | 1641, 1706 |
| HaeIII | GGCC | 4 cut(s) | 73, 416, 462, 1239 |
| HapII | CCGG | 1 cut(s) | 1702 |
| HgaI | GACGC | 2 cut(s) | 235, 593 |
| HhaI | GCGC | 1 cut(s) | 1028 |
| Hin6I | GCGC | 1 cut(s) | 1026 |
| HinP1I | GCGC | 1 cut(s) | 1026 |
| HincII | GTYRAC | 1 cut(s) | 1510 |
| HindII | GTYRAC | 1 cut(s) | 1510 |
| HindIII | AAGCTT | 2 cut(s) | 1418, 1712 |
| HinfI | GANTC | 4 cut(s) | 188, 540, 548, 731 |
| HpaI | GTTAAC | 1 cut(s) | 1510 |
| HpaII | CCGG | 1 cut(s) | 1702 |
| HphI | GGTGA | 1 cut(s) | 320 |
| Hpy166II | GTNNAC | 4 cut(s) | 292, 597, 1114, 1510 |
| Hpy188I | TCNGA | 3 cut(s) | 504, 810, 1648 |
| Hpy188III | TCNNGA | 8 cut(s) | 89, 169, 199, 552, 872, 977, 1283, 1730 |
| Hpy8I | GTNNAC | 4 cut(s) | 292, 597, 1114, 1510 |
| Hpy99I | CGWCG | 3 cut(s) | 229, 540, 707 |
| HpyAV | CCTTC | 3 cut(s) | 1094, 1229, 1561 |
| HpyCH4III | ACNGT | 3 cut(s) | 41, 895, 1468 |
| HpyCH4IV | ACGT | 1 cut(s) | 618 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 254, 1130, 1711 |
| HpyF3I | CTNAG | 5 cut(s) | 87, 365, 807, 1017, 1202 |
| HpySE526I | ACGT | 1 cut(s) | 618 |
| HspAI | GCGC | 1 cut(s) | 1026 |
| Ksp22I | TGATCA | 2 cut(s) | 165, 303 |
| KspAI | GTTAAC | 1 cut(s) | 1510 |
| Kzo9I | GATC | 7 cut(s) | 165, 303, 699, 864, 973, 1167, 1312 |
| LmnI | GCTCC | 2 cut(s) | 920, 1474 |
| Lsp1109I | GCAGC | 2 cut(s) | 1652, 1717 |
| LweI | GCATC | 4 cut(s) | 1292, 1333, 1652, 1708 |
| MaeI | CTAG | 5 cut(s) | 143, 714, 765, 1136, 1349 |
| MaeII | ACGT | 1 cut(s) | 618 |
| MaeIII | GTNAC | 5 cut(s) | 326, 486, 845, 880, 1183 |
| MalI | GATC | 7 cut(s) | 167, 305, 701, 866, 975, 1169, 1314 |
| MboI | GATC | 7 cut(s) | 165, 303, 699, 864, 973, 1167, 1312 |
| MboII | GAAGA | 8 cut(s) | 53, 56, 124, 187, 1177, 1244, 1271, 1352 |
| MfeI | CAATTG | 1 cut(s) | 1095 |
| MflI | RGATCY | 1 cut(s) | 1312 |
| MhlI | GDGCHC | 2 cut(s) | 913, 925 |
| MluCI | AATT | 8 cut(s) | 818, 1058, 1087, 1095, 1370, 1460, 1674, 1694 |
| MlyI | GAGTC | 2 cut(s) | 182, 740 |
| MmeI | TCCRAC | 3 cut(s) | 424, 1064, 1586 |
| MnlI | CCTC | 6 cut(s) | 69, 96, 169, 639, 661, 846 |
| Mph1103I | ATGCAT | 1 cut(s) | 1307 |
| MroXI | GAANNNNTTC | 2 cut(s) | 453, 1076 |
| MseI | TTAA | 6 cut(s) | 36, 134, 407, 750, 1056, 1509 |
| MslI | CAYNNNNRTG | 1 cut(s) | 854 |
| MspA1I | CMGCKG | 1 cut(s) | 1708 |
| MspI | CCGG | 1 cut(s) | 1702 |
| MspR9I | CCNGG | 1 cut(s) | 1596 |
| MunI | CAATTG | 1 cut(s) | 1095 |
| MvaI | CCWGG | 1 cut(s) | 1596 |
| MvnI | CGCG | 1 cut(s) | 644 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 254, 1130, 1711 |
| NdeII | GATC | 7 cut(s) | 165, 303, 699, 864, 973, 1167, 1312 |
| NlaIV | GGNNCC | 5 cut(s) | 93, 922, 1399, 1476, 1600 |
| NmuCI | GTSAC | 4 cut(s) | 326, 486, 845, 880 |
| NsiI | ATGCAT | 1 cut(s) | 1307 |
| NspI | RCATGY | 4 cut(s) | 494, 760, 1012, 1516 |
