Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007075

Physical Location & Seq

Genomic Coordinates Forward (+)

18019242 .. 18020334

Gene Structure 1093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012374

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGACCCAAGCTTATTCCATCTCTCCGGGAGTTGAACACTATGGATGCATGGTGGATCTATTAAGCAGAGCTGGCTTGCCCGAAGATGCATTAGAGTTGATAAGAAGCATGAAACTAAAACCAAACTCTGTTATCTGGGGTGCCTTGTTGGGTGGATGTAAACTTCATAGAAATCTGGAGATTGCTAAAGTTTCAGTCAATGAACTGATGGTATTGGAGCCAGAAAATAGTGGGCATTACAACCTTATAGTTAACATGTATGCCGAAGTCAATCGATGGGGAGAAGTTGCAGACATACGAGCAATTATGAAGCAACTGGGAGTAGAGAAAACATCTCCTGGGTCCAGTTGGATTGAAATTGAAAGAAAAATCCATACATTTTCAGCATCTGACAAATCTCATGCAGCTTCTGGTGAAATTTACTTGTTTCTTGCGGAATTATATGGTCAGCTGAAGCTTGATGTTTATCTTCCTGAACTTGGCTCTGACTTTACTAAGAAACTAGGAGAAAGCTTCAGGTTGAATGCTGATCCTCAGAGCCATACTAGAGACAGAAGTCTTGGCTACACCCCCATGGAAGAGAACATGGTCGGGGTGGCTGGTGGTGTTGACATCCGGCAGAAAATGCTTGTTTTATGCCTTGGGGTAGTGGCCGCAGCTCGTATTCATTTAGTAATTCTACACCTTCTTCATTCTTGGACCTCACTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0019538 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 bHLH-MYC_N

Protein Analysis

238

Amino Acids

26.34

Weight (kDa)

