Prupe.8G226200_v2.0.a1
BHLH Family

Pentatricopeptide repeat-containing protein At1g06145-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
20299155 .. 20300906
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G226200.1

Sequence Viewer

Length: 1752 bp
ATGATTTTCAAGCGGATGAAATGCACAGCCAACTTTAACTGTTTTTCAAAACAAAAACCTCTTCTTCAACGGCCCAAACCCCTGCCTCAGGACCCATCATCCATAGTTGAGAAGATAAAGAAATGTTCAACTTTAACAGAGCTAGAACGAGTATGTGCCTCAATGATCAAGACCAATGCTACCCAAGACTCTTTCTTCATGAACCAACTCATTACCGCCTGTTCGACGCTTTCCCGCATAGATTATGCAGTTTTAGCCTTTACCCAGATTGAAAGTCCCAATGTTTTTGTCTACAATGCGATGATCAAAGGCTTTGTTTGTTGCGGTCACCCATGTCAGGCTTTAGGTTGTTATATCAATATGCTCAGGGGCATGGTTTTGCCTACCAGTTATACTTTTTCATCGTTAATCAAGGCCTGCACTTCACTATCTGCGTTGGGGGTTGGAGAAGCTGTTCAGGGCCACATTTGGAAAAATGGGTTTGGGTCACATGTGTTTGTTCAGACTTCTTTGATTGATTTTTATTCGAAGTTGCGACGAATCAGTGAATCCAGAAAGGTGTTTGATGAAATGCCTGAAAGAGACGCTTTTGCGTGGACTACTATGGTTTCATCTCACGTTCGAGTGGGGGATATGAGTTCCGCGAGGATATTATTTGATGAGATGGAGGAAAGGAACATAACTACTTGGAATACTATGATCGACGGCTACGCTAGACTTGGCAATGTGGAGTCTGCGGAGTTGTTGTTTAATCACATGCCAACTAGGGATATTATCTCATGGACTACTATGATTGATTGTTATTCTCAGAATAAGAAATTTGGGGAAGCATTAGCAGTTTTTAGTGACATGAGGATGAAAGGGATCAGTCCTGATGAAGTGACTATGGCAACTGTTATTTCAGCTTGTGCCCATCTTGGAGCCCTTGACTTGGGAAAGGAGATACATCTTTACATATTGCAAAATGGGTTTGATCTTGATGTTTATATTGGCTCTGCATTGATTGACATGTATGCTAAGTGTGGCGCATTGGATAGGTCTCTTTTGGTTTTCTTTAAATTGCAGGACAAGAACCTGTTCTGTTGGAATTCAGCAATTGAAGGACTTGCAGTTCACGGATTTGCCAAAGAAGCACTAGCAATGTTTAGCAAGATGGAGAGAGAGAAGATCAATCCAAATGGGGTTACTTTTGTAAGTGTTCTAAGTTCCTGCACTCATGCAGGGCTTGTTGAAGAAGGCCGTAGGAGATTTTCAAGCATGACCCAAGATTATTCCATTCTTCCCGAAGTTGAACACTATGGATGCATGGTGGATCTATTGAGCAAAGCTGGATTGCTTGAAGATGCACTAGAGTTGATAAGAAGCATGAAATTTGAACCTAATGCTGTTATCTGGGGTGCCTTGTTGGGTGGATGTAAGCTTCATAGGAACTTGGAGATTGCTAAAGTTTCTGTCAATGAATTGACGGTATTGGAGCCAAATAATAGTGGCTATTACACCCTTTTGGTTAACATGTATGCTGAAGCCAAACGATGGCGACAAGTTGCAGATACACGAGCAACTATGAAGGAACTTGGGGTAGAAAAGGGATGTCCTGGGTCCAGTTGGATTGAAATGGAAAGGAAAGTCCATCAGTTTGCAGCATCTGATAAATCTCATCCAGCTTCAAGTGAAATTTACTTGTTGCTGGCAGAATTATACCGGCAGCTGAAGCTTGATGCTTGTGTTCCTGAACTTGGCTTTGAGTTATAG

Protein Analysis

584

Amino Acids

65.37

Weight (kDa)

