Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007075

Physical Location & Seq

Genomic Coordinates Reverse (-)

31856982 .. 31857428

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0197800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCGTCGGTTCAACGCCAATCGAGCTCCGGCTCCGATGGATCTGTGGTGGATGACAAGAAGAGGAAGAAGATGCAGTCCAATTGCGAATCGGCCCGGCGATCGCAGATGAAGAAGCAGAAGCGTGTGGAGGAGCTGACGGTGGAGATCAGCTGGCTCCAGATCTCGAACAGCCAAATCCGGCAGAGCATCGACGCCAAGGACAAAGCCTACAGCGAGGTGGAGGCCTGGAACAATGTCATGAGGGCTCAGGAGAAGGAGCTGACTGATCGACTTCGCTACTTGGAGTCGATTGAACAGACTTTTGTGGAGTTCAGCGGTGTCTTCGATAAGGACATTAACGACTTGGCTGAGATGCATGACTCTCTGCTCAATCCGTGGCAGCTTCCTTACTCGACTCAGCCGATCACTGCTTCTTCTACTGATATGTTTCTCGATTGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0019538 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 bHLH-MYC_N

Protein Analysis

148

Amino Acids

17.14

Weight (kDa)

5.11

Isoelectric Point (pI)

68.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	19 - 73	1.6e-07	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06143
fragaria_vesca	FvH4_2g21860
malus_domestica	MD05G1200200.v1.1 MD10G1186800.v1.1
prunus_persica	Prupe.8G226200_v2.0.a1
pyrus_communis	pycom05g18700
rosa_chinensis	RchiOBHm_Chr6g0288721 RchiOBHm_Chr6g0288731
rosa_laevigata	RLG00000012369 RLG00000012373 RLG00000012374 RLG00000012381
rosa_multiflora	Rmu_sc0004861.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179910
rosa_rugosa	Rorug06G0197800 Rorug06G0197900 Rorug06G0198000
rosa_samantha	Rh6BG314900 Rh6BG315000 Rh6CG322200 Rh6CG322300 Rh6DG308000 Rh6DG308100
rosa_wichuraiana	Rw6G026720 Rw6G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	318
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	14, 296
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	5 cut(s)	27, 136, 153, 262, 385
AluI	AGCT	5 cut(s)	27, 136, 153, 262, 385
Alw21I	GWGCWC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	49
AoxI	GGCC	3 cut(s)	93, 225, 440
ApeKI	GCWGC	1 cut(s)	382
AsiSI	GCGATCGC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	442
BanII	GRGCYC	2 cut(s)	29, 250
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	97
BfmI	CTRYAG	1 cut(s)	211
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	1 cut(s)	383
BlsI	GCNGC	1 cut(s)	384
Bme1390I	CCNGG	2 cut(s)	97, 229
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	2 cut(s)	34, 158
BmrFI	CCNGG	2 cut(s)	97, 229
BmsI	GCATC	3 cut(s)	63, 198, 345
BpiI	GAAGAC	1 cut(s)	316
BpmI	CTGGAG	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	198, 377
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	198, 377
BseGI	GGATG	1 cut(s)	58
BseMII	CTCAG	3 cut(s)	263, 342, 413
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	394
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	3 cut(s)	95, 227, 442
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	3 cut(s)	30, 97, 181
BsnI	GGCC	3 cut(s)	95, 227, 442
Bsp1286I	GDGCHC	2 cut(s)	29, 250
Bsp143I	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	3 cut(s)	95, 227, 442
BspCNI	CTCAG	3 cut(s)	262, 343, 412
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	34, 158
BspPI	GGATC	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	198, 377
BssMI	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	3 cut(s)	249, 351, 399
BstDSI	CCRYGG	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	6 cut(s)	44, 104, 150, 165, 271, 408
BstMBI	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	95, 227
BstSFI	CTRYAG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	2 cut(s)	41, 162
BstYI	RGATCY	2 cut(s)	41, 162
BsuRI	GGCC	3 cut(s)	95, 227, 442
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	58
