Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007075

Physical Location & Seq

Genomic Coordinates Forward (+)

17977003 .. 17979175

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012369

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1899 bp

ATGATTTTGAATCGCGTGAGATATTATTCAACTAACTGTTTCCCAACCCCAAGACCTCATCTTCAACCACCCAAAACCCTCTTGGAGAACCCACCTTCCATAGTTGATAGAATCAGGCAATGTGGTACTCAAACAGAGCTAGAACAGATATGTGCTTCAATGATGAAGACCAACGCAATCCAAGACTCCTTCTTTACAAACCAACTCATCACCGCCTGTTCCTCTCTTTCCTGCCTAGACCACGCAGCTTTAGCCTTTTCCCACATCCAAAACCCAAACATCTTCGTCTACAACGCAATGATCAAAGCCTTTGTTCACTGCGGACACCCATTTCAGGGTTTACACTGTTACATCAATATGTTGAGGAACGGGGTCTTCCCTACCAGCTATACGTTTCCGTCTTTGATCAAGGCTTGTGCCTCGCTTTCTGTGATGGGTTTTGGGGAAGCTGTACATGGCTGTGTTTGGAAAAGTGGGTTTGATTCACATGTGTTTGTGCAGACTGCTTTGATTGATTTGTATTCGAAGCTGGGACGAATTGATGAAGCCCGGAAGGTGTTCGATGAAATGCCTGAGAGAGATGGTTTTGCTTGGACTACAATGGTTTCTTCTCATGCTCGTGTAGGGGATATGAGGTCGGCGAGGACATTGTTTGATGTGATGATGGAAAGGTGTATAGCTAATTCGGCTACTTGGAATACTATGATCGACGGCTATGCGAGACTTGGTGATGTGGAGTCTGCAGAGTTGTTGTTTAATCAAATGCCAACCAGGGATTTGATCTCGTGGACAGCTATGATCAATTGTTATTCTCAGAACAGGAAATTTGGAGAAGCATTAGCAGTGTTTAATGATATGAGGTTGAATGGGGTCAGTCCTGATGCAGTGACCATGTCGACTGTTATTTCGGCTTGTGCTCATCTCGGAGCTCTAGACTTGGGGAAAGGGATTCACTTTTACGTAACGCAGAATGGGTTTGATCTTGATGTTTATATTGGGTCTGCGTTGATTGATATGTATGCGAAATGTGGCACATTGGACAGGGCTCTTGTTGTTTTTTTTAACTTGAGGGATAAGAACTTGTTCTGTTGGAATTCAGTGATTGAAGGGCTTGCAGCTCATGGATTTGCCAAAAAAGCACTAGCAATGTTTAGCAAGATGGAGAGAGAGAAGATCAAGCCAAATGGGATTACTTTTATAAGTGTTTTAAGTGCCTGCACTCATGCCGGGCTTGTTGAAGAAGGCCGTAAGAGATTTTTAAGCATGACCCAAGCTTATTCCATCTCTCCTGGAGTTGAACACTATGGATGCATGGTGGATCTATTAAGCAGAGCTGGCTTGCTCGAAGATGCATTAGAGTTGATAAGAAGCATGAAACTAAAACCAAACTCTGTTATCTGGGGTGCCTTGTTGGGTGGATGTAAACTTCATAGAAATCTGGAGATTGCTAAAGTTTCAGTCAATGAACTGATGGTATTGGAGCCAGAAAATAGTGGGCATTACAACCTTATAGTTAACATGTATGCCGAAGTCAATCGATGGGGAGAAGTTGCAGACATACGAGCAATTATGAAGCAACTGGGAGTAGAGAAAACATCTCCTGGGTCCAGTTGGATTGAAATTGAAAGAAAAATCCATACATTTTCAGCATCTGACAAATCTCATGCAGCTTCTGGTGAAATTTACTTGTTTCTTGCGGAATTATATGGGCAGCTGAAGCTTGATGTTTATCTTCCTGAACTTGGCTCTGACTCTACTAAGAAACTAGGAGAAAGCTTCAGGTTGAATGCTGATCCTCAGAGCCATACTAGAGACAGAAGTCTTGGCTACACCCCCATGGAAGAGAACATGGTTGAATACAGTACAGTTGTAATGCTTTATGACACAAGTTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0019538 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 bHLH-MYC_N