6.14

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	56 - 119	1.5e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06143
fragaria_vesca	FvH4_2g21860
malus_domestica	MD05G1200200.v1.1 MD10G1186800.v1.1
prunus_persica	Prupe.8G226200_v2.0.a1
pyrus_communis	pycom05g18700
rosa_chinensis	RchiOBHm_Chr6g0288721 RchiOBHm_Chr6g0288731
rosa_laevigata	RLG00000012369 RLG00000012373 RLG00000012374 RLG00000012381
rosa_multiflora	Rmu_sc0004861.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179910
rosa_rugosa	Rorug06G0197800 Rorug06G0197900 Rorug06G0198000
rosa_samantha	Rh6BG314900 Rh6BG315000 Rh6CG322200 Rh6CG322300 Rh6DG308000 Rh6DG308100
rosa_wichuraiana	Rw6G026720 Rw6G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AciI	CCGC	2 cut(s)	434, 654
AclWI	GGATC	2 cut(s)	63, 524
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	1 cut(s)	417
AcuI	CTGAAG	2 cut(s)	473, 499
AfiI	CCNNNNNNNGG	1 cut(s)	479
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	4 cut(s)	35, 356, 362, 523
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	7 cut(s)	11, 71, 407, 451, 457, 513, 659
AluI	AGCT	7 cut(s)	11, 71, 407, 451, 457, 513, 659
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	2 cut(s)	63, 524
AlwNI	CAGNNNCTG	2 cut(s)	389, 410
AoxI	GGCC	1 cut(s)	651
ApeKI	GCWGC	2 cut(s)	404, 656
ApoI	RAATTY	1 cut(s)	417
AspS9I	GGNCC	2 cut(s)	342, 699
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	425
AvaII	GGWCC	2 cut(s)	342, 699
BanI	GGYRCC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	416, 668
BccI	CCATC	3 cut(s)	26, 202, 270
BciT130I	CCWGG	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	543
BfaI	CTAG	3 cut(s)	503, 546, 712
BisI	GCNGC	3 cut(s)	405, 654, 657
BlsI	GCNGC	3 cut(s)	406, 655, 658
Bme1390I	CCNGG	2 cut(s)	27, 339
Bme18I	GGWCC	2 cut(s)	342, 699
BmgT120I	GGNCC	2 cut(s)	342, 699
BmiI	GGNNCC	3 cut(s)	142, 219, 343
BmrFI	CCNGG	2 cut(s)	27, 339
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	3 cut(s)	35, 76, 395
BmuI	ACTGGG	1 cut(s)	326
BoxI	GACNNNNGTC	1 cut(s)	555
BpmI	CTGGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	27
Bsa29I	ATCGAT	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	3 cut(s)	338, 573, 640
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse1I	ACTGG	2 cut(s)	321, 345
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	339
BseCI	ATCGAT	1 cut(s)	274
BseDI	CCNNGG	3 cut(s)	338, 573, 640
BseGI	GGATG	3 cut(s)	50, 161, 612
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMII	CTCAG	1 cut(s)	548
BseNI	ACTGG	2 cut(s)	321, 345
BseXI	GCAGC	2 cut(s)	416, 668
BshFI	GGCC	1 cut(s)	653
BshNI	GGYRCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	26, 616
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	1 cut(s)	543
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	1 cut(s)	653
Bsp143I	GATC	2 cut(s)	55, 529
Bsp19I	CCATGG	1 cut(s)	573
BspACI	CCGC	2 cut(s)	434, 654
BspANI	GGCC	1 cut(s)	653
BspCNI	CTCAG	1 cut(s)	547
BspDI	ATCGAT	1 cut(s)	274
BspLI	GGNNCC	3 cut(s)	142, 219, 343
BspPI	GGATC	2 cut(s)	63, 524
BspT107I	GGYRCC	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	321, 345
BssECI	CCNNGG	3 cut(s)	338, 573, 640
BssMI	GATC	2 cut(s)	55, 529
BssT1I	CCWWGG	2 cut(s)	573, 640
Bst2UI	CCWGG	1 cut(s)	339
Bst6I	CTCTTC	1 cut(s)	573
BstAPI	GCANNNNNTGC	1 cut(s)	625
BstC8I	GCNNGC	2 cut(s)	73, 77
BstDEI	CTNAG	2 cut(s)	495, 534
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	3 cut(s)	50, 161, 612
BstKTI	GATC	2 cut(s)	58, 532
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	2 cut(s)	55, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 625
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	259
BstPAI	GACNNNNGTC	1 cut(s)	555
BstSCI	CCNGG	2 cut(s)	25, 337
BstV1I	GCAGC	2 cut(s)	416, 668
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