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	155
CciI	TCATGA	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	1 cut(s)	203
CviAII	CATG	3 cut(s)	241, 359, 444
DdeI	CTNAG	3 cut(s)	249, 351, 399
DpnI	GATC	6 cut(s)	43, 103, 149, 164, 270, 407
DpnII	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
EaeI	YGGCCR	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	227
Eco24I	GRGCYC	2 cut(s)	29, 250
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	360
EcoT38I	GRGCYC	2 cut(s)	29, 250
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	3 cut(s)	244, 362, 447
FaiI	YATR	4 cut(s)	242, 360, 428, 445
FatI	CATG	3 cut(s)	240, 358, 443
Fnu4HI	GCNGC	1 cut(s)	383
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	2 cut(s)	29, 250
Fsp4HI	GCNGC	1 cut(s)	383
GluI	GCNGC	1 cut(s)	383
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	3 cut(s)	95, 227, 442
HapII	CCGG	3 cut(s)	30, 97, 181
HgaI	GACGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	244, 362, 447
HinfI	GANTC	4 cut(s)	89, 287, 362, 397
HpaII	CCGG	3 cut(s)	30, 97, 181
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	5 cut(s)	160, 166, 241, 251, 434
Hpy99I	CGWCG	2 cut(s)	10, 197
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	2 cut(s)	76, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	3 cut(s)	249, 351, 399
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	244, 362, 447
Kzo9I	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
LmnI	GCTCC	5 cut(s)	32, 38, 133, 162, 259
LpnPI	CCDG	8 cut(s)	43, 110, 139, 173, 194, 214, 236, 241
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	3 cut(s)	63, 198, 345
MalI	GATC	6 cut(s)	43, 103, 149, 164, 270, 407
MboI	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
MboII	GAAGA	6 cut(s)	73, 79, 82, 124, 316, 408
MfeI	CAATTG	1 cut(s)	82
MflI	RGATCY	2 cut(s)	41, 162
MhlI	GDGCHC	2 cut(s)	29, 250
MlsI	TGGCCA	1 cut(s)	442
MluCI	AATT	1 cut(s)	82
MluNI	TGGCCA	1 cut(s)	442
MlyI	GAGTC	3 cut(s)	296, 356, 391
MnlI	CCTC	5 cut(s)	57, 124, 211, 217, 237
Mox20I	TGGCCA	1 cut(s)	442
Mph1103I	ATGCAT	1 cut(s)	360
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	442
MspA1I	CMGCKG	2 cut(s)	153, 318
MspI	CCGG	3 cut(s)	30, 97, 181
MspR9I	CCNGG	2 cut(s)	97, 229
MunI	CAATTG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
NlaIII	CATG	3 cut(s)	244, 362, 447
NlaIV	GGNNCC	2 cut(s)	34, 158
NsiI	ATGCAT	1 cut(s)	360
PagI	TCATGA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	384
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	3 cut(s)	295, 356, 391
PpsI	GAGTC	3 cut(s)	295, 356, 391
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	34, 158
PspPI	GGNCC	1 cut(s)	94
PsuI	RGATCY	2 cut(s)	41, 162
PvuI	CGATCG	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	153
RgaI	GCGATCGC	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	1 cut(s)	383
Sau3AI	GATC	6 cut(s)	41, 101, 147, 162, 268, 405
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	3 cut(s)	296, 356, 391
ScrFI	CCNGG	2 cut(s)	97, 229
SduI	GDGCHC	2 cut(s)	29, 250
SetI	ASST	6 cut(s)	29, 138, 155, 222, 264, 387
SfaAI	GCGATCGC	1 cut(s)	104
SfaNI	GCATC	3 cut(s)	63, 198, 345
SfcI	CTRYAG	1 cut(s)	211
SgfI	GCGATCGC	1 cut(s)	104
Sse9I	AATT	1 cut(s)	82
SseBI	AGGCCT	1 cut(s)	227
SsiI	CCGC	1 cut(s)	318
SstI	GAGCTC	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	227
StyD4I	CCNGG	2 cut(s)	95, 227
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	8 cut(s)	23, 167, 192, 271, 290, 327, 395, 435
TasI	AATT	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	125
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	415
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.