Protein Analysis

633

Amino Acids

70.64

Weight (kDa)

6.45

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	92 - 140	2.5e-10	PPR repeat family
PPR	PF01535	168 - 193	6.4e-06	PPR repeat
PPR_1	PF12854	225 - 255	3.3e-07	PPR repeat
PPR_2	PF13041	228 - 258	7.7e-07	PPR repeat family
PPR	PF01535	231 - 258	3.2e-08	PPR repeat
PPR_2	PF13041	259 - 307	9.3e-14	PPR repeat family
PPR	PF01535	261 - 291	9.1e-08	PPR repeat
PPR_2	PF13041	360 - 407	5.8e-09	PPR repeat family
E_motif	PF20431	477 - 540	6.7e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06143
fragaria_vesca	FvH4_2g21860
malus_domestica	MD05G1200200.v1.1 MD10G1186800.v1.1
prunus_persica	Prupe.8G226200_v2.0.a1
pyrus_communis	pycom05g18700
rosa_chinensis	RchiOBHm_Chr6g0288721 RchiOBHm_Chr6g0288731
rosa_laevigata	RLG00000012369 RLG00000012373 RLG00000012374 RLG00000012381
rosa_multiflora	Rmu_sc0004861.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179910
rosa_rugosa	Rorug06G0197800 Rorug06G0197900 Rorug06G0198000
rosa_samantha	Rh6BG314900 Rh6BG315000 Rh6CG322200 Rh6CG322300 Rh6DG308000 Rh6DG308100
rosa_wichuraiana	Rw6G026720 Rw6G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1199
AccB1I	GGYRCC	1 cut(s)	1403
AccI	GTMKAC	2 cut(s)	288, 896
AccII	CGCG	1 cut(s)	15
AciI	CCGC	3 cut(s)	213, 321, 1697
AclWI	GGATC	2 cut(s)	1326, 1787
AcsI	RAATTY	3 cut(s)	824, 1093, 1680
AcuI	CTGAAG	2 cut(s)	1736, 1762
AfaI	GTAC	3 cut(s)	127, 453, 1864
AfiI	CCNNNNNNNGG	3 cut(s)	334, 335, 1742
AflIII	ACRYGT	2 cut(s)	487, 1518
AjnI	CCWGG	3 cut(s)	770, 1288, 1600
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
Alw21I	GWGCWC	2 cut(s)	919, 931
Alw26I	GTCTC	2 cut(s)	715, 1806
AlwI	GGATC	2 cut(s)	1326, 1787
AlwNI	CAGNNNCTG	2 cut(s)	1652, 1673
AoxI	GGCC	1 cut(s)	1243
ApeKI	GCWGC	4 cut(s)	245, 1115, 1667, 1711
ApoI	RAATTY	3 cut(s)	824, 1093, 1680
ArsI	GACNNNNNNTTYG	2 cut(s)	889, 921
Asp700I	GAANNNNTTC	2 cut(s)	557, 1082
AspS9I	GGNCC	1 cut(s)	1605
AsuC2I	CCSGG	2 cut(s)	550, 1228
AsuHPI	GGTGA	3 cut(s)	202, 740, 1688
AsuII	TTCGAA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	1605
BanI	GGYRCC	1 cut(s)	1403
BanII	GRGCYC	2 cut(s)	931, 1048