6.52

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1397
AccB7I CCANNNNNTGG 1 cut(s) 1533
AccI GTMKAC 1 cut(s) 291
AccII CGCG 1 cut(s) 644
AciI CCGC 6 cut(s) 13, 216, 235, 324, 642, 737
AclWI GGATC 2 cut(s) 872, 1320
AcsI RAATTY 4 cut(s) 818, 1087, 1370, 1674
AcuI CTGAAG 2 cut(s) 1542, 1730
AfiI CCNNNNNNNGG 5 cut(s) 88, 337, 931, 1533, 1736
AflIII ACRYGT 3 cut(s) 490, 1008, 1512
AjnI CCWGG 1 cut(s) 1594
AloI GAACNNNNNNTCC 4 cut(s) 438, 470, 1095, 1127
AluBI AGCT 8 cut(s) 142, 452, 905, 1328, 1420, 1664, 1708, 1714
AluI AGCT 8 cut(s) 142, 452, 905, 1328, 1420, 1664, 1708, 1714
Alw26I GTCTC 2 cut(s) 576, 1044
AlwI GGATC 2 cut(s) 872, 1320
AlwNI CAGNNNCTG 1 cut(s) 1646
AoxI GGCC 4 cut(s) 71, 414, 460, 1237
ApeKI GCWGC 2 cut(s) 1640, 1705
ApoI RAATTY 4 cut(s) 818, 1087, 1370, 1674
Asp700I GAANNNNTTC 2 cut(s) 453, 1076
AspLEI GCGC 1 cut(s) 1028
AspS9I GGNCC 4 cut(s) 72, 91, 460, 1599
AsuHPI GGTGA 1 cut(s) 320
AsuII TTCGAA 1 cut(s) 527
AvaII GGWCC 2 cut(s) 91, 1599
AxyI CCTNAGG 1 cut(s) 87
BaeGI GKGCMC 1 cut(s) 913
BanI GGYRCC 1 cut(s) 1397
BanII GRGCYC 1 cut(s) 925
BauI CACGAG 1 cut(s) 1554
BbvI GCAGC 2 cut(s) 1652, 1717
BccI CCATC 6 cut(s) 103, 658, 921, 1147, 1527, 1638
BceAI ACGGC 3 cut(s) 86, 721, 1224
BciT130I CCWGG 1 cut(s) 1596
BclI TGATCA 2 cut(s) 165, 303
BcoDI GTCTC 2 cut(s) 576, 1044
BfaI CTAG 5 cut(s) 143, 714, 765, 1136, 1349
BisI GCNGC 2 cut(s) 1641, 1706
BlsI GCNGC 2 cut(s) 1642, 1707
Bme1390I CCNGG 1 cut(s) 1596
Bme18I GGWCC 2 cut(s) 91, 1599
BmgT120I GGNCC 4 cut(s) 72, 91, 460, 1599
BmiI GGNNCC 5 cut(s) 93, 922, 1399, 1476, 1600
BmrFI CCNGG 1 cut(s) 1596
BmsI GCATC 4 cut(s) 1292, 1333, 1652, 1708
Bpu10I CCTNAGC 1 cut(s) 365
Bpu14I TTCGAA 1 cut(s) 527
BsaI GGTCTC 1 cut(s) 1044
BsaJI CCNNGG 1 cut(s) 1595
BsaXI ACNNNNNCTCC 4 cut(s) 438, 468, 731, 761
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 337, 931, 1533, 1736
Bse118I RCCGGY 1 cut(s) 1701
Bse1I ACTGG 2 cut(s) 387, 1602
Bse21I CCTNAGG 1 cut(s) 87
Bse3DI GCAATG 2 cut(s) 730, 1146
BseBI CCWGG 1 cut(s) 1596
BseDI CCNNGG 1 cut(s) 1595
BseGI GGATG 7 cut(s) 21, 98, 861, 1307, 1418, 1595, 1657
BseLI CCNNNNNNNGG 5 cut(s) 88, 337, 931, 1533, 1736
BseMI GCAATG 2 cut(s) 730, 1146
BseMII CTCAG 3 cut(s) 101, 379, 821
BseNI ACTGG 2 cut(s) 387, 1602
BseSI GKGCMC 1 cut(s) 913
BseXI GCAGC 2 cut(s) 1652, 1717
BsgI GTGCAG 2 cut(s) 403, 1195
Bsh1236I CGCG 1 cut(s) 644
BshFI GGCC 4 cut(s) 73, 416, 462, 1239
BshNI GGYRCC 1 cut(s) 1397
BsiSI CCGG 1 cut(s) 1702
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 5 cut(s) 88, 337, 931, 1533, 1736
