Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007075

Physical Location & Seq

Genomic Coordinates Reverse (-)

31859389 .. 31859871

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0197900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTTATAAGACCCCTCCTGATAGCTCTGCTGATCCTCTCGATCTTGGAAATCTCGGCCACCGTGAGGCCTTGCAAGACCCTCTTCATCTCCTACTACTCCGTCTCCCTCAGGCGCCTCCCCTCCTCTTCCTCTTCCTCCTCCCCGGGATTCGTCACTGTCGTCACTGAGATCAGAGACCTCAAGCCCATCCACTTCGATAACGGCGTTTTGGTCCAGCCGGACGACGCCGCCTCCACCGATGAGGTCCGCCAGCCACAGCAGAGGATGATGCCTCTCCTCCATCTCTCCACCGACCTCAGCTCTGCCCGCGACCGGAAAAAGGTCAAAAACCAGATCTCCTCTGCTGGTAGGATAACGGGGACTTTAACGTTATTGAGAGAGAAAGCATCTAAATGTGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0019538 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 bHLH-MYC_N

Protein Analysis

135

Amino Acids

14.92

Weight (kDa)

9.75

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06143
fragaria_vesca	FvH4_2g21860
malus_domestica	MD05G1200200.v1.1 MD10G1186800.v1.1
prunus_persica	Prupe.8G226200_v2.0.a1
pyrus_communis	pycom05g18700
rosa_chinensis	RchiOBHm_Chr6g0288721 RchiOBHm_Chr6g0288731
rosa_laevigata	RLG00000012369 RLG00000012373 RLG00000012374 RLG00000012381
rosa_multiflora	Rmu_sc0004861.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179910
rosa_rugosa	Rorug06G0197800 Rorug06G0197900 Rorug06G0198000
rosa_samantha	Rh6BG314900 Rh6BG315000 Rh6CG322200 Rh6CG322300 Rh6DG308000 Rh6DG308100
rosa_wichuraiana	Rw6G026720 Rw6G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	114
AccII	CGCG	1 cut(s)	312
AciI	CCGC	3 cut(s)	231, 250, 310
AclI	AACGTT	1 cut(s)	371
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	57
AcyI	GRCGYC	2 cut(s)	115, 228
AfiI	CCNNNNNNNGG	3 cut(s)	66, 315, 322
AluBI	AGCT	2 cut(s)	26, 303
AluI	AGCT	2 cut(s)	26, 303
Alw26I	GTCTC	2 cut(s)	109, 171
AlwI	GGATC	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	2 cut(s)	57, 68
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	2 cut(s)	214, 247
AsuC2I	CCSGG	2 cut(s)	146, 147
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	214, 247
AxyI	CCTNAGG	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	114
BbvCI	CCTCAGC	1 cut(s)	299
BccI	CCATC	2 cut(s)	197, 291
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	2 cut(s)	146, 147
BcoDI	GTCTC	2 cut(s)	109, 171
BfoI	RGCGCY	1 cut(s)	118
BglII	AGATCT	1 cut(s)	336
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	146, 147
Bme18I	GGWCC	2 cut(s)	214, 247
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	214, 247
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	2 cut(s)	146, 147
BmsI	GCATC	2 cut(s)	261, 398
Bpu10I	CCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	2 cut(s)	146, 147
BsaHI	GRCGYC	2 cut(s)	115, 228
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	144, 145
BsaWI	WCCGGW	1 cut(s)	315
BsaXI	ACNNNNNCTCC	6 cut(s)	89, 119, 218, 248, 323, 353
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 315, 322
Bse21I	CCTNAGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	144, 145
BseGI	GGATG	2 cut(s)	189, 273
BseLI	CCNNNNNNNGG	3 cut(s)	66, 315, 322
BseMII	CTCAG	3 cut(s)	124, 159, 313
BseRI	GAGGAG	4 cut(s)	115, 130, 269, 331
Bsh1236I	CGCG	1 cut(s)	312
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	2 cut(s)	59, 70
BshNI	GGYRCC	1 cut(s)	114
BsiEI	CGRYCG	1 cut(s)	316
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	3 cut(s)	146, 221, 316
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	3 cut(s)	66, 315, 322
BsmAI	GTCTC	2 cut(s)	109, 171
BsmBI	CGTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	376
BsnI	GGCC	2 cut(s)	59, 70
Bso31I	GGTCTC	1 cut(s)	171
BsoBI	CYCGRG	1 cut(s)	145
Bsp143I	GATC	4 cut(s)	33, 42, 171, 336
BspACI	CCGC	3 cut(s)	231, 250, 310
BspANI	GGCC	2 cut(s)	59, 70
BspCNI	CTCAG	3 cut(s)	123, 160, 312
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	144, 145
BssMI	GATC	4 cut(s)	33, 42, 171, 336
BssNI	GRCGYC	2 cut(s)	115, 228
Bst4CI	ACNGT	2 cut(s)	64, 160
Bst6I	CTCTTC	3 cut(s)	89, 133, 139
BstACI	GRCGYC	2 cut(s)	115, 228
BstC8I	GCNNGC	2 cut(s)	254, 310
BstDEI	CTNAG	3 cut(s)	110, 168, 299
BstF5I	GGATG	2 cut(s)	189, 273