BauI	CACGAG	2 cut(s)	618, 784
BbsI	GAAGAC	2 cut(s)	173, 367
Bbv12I	GWGCWC	2 cut(s)	919, 931
BbvI	GCAGC	4 cut(s)	257, 1127, 1679, 1723
BccI	CCATC	7 cut(s)	427, 575, 658, 1153, 1289, 1465, 1533
BceAI	ACGGC	2 cut(s)	727, 1230
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	3 cut(s)	772, 1290, 1602
BclI	TGATCA	3 cut(s)	300, 405, 798
BcnI	CCSGG	2 cut(s)	550, 1228
BcoDI	GTCTC	2 cut(s)	715, 1806
BfaI	CTAG	6 cut(s)	140, 236, 932, 1142, 1766, 1809
BfmI	CTRYAG	1 cut(s)	741
BisI	GCNGC	4 cut(s)	246, 1116, 1668, 1712
BlsI	GCNGC	4 cut(s)	247, 1117, 1669, 1713
Bme1390I	CCNGG	5 cut(s)	550, 772, 1228, 1290, 1602
Bme18I	GGWCC	1 cut(s)	1605
BmgT120I	GGNCC	1 cut(s)	1605
BmiI	GGNNCC	3 cut(s)	1405, 1482, 1606
BmrFI	CCNGG	5 cut(s)	550, 772, 1228, 1290, 1602
BmrI	ACTGGG	1 cut(s)	1589
BmsI	GCATC	4 cut(s)	871, 1298, 1339, 1658
BmuI	ACTGGG	1 cut(s)	1589
BoxI	GACNNNNGTC	1 cut(s)	1818
BpiI	GAAGAC	2 cut(s)	173, 367
BpmI	CTGGAG	2 cut(s)	1311, 1460
Bpu14I	TTCGAA	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	1087
BpuMI	CCSGG	2 cut(s)	550, 1228
Bsa29I	ATCGAT	1 cut(s)	1537
BsaAI	YACGTR	1 cut(s)	961
BsaBI	GATNNNNATC	1 cut(s)	1728
BsaJI	CCNNGG	3 cut(s)	771, 1601, 1836
Bsc4I	CCNNNNNNNGG	3 cut(s)	334, 335, 1742
Bse1I	ACTGG	2 cut(s)	1584, 1608
Bse3DI	GCAATG	3 cut(s)	125, 303, 1152
Bse8I	GATNNNNATC	1 cut(s)	1728
BseBI	CCWGG	3 cut(s)	772, 1290, 1602
BseCI	ATCGAT	1 cut(s)	1537
BseDI	CCNNGG	3 cut(s)	771, 1601, 1836
BseGI	GGATG	3 cut(s)	264, 1313, 1424
BseJI	GATNNNNATC	1 cut(s)	1728
BseLI	CCNNNNNNNGG	3 cut(s)	334, 335, 1742
BseMI	GCAATG	3 cut(s)	125, 303, 1152
BseMII	CTCAG	3 cut(s)	564, 827, 1811
BseNI	ACTGG	2 cut(s)	1584, 1608
BseXI	GCAGC	4 cut(s)	257, 1127, 1679, 1723
BseYI	CCCAGC	1 cut(s)	529
BsgI	GTGCAG	2 cut(s)	518, 1201
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	1245
BshNI	GGYRCC	1 cut(s)	1403
BshVI	ATCGAT	1 cut(s)	1537
BsiHKAI	GWGCWC	2 cut(s)	919, 931
BsiSI	CCGG	2 cut(s)	550, 1227
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	3 cut(s)	334, 335, 1742
BsmAI	GTCTC	2 cut(s)	715, 1806
BsmFI	GGGAC	1 cut(s)	546
BsmI	GAATGC	1 cut(s)	1792
BsnI	GGCC	1 cut(s)	1245