BsmAI GTCTC 2 cut(s) 576, 1044
BsmBI CGTCTC 1 cut(s) 576
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 4 cut(s) 73, 416, 462, 1239
Bso31I GGTCTC 1 cut(s) 1044
Bsp119I TTCGAA 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 913, 925
Bsp143I GATC 7 cut(s) 165, 303, 699, 864, 973, 1167, 1312
BspACI CCGC 6 cut(s) 13, 216, 235, 324, 642, 737
BspANI GGCC 4 cut(s) 73, 416, 462, 1239
BspCNI CTCAG 3 cut(s) 100, 378, 820
BspFNI CGCG 1 cut(s) 644
BspHI TCATGA 1 cut(s) 198
BspLI GGNNCC 5 cut(s) 93, 922, 1399, 1476, 1600
BspPI GGATC 2 cut(s) 872, 1320
BspT104I TTCGAA 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 1397
BspTNI GGTCTC 1 cut(s) 1044
BsrDI GCAATG 2 cut(s) 730, 1146
BsrFI RCCGGY 1 cut(s) 1701
BsrI ACTGG 2 cut(s) 387, 1602
BssAI RCCGGY 1 cut(s) 1701
BssECI CCNNGG 1 cut(s) 1595
BssMI GATC 7 cut(s) 165, 303, 699, 864, 973, 1167, 1312
BssSI CACGAG 1 cut(s) 1554
Bst2BI CACGAG 1 cut(s) 1554
Bst2UI CCWGG 1 cut(s) 1596
Bst4CI ACNGT 3 cut(s) 41, 895, 1468
Bst6I CTCTTC 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 527
BstC8I GCNNGC 2 cut(s) 418, 1689
BstDEI CTNAG 5 cut(s) 87, 365, 807, 1017, 1202
BstEII GGTNACC 1 cut(s) 326
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 7 cut(s) 21, 98, 861, 1307, 1418, 1595, 1657
BstFNI CGCG 1 cut(s) 644
BstHHI GCGC 1 cut(s) 1028
BstKTI GATC 7 cut(s) 168, 306, 702, 867, 976, 1170, 1315
BstMAI GTCTC 2 cut(s) 576, 1044
BstMBI GATC 7 cut(s) 165, 303, 699, 864, 973, 1167, 1312
BstMWI GCNNNNNNNGC 3 cut(s) 254, 1130, 1711
BstNI CCWGG 1 cut(s) 1596
BstNSI RCATGY 4 cut(s) 494, 760, 1012, 1516
BstPI GGTNACC 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 1594
BstSLI GKGCMC 1 cut(s) 913
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 2 cut(s) 1652, 1717
BstX2I RGATCY 1 cut(s) 1312
BstYI RGATCY 1 cut(s) 1312
Bsu36I CCTNAGG 1 cut(s) 87
BsuRI GGCC 4 cut(s) 73, 416, 462, 1239
BtgZI GCGATG 1 cut(s) 314
BtsCI GGATG 7 cut(s) 21, 98, 861, 1307, 1418, 1595, 1657
BtsIMutI CAGTG 1 cut(s) 550
Cac8I GCNNGC 2 cut(s) 418, 1689
CaiI CAGNNNCTG 1 cut(s) 1646
CciI TCATGA 1 cut(s) 198
CfoI GCGC 1 cut(s) 1028
Cfr10I RCCGGY 1 cut(s) 1701
Cfr13I GGNCC 4 cut(s) 72, 91, 460, 1599
CseI GACGC 2 cut(s) 235, 593
DdeI CTNAG 5 cut(s) 87, 365, 807, 1017, 1202
DpnI GATC 7 cut(s) 167, 305, 701, 866, 975, 1169, 1314
DpnII GATC 7 cut(s) 165, 303, 699, 864, 973, 1167, 1312
DraI TTTAAA 1 cut(s) 1057
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco147I AGGCCT 1 cut(s) 416
Eco24I GRGCYC 1 cut(s) 925
Eco31I GGTCTC 1 cut(s) 1044
Eco47I GGWCC 2 cut(s) 91, 1599
Eco57I CTGAAG 2 cut(s) 1542, 1730
Eco81I CCTNAGG 1 cut(s) 87