| NspV | TTCGAA | 1 cut(s) | 527 |
| PagI | TCATGA | 1 cut(s) | 198 |
| PceI | AGGCCT | 1 cut(s) | 416 |
| PciI | ACATGT | 3 cut(s) | 490, 1008, 1512 |
| PdmI | GAANNNNTTC | 2 cut(s) | 453, 1076 |
| PfeI | GAWTC | 2 cut(s) | 540, 548 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1533 |
| PkrI | GCNGC | 2 cut(s) | 1642, 1707 |
| PleI | GAGTC | 2 cut(s) | 182, 739 |
| PpsI | GAGTC | 2 cut(s) | 182, 739 |
| PpuMI | RGGWCCY | 1 cut(s) | 91 |
| PscI | ACATGT | 3 cut(s) | 490, 1008, 1512 |
| Psp5II | RGGWCCY | 1 cut(s) | 91 |
| Psp6I | CCWGG | 1 cut(s) | 1594 |
| PspEI | GGTNACC | 1 cut(s) | 326 |
| PspGI | CCWGG | 1 cut(s) | 1594 |
| PspN4I | GGNNCC | 5 cut(s) | 93, 922, 1399, 1476, 1600 |
| PspPI | GGNCC | 4 cut(s) | 72, 91, 460, 1599 |
| PspPPI | RGGWCCY | 1 cut(s) | 91 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1646 |
| PsuI | RGATCY | 1 cut(s) | 1312 |
| PvuII | CAGCTG | 1 cut(s) | 1708 |
| RseI | CAYNNNNRTG | 1 cut(s) | 854 |
| SaqAI | TTAA | 6 cut(s) | 36, 134, 407, 750, 1056, 1509 |
| SatI | GCNGC | 2 cut(s) | 1641, 1706 |
| Sau3AI | GATC | 7 cut(s) | 165, 303, 699, 864, 973, 1167, 1312 |
| Sau96I | GGNCC | 4 cut(s) | 72, 91, 460, 1599 |
| SchI | GAGTC | 2 cut(s) | 182, 740 |
| ScrFI | CCNGG | 1 cut(s) | 1596 |
| SduI | GDGCHC | 2 cut(s) | 913, 925 |
| SfaNI | GCATC | 4 cut(s) | 1292, 1333, 1652, 1708 |
| SfuI | TTCGAA | 1 cut(s) | 527 |
| SinI | GGWCC | 2 cut(s) | 91, 1599 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 854 |
| Sse9I | AATT | 8 cut(s) | 818, 1058, 1087, 1095, 1370, 1460, 1674, 1694 |
| SseBI | AGGCCT | 1 cut(s) | 416 |
| SsiI | CCGC | 6 cut(s) | 13, 216, 235, 324, 642, 737 |
| SspMI | CTAG | 5 cut(s) | 143, 714, 765, 1136, 1349 |
| StuI | AGGCCT | 1 cut(s) | 416 |
| StyD4I | CCNGG | 1 cut(s) | 1594 |
| TaaI | ACNGT | 3 cut(s) | 41, 895, 1468 |
| TaiI | ACGT | 1 cut(s) | 621 |
| TaqI | TCGA | 4 cut(s) | 224, 527, 622, 702 |
| TasI | AATT | 8 cut(s) | 818, 1058, 1087, 1095, 1370, 1460, 1674, 1694 |
| TfiI | GAWTC | 2 cut(s) | 540, 548 |
| Tru1I | TTAA | 6 cut(s) | 36, 134, 407, 750, 1056, 1509 |
| Tru9I | TTAA | 6 cut(s) | 36, 134, 407, 750, 1056, 1509 |
| TscAI | CASTG | 1 cut(s) | 550 |
| TseFI | GTSAC | 4 cut(s) | 326, 486, 845, 880 |
| TseI | GCWGC | 2 cut(s) | 1640, 1705 |
| Tsp45I | GTSAC | 4 cut(s) | 326, 486, 845, 880 |
| TspGWI | ACGGA | 1 cut(s) | 1131 |
| TspRI | CASTG | 1 cut(s) | 550 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1533 |
| VpaK11BI | GGWCC | 2 cut(s) | 91, 1599 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 86 |
| XapI | RAATTY | 4 cut(s) | 818, 1087, 1370, 1674 |
| XceI | RCATGY | 4 cut(s) | 494, 760, 1012, 1516 |
| XmiI | GTMKAC | 1 cut(s) | 291 |
| XmnI | GAANNNNTTC | 2 cut(s) | 453, 1076 |
| XspI | CTAG | 5 cut(s) | 143, 714, 765, 1136, 1349 |
| Zsp2I | ATGCAT | 1 cut(s) | 1307 |