Bsp119I	TTCGAA	1 cut(s)	524
Bsp1286I	GDGCHC	3 cut(s)	919, 931, 1048
Bsp1407I	TGTACA	1 cut(s)	451
Bsp143I	GATC	9 cut(s)	300, 405, 705, 780, 798, 979, 1173, 1318, 1792
Bsp19I	CCATGG	1 cut(s)	1836
BspACI	CCGC	3 cut(s)	213, 321, 1697
BspANI	GGCC	1 cut(s)	1245
BspCNI	CTCAG	3 cut(s)	565, 826, 1810
BspDI	ATCGAT	1 cut(s)	1537
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	3 cut(s)	1405, 1482, 1606
BspMAI	CTGCAG	1 cut(s)	745
BspPI	GGATC	2 cut(s)	1326, 1787
BspT104I	TTCGAA	1 cut(s)	524
BspT107I	GGYRCC	1 cut(s)	1403
BsrDI	GCAATG	3 cut(s)	125, 303, 1152
BsrGI	TGTACA	1 cut(s)	451
BsrI	ACTGG	2 cut(s)	1584, 1608
BssECI	CCNNGG	3 cut(s)	771, 1601, 1836
BssMI	GATC	9 cut(s)	300, 405, 705, 780, 798, 979, 1173, 1318, 1792
BssSI	CACGAG	2 cut(s)	618, 784
BssT1I	CCWWGG	1 cut(s)	1836
Bst2BI	CACGAG	2 cut(s)	618, 784
Bst2UI	CCWGG	3 cut(s)	772, 1290, 1602
Bst4CI	ACNGT	5 cut(s)	38, 347, 901, 1862, 1867
Bst6I	CTCTTC	1 cut(s)	1836
BstAUI	TGTACA	1 cut(s)	451
BstBAI	YACGTR	1 cut(s)	961
BstBI	TTCGAA	1 cut(s)	524
BstC8I	GCNNGC	4 cut(s)	1113, 1216, 1336, 1340
BstDEI	CTNAG	4 cut(s)	573, 813, 1758, 1797
BstDSI	CCRYGG	1 cut(s)	1836
BstF5I	GGATG	3 cut(s)	264, 1313, 1424
BstFNI	CGCG	1 cut(s)	15
BstKTI	GATC	9 cut(s)	303, 408, 708, 783, 801, 982, 1176, 1321, 1795
BstMAI	GTCTC	2 cut(s)	715, 1806
BstMBI	GATC	9 cut(s)	300, 405, 705, 780, 798, 979, 1173, 1318, 1792
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 686, 1136, 1335, 1717
BstNI	CCWGG	3 cut(s)	772, 1290, 1602
BstNSI	RCATGY	2 cut(s)	491, 1522
BstPAI	GACNNNNGTC	1 cut(s)	1818
BstSCI	CCNGG	5 cut(s)	548, 770, 1226, 1288, 1600
BstSFI	CTRYAG	1 cut(s)	741
BstSNI	TACGTA	1 cut(s)	961
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	4 cut(s)	257, 1127, 1679, 1723
BstV2I	GAAGAC	2 cut(s)	173, 367
BstX2I	RGATCY	1 cut(s)	1318
BstYI	RGATCY	1 cut(s)	1318
Bsu15I	ATCGAT	1 cut(s)	1537
BsuRI	GGCC	1 cut(s)	1245
BsuTUI	ATCGAT	1 cut(s)	1537
BtgI	CCRYGG	1 cut(s)	1836
BtsCI	GGATG	3 cut(s)	264, 1313, 1424
BtsI	GCAGTG	3 cut(s)	316, 849, 891
BtsIMutI	CAGTG	5 cut(s)	316, 343, 849, 891, 1104
Cac8I	GCNNGC	4 cut(s)	1113, 1216, 1336, 1340
CaiI	CAGNNNCTG	2 cut(s)	1652, 1673