Eco91I GGTNACC 1 cut(s) 326
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 91
EcoO65I GGTNACC 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 1087
EcoRII CCWGG 1 cut(s) 1594
EcoT22I ATGCAT 1 cut(s) 1307
EcoT38I GRGCYC 1 cut(s) 925
Esp3I CGTCTC 1 cut(s) 576
FalI AAGNNNNNCTT 2 cut(s) 571, 603
FaqI GGGAC 1 cut(s) 261
FauI CCCGC 1 cut(s) 242
FbaI TGATCA 2 cut(s) 165, 303
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 1641, 1706
FokI GGATG 7 cut(s) 28, 85, 868, 1314, 1425, 1602, 1644
FriOI GRGCYC 1 cut(s) 925
Fsp4HI GCNGC 2 cut(s) 1641, 1706
FspBI CTAG 5 cut(s) 143, 714, 765, 1136, 1349
GlaI GCGC 1 cut(s) 1027
GluI GCNGC 2 cut(s) 1641, 1706
HaeIII GGCC 4 cut(s) 73, 416, 462, 1239
HapII CCGG 1 cut(s) 1702
HgaI GACGC 2 cut(s) 235, 593
HhaI GCGC 1 cut(s) 1028
Hin6I GCGC 1 cut(s) 1026
HinP1I GCGC 1 cut(s) 1026
HincII GTYRAC 1 cut(s) 1510
HindII GTYRAC 1 cut(s) 1510
HindIII AAGCTT 2 cut(s) 1418, 1712
HinfI GANTC 4 cut(s) 188, 540, 548, 731
HpaI GTTAAC 1 cut(s) 1510
HpaII CCGG 1 cut(s) 1702
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 4 cut(s) 292, 597, 1114, 1510
Hpy188I TCNGA 3 cut(s) 504, 810, 1648
Hpy188III TCNNGA 8 cut(s) 89, 169, 199, 552, 872, 977, 1283, 1730
Hpy8I GTNNAC 4 cut(s) 292, 597, 1114, 1510
Hpy99I CGWCG 3 cut(s) 229, 540, 707
HpyAV CCTTC 3 cut(s) 1094, 1229, 1561
HpyCH4III ACNGT 3 cut(s) 41, 895, 1468
HpyCH4IV ACGT 1 cut(s) 618
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 1130, 1711
HpyF3I CTNAG 5 cut(s) 87, 365, 807, 1017, 1202
HpySE526I ACGT 1 cut(s) 618
HspAI GCGC 1 cut(s) 1026
Ksp22I TGATCA 2 cut(s) 165, 303
KspAI GTTAAC 1 cut(s) 1510
Kzo9I GATC 7 cut(s) 165, 303, 699, 864, 973, 1167, 1312
LmnI GCTCC 2 cut(s) 920, 1474
Lsp1109I GCAGC 2 cut(s) 1652, 1717
LweI GCATC 4 cut(s) 1292, 1333, 1652, 1708
MaeI CTAG 5 cut(s) 143, 714, 765, 1136, 1349
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 5 cut(s) 326, 486, 845, 880, 1183
MalI GATC 7 cut(s) 167, 305, 701, 866, 975, 1169, 1314
MboI GATC 7 cut(s) 165, 303, 699, 864, 973, 1167, 1312
MboII GAAGA 8 cut(s) 53, 56, 124, 187, 1177, 1244, 1271, 1352
MfeI CAATTG 1 cut(s) 1095
MflI RGATCY 1 cut(s) 1312
MhlI GDGCHC 2 cut(s) 913, 925
MluCI AATT 8 cut(s) 818, 1058, 1087, 1095, 1370, 1460, 1674, 1694
MlyI GAGTC 2 cut(s) 182, 740
MmeI TCCRAC 3 cut(s) 424, 1064, 1586
MnlI CCTC 6 cut(s) 69, 96, 169, 639, 661, 846
Mph1103I ATGCAT 1 cut(s) 1307
MroXI GAANNNNTTC 2 cut(s) 453, 1076
MseI TTAA 6 cut(s) 36, 134, 407, 750, 1056, 1509
MslI CAYNNNNRTG 1 cut(s) 854
MspA1I CMGCKG 1 cut(s) 1708
MspI CCGG 1 cut(s) 1702
MspR9I CCNGG 1 cut(s) 1596