Bsu15I	ATCGAT	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	653
BsuTUI	ATCGAT	1 cut(s)	274
BtgI	CCRYGG	1 cut(s)	573
BtsCI	GGATG	3 cut(s)	50, 161, 612
Cac8I	GCNNGC	2 cut(s)	73, 77
CaiI	CAGNNNCTG	2 cut(s)	389, 410
Cfr13I	GGNCC	2 cut(s)	342, 699
ClaI	ATCGAT	1 cut(s)	274
CviAII	CATG	6 cut(s)	49, 109, 256, 401, 574, 586
DdeI	CTNAG	2 cut(s)	495, 534
DpnI	GATC	2 cut(s)	57, 531
DpnII	GATC	2 cut(s)	55, 529
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Eco130I	CCWWGG	2 cut(s)	573, 640
Eco47I	GGWCC	2 cut(s)	342, 699
Eco57I	CTGAAG	2 cut(s)	473, 499
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	573, 640
EcoT22I	ATGCAT	2 cut(s)	50, 91
ErhI	CCWWGG	2 cut(s)	573, 640
FaeI	CATG	6 cut(s)	52, 112, 259, 404, 577, 589
FatI	CATG	6 cut(s)	48, 108, 255, 400, 573, 585
Fnu4HI	GCNGC	3 cut(s)	405, 654, 657
FokI	GGATG	3 cut(s)	57, 168, 599
Fsp4HI	GCNGC	3 cut(s)	405, 654, 657
FspBI	CTAG	3 cut(s)	503, 546, 712
GluI	GCNGC	3 cut(s)	405, 654, 657
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	653
HapII	CCGG	2 cut(s)	26, 616
Hin1II	CATG	6 cut(s)	52, 112, 259, 404, 577, 589
HincII	GTYRAC	2 cut(s)	253, 610
HindII	GTYRAC	2 cut(s)	253, 610
HindIII	AAGCTT	3 cut(s)	9, 455, 511
HpaI	GTTAAC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	26, 616
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	3 cut(s)	161, 253, 610
Hpy188I	TCNGA	3 cut(s)	391, 487, 537
Hpy188III	TCNNGA	2 cut(s)	176, 473
Hpy8I	GTNNAC	3 cut(s)	161, 253, 610
HpyAV	CCTTC	1 cut(s)	695
HpyCH4V	TGCA	4 cut(s)	48, 89, 290, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 625
HpyF3I	CTNAG	2 cut(s)	495, 534
Hsp92II	CATG	6 cut(s)	52, 112, 259, 404, 577, 589
KspAI	GTTAAC	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	55, 529
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	2 cut(s)	416, 668
LweI	GCATC	3 cut(s)	35, 76, 395
MaeI	CTAG	3 cut(s)	503, 546, 712
MalI	GATC	2 cut(s)	57, 531
MboI	GATC	2 cut(s)	55, 529
MboII	GAAGA	4 cut(s)	95, 461, 590, 680
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	5 cut(s)	303, 357, 417, 437, 675
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	2 cut(s)	543, 712
Mph1103I	ATGCAT	2 cut(s)	50, 91
MseI	TTAA	2 cut(s)	62, 252
MslI	CAYNNNNRTG	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	451
MspI	CCGG	2 cut(s)	26, 616
MspR9I	CCNGG	2 cut(s)	27, 339
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	72, 625
NciI	CCSGG	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	573
NdeII	GATC	2 cut(s)	55, 529
NlaIII	CATG	6 cut(s)	52, 112, 259, 404, 577, 589
NlaIV	GGNNCC	3 cut(s)	142, 219, 343
NsiI	ATGCAT	2 cut(s)	50, 91
NspI	RCATGY	1 cut(s)	259
PciI	ACATGT	1 cut(s)	255
PctI	GAATGC	1 cut(s)	529
PfoI	TCCNGGA	1 cut(s)	25
PkrI	GCNGC	3 cut(s)	406, 655, 658
PscI	ACATGT	1 cut(s)	255
PshAI	GACNNNNGTC	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	3 cut(s)	142, 219, 343
PspPI	GGNCC	2 cut(s)	342, 699
PstNI	CAGNNNCTG	2 cut(s)	389, 410
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	451
RseI	CAYNNNNRTG	1 cut(s)	572
SaqAI	TTAA	2 cut(s)	62, 252
SatI	GCNGC	3 cut(s)	405, 654, 657
Sau3AI	GATC	2 cut(s)	55, 529
Sau96I	GGNCC	2 cut(s)	342, 699
ScrFI	CCNGG	2 cut(s)	27, 339
SfaNI	GCATC	3 cut(s)	35, 76, 395
SinI	GGWCC	2 cut(s)	342, 699
SmiMI	CAYNNNNRTG	1 cut(s)	572
Sse9I	AATT	5 cut(s)	303, 357, 417, 437, 675
SsiI	CCGC	2 cut(s)	434, 654
SspMI	CTAG	3 cut(s)	503, 546, 712
StyD4I	CCNGG	2 cut(s)	25, 337
StyI	CCWWGG	2 cut(s)	573, 640
TaqI	TCGA	1 cut(s)	274
TasI	AATT	5 cut(s)	303, 357, 417, 437, 675
TauI	GCSGC	1 cut(s)	656
Tru1I	TTAA	2 cut(s)	62, 252
Tru9I	TTAA	2 cut(s)	62, 252
TseI	GCWGC	2 cut(s)	404, 656
TspDTI	ATGAA	6 cut(s)	125, 155, 216, 323, 656, 680
VpaK11BI	GGWCC	2 cut(s)	342, 699
XapI	RAATTY	1 cut(s)	417
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	3 cut(s)	503, 546, 712
Zsp2I	ATGCAT	2 cut(s)	50, 91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.