Cfr13I	GGNCC	1 cut(s)	1605
ClaI	ATCGAT	1 cut(s)	1537
Csp6I	GTAC	3 cut(s)	126, 452, 1863
CviQI	GTAC	3 cut(s)	126, 452, 1863
DdeI	CTNAG	4 cut(s)	573, 813, 1758, 1797
DpnI	GATC	9 cut(s)	302, 407, 707, 782, 800, 981, 1175, 1320, 1794
DpnII	GATC	9 cut(s)	300, 405, 705, 780, 798, 979, 1173, 1318, 1792
Eam1104I	CTCTTC	1 cut(s)	1836
EarI	CTCTTC	1 cut(s)	1836
Ecl136II	GAGCTC	1 cut(s)	929
Eco105I	TACGTA	1 cut(s)	961
Eco130I	CCWWGG	1 cut(s)	1836
Eco24I	GRGCYC	2 cut(s)	931, 1048
Eco47I	GGWCC	1 cut(s)	1605
Eco53kI	GAGCTC	1 cut(s)	929
Eco57I	CTGAAG	2 cut(s)	1736, 1762
EcoICRI	GAGCTC	1 cut(s)	929
EcoRI	GAATTC	1 cut(s)	1093
EcoRII	CCWGG	3 cut(s)	770, 1288, 1600
EcoT14I	CCWWGG	1 cut(s)	1836
EcoT22I	ATGCAT	2 cut(s)	1313, 1354
EcoT38I	GRGCYC	2 cut(s)	931, 1048
ErhI	CCWWGG	1 cut(s)	1836
FaqI	GGGAC	1 cut(s)	546
FbaI	TGATCA	3 cut(s)	300, 405, 798
FblI	GTMKAC	2 cut(s)	288, 896
Fnu4HI	GCNGC	4 cut(s)	246, 1116, 1668, 1712
FokI	GGATG	3 cut(s)	251, 1320, 1431
FriOI	GRGCYC	2 cut(s)	931, 1048
Fsp4HI	GCNGC	4 cut(s)	246, 1116, 1668, 1712
FspBI	CTAG	6 cut(s)	140, 236, 932, 1142, 1766, 1809
GluI	GCNGC	4 cut(s)	246, 1116, 1668, 1712
GsaI	CCCAGC	1 cut(s)	533
GsuI	CTGGAG	2 cut(s)	1311, 1460
HaeIII	GGCC	1 cut(s)	1245
HapII	CCGG	2 cut(s)	550, 1227
HincII	GTYRAC	2 cut(s)	897, 1516
HindII	GTYRAC	2 cut(s)	897, 1516
HindIII	AAGCTT	3 cut(s)	1272, 1718, 1774
HinfI	GANTC	7 cut(s)	10, 111, 185, 482, 737, 949, 1751
HpaI	GTTAAC	1 cut(s)	1516
HpaII	CCGG	2 cut(s)	550, 1227
HphI	GGTGA	3 cut(s)	202, 740, 1688
Hpy166II	GTNNAC	7 cut(s)	289, 316, 341, 789, 897, 1424, 1516
Hpy188I	TCNGA	6 cut(s)	816, 926, 1654, 1750, 1800, 1895
Hpy188III	TCNNGA	5 cut(s)	878, 932, 983, 1439, 1736
Hpy8I	GTNNAC	7 cut(s)	289, 316, 341, 789, 897, 1424, 1516
Hpy99I	CGWCG	1 cut(s)	713
HpyAV	CCTTC	5 cut(s)	105, 199, 547, 1100, 1235
HpyCH4III	ACNGT	5 cut(s)	38, 347, 901, 1862, 1867
HpyCH4IV	ACGT	2 cut(s)	392, 960
HpyCH4V	TGCA	9 cut(s)	499, 743, 884, 1115, 1218, 1311, 1352, 1553, 1667
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 686, 1136, 1335, 1717
HpyF3I	CTNAG	4 cut(s)	573, 813, 1758, 1797
HpySE526I	ACGT	2 cut(s)	392, 960
Ksp22I	TGATCA	3 cut(s)	300, 405, 798