MunI CAATTG 1 cut(s) 1095
MvaI CCWGG 1 cut(s) 1596
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 3 cut(s) 254, 1130, 1711
NdeII GATC 7 cut(s) 165, 303, 699, 864, 973, 1167, 1312
NlaIV GGNNCC 5 cut(s) 93, 922, 1399, 1476, 1600
NmuCI GTSAC 4 cut(s) 326, 486, 845, 880
NsiI ATGCAT 1 cut(s) 1307
NspI RCATGY 4 cut(s) 494, 760, 1012, 1516
NspV TTCGAA 1 cut(s) 527
PagI TCATGA 1 cut(s) 198
PceI AGGCCT 1 cut(s) 416
PciI ACATGT 3 cut(s) 490, 1008, 1512
PdmI GAANNNNTTC 2 cut(s) 453, 1076
PfeI GAWTC 2 cut(s) 540, 548
PflMI CCANNNNNTGG 1 cut(s) 1533
PkrI GCNGC 2 cut(s) 1642, 1707
PleI GAGTC 2 cut(s) 182, 739
PpsI GAGTC 2 cut(s) 182, 739
PpuMI RGGWCCY 1 cut(s) 91
PscI ACATGT 3 cut(s) 490, 1008, 1512
Psp5II RGGWCCY 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 1594
PspEI GGTNACC 1 cut(s) 326
PspGI CCWGG 1 cut(s) 1594
PspN4I GGNNCC 5 cut(s) 93, 922, 1399, 1476, 1600
PspPI GGNCC 4 cut(s) 72, 91, 460, 1599
PspPPI RGGWCCY 1 cut(s) 91
PstNI CAGNNNCTG 1 cut(s) 1646
PsuI RGATCY 1 cut(s) 1312
PvuII CAGCTG 1 cut(s) 1708
RseI CAYNNNNRTG 1 cut(s) 854
SaqAI TTAA 6 cut(s) 36, 134, 407, 750, 1056, 1509
SatI GCNGC 2 cut(s) 1641, 1706
Sau3AI GATC 7 cut(s) 165, 303, 699, 864, 973, 1167, 1312
Sau96I GGNCC 4 cut(s) 72, 91, 460, 1599
SchI GAGTC 2 cut(s) 182, 740
ScrFI CCNGG 1 cut(s) 1596
SduI GDGCHC 2 cut(s) 913, 925
SfaNI GCATC 4 cut(s) 1292, 1333, 1652, 1708
SfuI TTCGAA 1 cut(s) 527
SinI GGWCC 2 cut(s) 91, 1599
SmiMI CAYNNNNRTG 1 cut(s) 854
Sse9I AATT 8 cut(s) 818, 1058, 1087, 1095, 1370, 1460, 1674, 1694
SseBI AGGCCT 1 cut(s) 416
SsiI CCGC 6 cut(s) 13, 216, 235, 324, 642, 737
SspMI CTAG 5 cut(s) 143, 714, 765, 1136, 1349
StuI AGGCCT 1 cut(s) 416
StyD4I CCNGG 1 cut(s) 1594
TaaI ACNGT 3 cut(s) 41, 895, 1468
TaiI ACGT 1 cut(s) 621
TaqI TCGA 4 cut(s) 224, 527, 622, 702
TasI AATT 8 cut(s) 818, 1058, 1087, 1095, 1370, 1460, 1674, 1694
TfiI GAWTC 2 cut(s) 540, 548
Tru1I TTAA 6 cut(s) 36, 134, 407, 750, 1056, 1509
Tru9I TTAA 6 cut(s) 36, 134, 407, 750, 1056, 1509
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 4 cut(s) 326, 486, 845, 880
TseI GCWGC 2 cut(s) 1640, 1705
Tsp45I GTSAC 4 cut(s) 326, 486, 845, 880
TspGWI ACGGA 1 cut(s) 1131
TspRI CASTG 1 cut(s) 550
Van91I CCANNNNNTGG 1 cut(s) 1533
VpaK11BI GGWCC 2 cut(s) 91, 1599
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 4 cut(s) 818, 1087, 1370, 1674
XceI RCATGY 4 cut(s) 494, 760, 1012, 1516
XmiI GTMKAC 1 cut(s) 291
XmnI GAANNNNTTC 2 cut(s) 453, 1076
XspI CTAG 5 cut(s) 143, 714, 765, 1136, 1349
Zsp2I ATGCAT 1 cut(s) 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.