BstFNI	CGCG	1 cut(s)	312
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	4 cut(s)	36, 45, 174, 339
BstMAI	GTCTC	2 cut(s)	109, 171
BstMBI	GATC	4 cut(s)	33, 42, 171, 336
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstSCI	CCNGG	2 cut(s)	144, 145
BstUI	CGCG	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
Bsu36I	CCTNAGG	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	59, 70
BtsCI	GGATG	2 cut(s)	189, 273
BtsIMutI	CAGTG	2 cut(s)	156, 165
Cac8I	GCNNGC	2 cut(s)	254, 310
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	214, 247
Cfr9I	CCCGGG	1 cut(s)	145
CseI	GACGC	1 cut(s)	236
CviJI	RGCY	7 cut(s)	26, 59, 70, 187, 220, 256, 303
CviKI_1	RGCY	7 cut(s)	26, 59, 70, 187, 220, 256, 303
DdeI	CTNAG	3 cut(s)	110, 168, 299
DinI	GGCGCC	1 cut(s)	116
DpnI	GATC	4 cut(s)	35, 44, 173, 338
DpnII	GATC	4 cut(s)	33, 42, 171, 336
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	3 cut(s)	89, 133, 139
EarI	CTCTTC	3 cut(s)	89, 133, 139
EciI	GGCGGA	1 cut(s)	239
Eco147I	AGGCCT	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	171
Eco47I	GGWCC	2 cut(s)	214, 247
Eco81I	CCTNAGG	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	145
EgeI	GGCGCC	1 cut(s)	116
EheI	GGCGCC	1 cut(s)	116
Esp3I	CGTCTC	1 cut(s)	109
FaiI	YATR	1 cut(s)	8
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	1 cut(s)	376
FauI	CCCGC	1 cut(s)	317
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	2 cut(s)	176, 280
Fsp4HI	GCNGC	1 cut(s)	231
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	59, 70
HapII	CCGG	3 cut(s)	146, 221, 316
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	117
Hin1I	GRCGYC	2 cut(s)	115, 228
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	150
HpaII	CCGG	3 cut(s)	146, 221, 316
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	2 cut(s)	19, 40
Hpy99I	CGWCG	1 cut(s)	230
HpyCH4III	ACNGT	2 cut(s)	64, 160
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	3 cut(s)	110, 168, 299
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	2 cut(s)	115, 228
HspAI	GCGC	1 cut(s)	115
KasI	GGCGCC	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	33, 42, 171, 336
LpnPI	CCDG	9 cut(s)	32, 97, 159, 230, 234, 266, 329, 333, 347
LweI	GCATC	2 cut(s)	261, 398
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	3 cut(s)	154, 163, 398
MalI	GATC	4 cut(s)	35, 44, 173, 338
MboI	GATC	4 cut(s)	33, 42, 171, 336
MboII	GAAGA	3 cut(s)	76, 120, 126
MflI	RGATCY	1 cut(s)	336
Mly113I	GGCGCC	1 cut(s)	115
MseI	TTAA	1 cut(s)	368
MslI	CAYNNNNRTG	1 cut(s)	394
MspI	CCGG	3 cut(s)	146, 221, 316
MspR9I	CCNGG	2 cut(s)	146, 147
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	309
NarI	GGCGCC	1 cut(s)	115
NciI	CCSGG	2 cut(s)	146, 147
NdeII	GATC	4 cut(s)	33, 42, 171, 336
NlaIV	GGNNCC	1 cut(s)	116
NmeAIII	GCCGAG	1 cut(s)	35
NmuCI	GTSAC	3 cut(s)	154, 163, 398
PceI	AGGCCT	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 204
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	232
PluTI	GGCGCC	1 cut(s)	118
PsiI	TTATAA	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	2 cut(s)	214, 247
PsuI	RGATCY	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	4 cut(s)	33, 42, 171, 336
Sau96I	GGNCC	2 cut(s)	214, 247
ScrFI	CCNGG	2 cut(s)	146, 147
SetI	ASST	7 cut(s)	28, 183, 249, 300, 305, 327, 374
SfaNI	GCATC	2 cut(s)	261, 398
SfoI	GGCGCC	1 cut(s)	116
SinI	GGWCC	2 cut(s)	214, 247
SmaI	CCCGGG	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	394
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SseBI	AGGCCT	1 cut(s)	70
SsiI	CCGC	3 cut(s)	231, 250, 310
SspDI	GGCGCC	1 cut(s)	114
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	2 cut(s)	144, 145
TaaI	ACNGT	2 cut(s)	64, 160
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	2 cut(s)	41, 198
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	2 cut(s)	163, 172
TseFI	GTSAC	3 cut(s)	154, 163, 398
Tsp45I	GTSAC	3 cut(s)	154, 163, 398
TspDTI	ATGAA	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	91
TspMI	CCCGGG	1 cut(s)	145
TspRI	CASTG	2 cut(s)	163, 172
VpaK11BI	GGWCC	2 cut(s)	214, 247
XmaI	CCCGGG	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.