KspAI	GTTAAC	1 cut(s)	1516
Kzo9I	GATC	9 cut(s)	300, 405, 705, 780, 798, 979, 1173, 1318, 1792
LmnI	GCTCC	2 cut(s)	926, 1480
Lsp1109I	GCAGC	4 cut(s)	257, 1127, 1679, 1723
LweI	GCATC	4 cut(s)	871, 1298, 1339, 1658
MaeI	CTAG	6 cut(s)	140, 236, 932, 1142, 1766, 1809
MaeII	ACGT	2 cut(s)	392, 960
MaeIII	GTNAC	3 cut(s)	347, 886, 961
MalI	GATC	9 cut(s)	302, 407, 707, 782, 800, 981, 1175, 1320, 1794
MboI	GATC	9 cut(s)	300, 405, 705, 780, 798, 979, 1173, 1318, 1792
MfeI	CAATTG	1 cut(s)	802
MflI	RGATCY	1 cut(s)	1318
MhlI	GDGCHC	3 cut(s)	919, 931, 1048
MluCI	AATT	9 cut(s)	537, 682, 802, 824, 1093, 1566, 1620, 1680, 1700
MlyI	GAGTC	3 cut(s)	179, 746, 1745
MmeI	TCCRAC	2 cut(s)	1070, 1592
Mph1103I	ATGCAT	2 cut(s)	1313, 1354
MroXI	GAANNNNTTC	2 cut(s)	557, 1082
MseI	TTAA	7 cut(s)	756, 849, 1062, 1208, 1259, 1325, 1515
MslI	CAYNNNNRTG	4 cut(s)	356, 459, 618, 1835
MspA1I	CMGCKG	1 cut(s)	1714
MspI	CCGG	2 cut(s)	550, 1227
MspR9I	CCNGG	5 cut(s)	550, 772, 1228, 1290, 1602
MunI	CAATTG	1 cut(s)	802
Mva1269I	GAATGC	1 cut(s)	1792
MvaI	CCWGG	3 cut(s)	772, 1290, 1602
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	5 cut(s)	251, 686, 1136, 1335, 1717
NciI	CCSGG	2 cut(s)	550, 1228
NcoI	CCATGG	1 cut(s)	1836
NdeII	GATC	9 cut(s)	300, 405, 705, 780, 798, 979, 1173, 1318, 1792
NlaIV	GGNNCC	3 cut(s)	1405, 1482, 1606
NmuCI	GTSAC	1 cut(s)	886
NsiI	ATGCAT	2 cut(s)	1313, 1354
NspI	RCATGY	2 cut(s)	491, 1522
NspV	TTCGAA	1 cut(s)	524
PciI	ACATGT	2 cut(s)	487, 1518
PctI	GAATGC	1 cut(s)	1792
PdmI	GAANNNNTTC	2 cut(s)	557, 1082
PfeI	GAWTC	4 cut(s)	10, 111, 482, 949
PflFI	GACNNNGTC	1 cut(s)	892
PfoI	TCCNGGA	1 cut(s)	1288
PkrI	GCNGC	4 cut(s)	247, 1117, 1669, 1713
PleI	GAGTC	3 cut(s)	179, 745, 1745
PpsI	GAGTC	3 cut(s)	179, 745, 1745
Ppu21I	YACGTR	1 cut(s)	961
PscI	ACATGT	2 cut(s)	487, 1518
PshAI	GACNNNNGTC	1 cut(s)	1818
PsiI	TTATAA	1 cut(s)	1199
Psp124BI	GAGCTC	1 cut(s)	931
Psp6I	CCWGG	3 cut(s)	770, 1288, 1600
PspFI	CCCAGC	1 cut(s)	529
PspGI	CCWGG	3 cut(s)	770, 1288, 1600
PspN4I	GGNNCC	3 cut(s)	1405, 1482, 1606
PspPI	GGNCC	1 cut(s)	1605
PstI	CTGCAG	1 cut(s)	745
PstNI	CAGNNNCTG	2 cut(s)	1652, 1673
PsuI	RGATCY	1 cut(s)	1318
PsyI	GACNNNGTC	1 cut(s)	892
PvuII	CAGCTG	1 cut(s)	1714
RsaI	GTAC	3 cut(s)	127, 453, 1864
RsaNI	GTAC	3 cut(s)	126, 452, 1863
RseI	CAYNNNNRTG	4 cut(s)	356, 459, 618, 1835
SacI	GAGCTC	1 cut(s)	931
SalI	GTCGAC	1 cut(s)	895
SaqAI	TTAA	7 cut(s)	756, 849, 1062, 1208, 1259, 1325, 1515
SatI	GCNGC	4 cut(s)	246, 1116, 1668, 1712
Sau3AI	GATC	9 cut(s)	300, 405, 705, 780, 798, 979, 1173, 1318, 1792
Sau96I	GGNCC	1 cut(s)	1605
SchI	GAGTC	3 cut(s)	179, 746, 1745
ScrFI	CCNGG	5 cut(s)	550, 772, 1228, 1290, 1602
SduI	GDGCHC	3 cut(s)	919, 931, 1048
SfaNI	GCATC	4 cut(s)	871, 1298, 1339, 1658
SfcI	CTRYAG	1 cut(s)	741
SfuI	TTCGAA	1 cut(s)	524
SinI	GGWCC	1 cut(s)	1605
SmiMI	CAYNNNNRTG	4 cut(s)	356, 459, 618, 1835
SmlI	CTYRAG	1 cut(s)	1066
SmoI	CTYRAG	1 cut(s)	1066
SnaBI	TACGTA	1 cut(s)	961
Sse9I	AATT	9 cut(s)	537, 682, 802, 824, 1093, 1566, 1620, 1680, 1700
SsiI	CCGC	3 cut(s)	213, 321, 1697
SspMI	CTAG	6 cut(s)	140, 236, 932, 1142, 1766, 1809
SstI	GAGCTC	1 cut(s)	931
StyD4I	CCNGG	5 cut(s)	548, 770, 1226, 1288, 1600
StyI	CCWWGG	1 cut(s)	1836
TaaI	ACNGT	5 cut(s)	38, 347, 901, 1862, 1867
TaiI	ACGT	2 cut(s)	395, 963
TaqI	TCGA	6 cut(s)	524, 561, 708, 896, 1344, 1537
TasI	AATT	9 cut(s)	537, 682, 802, 824, 1093, 1566, 1620, 1680, 1700
TatI	WGTACW	2 cut(s)	451, 1862
TfiI	GAWTC	4 cut(s)	10, 111, 482, 949
Tru1I	TTAA	7 cut(s)	756, 849, 1062, 1208, 1259, 1325, 1515
Tru9I	TTAA	7 cut(s)	756, 849, 1062, 1208, 1259, 1325, 1515
TscAI	CASTG	5 cut(s)	323, 350, 849, 891, 1104
TseFI	GTSAC	1 cut(s)	886
TseI	GCWGC	4 cut(s)	245, 1115, 1667, 1711
Tsp45I	GTSAC	1 cut(s)	886
TspDTI	ATGAA	7 cut(s)	179, 558, 579, 1388, 1418, 1479, 1586
TspGWI	ACGGA	1 cut(s)	387
TspRI	CASTG	5 cut(s)	323, 350, 849, 891, 1104
Tth111I	GACNNNGTC	1 cut(s)	892
VpaK11BI	GGWCC	1 cut(s)	1605
XapI	RAATTY	3 cut(s)	824, 1093, 1680
XbaI	TCTAGA	1 cut(s)	931
XceI	RCATGY	2 cut(s)	491, 1522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmiI	GTMKAC	2 cut(s)	288, 896
XmnI	GAANNNNTTC	2 cut(s)	557, 1082
XspI	CTAG	6 cut(s)	140, 236, 932, 1142, 1766, 1809
Zsp2I	ATGCAT	2 cut(s)	1313, 1354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.