Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007075

Physical Location & Seq

Genomic Coordinates Reverse (-)

54489062 .. 54490828

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG315000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1767 bp

ATGATTTTGAATCGCGTGAGATATTATTCAACCAACTGTTTCCCAACCCCAAAACCTCATCATCTTCAACCACCCAAAACCCTCTCGGTCTCGGAGAACCCACCTTCCATAGTTGATAGGATCAAGCAATGTCGTACTCAAACAGAGCTAGAACAGATATGTGCTTCAATGATGAAGACCAATACAATCCAAGACTCCTTCTTTACCAACCAACTCATCACCGCCTGTTCCTCTCTTTCCCGCCTAGACCACGCAGCTTTAGCCTTTTCCCACATCCAAAACCCAAACGTCTTCGTCTACAACGCAATGATCAAAGCCTTTGTTCACTGCGGACACCCGTTTCAGGGTTTAGGCTGTTACGTGAATATGTTGCGGAACGGGGTCTTCCCTACCAGCTATACGTTTCCGTCTTTGATCAAGGCTTGTGCCTCGGTTTCTGTGATGGGTTTTGGAGAAGCTGTACATGGCTGTGTTTGGAAAAGTGGGTTTGATTCACATGTGTTTGTGCAGACTGCTTTGATTGATTTGTATTCGAAGCTGGGACGAATTGGTGAAGCGCAGAAGGTGTTCGATGAAATGCCTGAGAGAGATGGTTTTGCTTGGACTACAATGGTTTCTTCTCATGCTCGTGTAGGGGATATGAGGTCGGCGAGGACATTGTTTGATGTGATGATGGAAAGGTGTATAGCTAATTCGGCTACTTGGAATACTATGATCGACGGCTATGCGAGACTTGGTGATGTGGAGTCTGCAGAGTTGTTGTTTAATCAAATGCCAACCAGGGATTTGATCTCGTGGACAGCTATGATCAATTGTTATTCTCAGAACAGGAAATTTGGAGAAGCATTAGCAGTGTTTAATGATATGAGGTTGAATGGGGTCAGTCCTGATGCGGTCACCATGTCGACTGTTATTTCGGCTTGTGCTCATCTCGGAGCTCTAGACTTGGGGAAAGGGATTCACTTTTATGTAACGCAGAATGGGTTTGATCTTGATGTTTATATTGGGTCTGCGTTGATTGATATGTATGCGAAATGTGGCACATTGGACAGGGCTCTTGTTGTTTTCTTTAACTTGACGGATAAGAACTTGTTCTGTTGGAATTCAGTGATTGAAGGGCTTGCAGCTCATGGATATGCCAAAAAAGCACTAGCAATGTTTAGCAAGATGGAGAGAGAGAAGATCAAGCCAAATGGGATTACTTTTATAAGTGTTTTAAGTGCCTGCACTCATGCCGGGCTTGTTGAAGAAGGCCGTAGGAGATTTTTAAGCATGACCCAAGATTATTCCATCTCTCCTGGAGTTGAACACTATGGATGCATGGTGGATCTATTAAGCAGAGCTGGCTTGCTCGAAGATGCGTTAGAGTTGATAAGAAGCATGAAACTAAAACCAAACTTTGTTATCTGGGGTGCCTTGTTGGGTGGATGTAGACTTCATAGAAATCTGGAGATTGCTAAAGTTTCAGTCAATGAATTGATGGTACTGGAGCCAGAAAATAGTGGGCATTACAACCTTATAGTTAACATGTATGCCGAAGTCAATCGATGGGGAGAAGTTGCAGACGTACGAGCAATTATGAAGCAACTGGGAGTAGAAAAAACATCTCCTGGGTCCAGTTGGATTGAAATTGAAAGAAAAATCCATACGTTTTCAGCATCTGACAAATCTCATGCAGCTTCTGGTGAAATTTACTTGTTTCTTGCGGAATTATATGGGCAGCTGAAGCTTGATGTTTATCTTCTTGAACTTGGCTCTGACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0019538 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 bHLH-MYC_N

Protein Analysis

588

Amino Acids

65.52

Weight (kDa)

6.53

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	95 - 143	2.7e-10	PPR repeat family
PPR_1	PF12854	228 - 258	3e-07	PPR repeat
PPR_2	PF13041	231 - 261	7e-07	PPR repeat family
PPR	PF01535	234 - 261	2.9e-08	PPR repeat
PPR_2	PF13041	262 - 310	8.5e-14	PPR repeat family
PPR	PF01535	264 - 294	8.3e-08	PPR repeat
PPR_2	PF13041	363 - 410	6.8e-10	PPR repeat family
E_motif	PF20431	480 - 543	8.1e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06143
fragaria_vesca	FvH4_2g21860
malus_domestica	MD05G1200200.v1.1 MD10G1186800.v1.1
prunus_persica	Prupe.8G226200_v2.0.a1
pyrus_communis	pycom05g18700
rosa_chinensis	RchiOBHm_Chr6g0288721 RchiOBHm_Chr6g0288731
rosa_laevigata	RLG00000012369 RLG00000012373 RLG00000012374 RLG00000012381
rosa_multiflora	Rmu_sc0004861.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179910
rosa_rugosa	Rorug06G0197800 Rorug06G0197900 Rorug06G0198000
rosa_samantha	Rh6BG314900 Rh6BG315000 Rh6CG322200 Rh6CG322300 Rh6DG308000 Rh6DG308100
rosa_wichuraiana	Rw6G026720 Rw6G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1208
AccB1I	GGYRCC	1 cut(s)	1412
AccI	GTMKAC	3 cut(s)	297, 905, 1432
AccII	CGCG	1 cut(s)	15
AciI	CCGC	6 cut(s)	222, 241, 330, 373, 893, 1706
AclWI	GGATC	2 cut(s)	128, 1335
AcsI	RAATTY	3 cut(s)	833, 1102, 1689
AcuI	CTGAAG	1 cut(s)	1745
AfaI	GTAC	4 cut(s)	136, 462, 1485, 1569
AfiI	CCNNNNNNNGG	2 cut(s)	343, 344
AflIII	ACRYGT	2 cut(s)	496, 1527
AjnI	CCWGG	3 cut(s)	779, 1297, 1609
AloI	GAACNNNNNNTCC	2 cut(s)	89, 121
Alw21I	GWGCWC	2 cut(s)	928, 940
Alw26I	GTCTC	2 cut(s)	94, 724
AlwI	GGATC	2 cut(s)	128, 1335
AlwNI	CAGNNNCTG	2 cut(s)	1661, 1682
AoxI	GGCC	1 cut(s)	1252
ApeKI	GCWGC	4 cut(s)	254, 1124, 1676, 1720
ApoI	RAATTY	3 cut(s)	833, 1102, 1689
ArsI	GACNNNNNNTTYG	2 cut(s)	898, 930
Asp700I	GAANNNNTTC	2 cut(s)	566, 1091
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	1 cut(s)	1614
AsuC2I	CCSGG	1 cut(s)	1237
AsuHPI	GGTGA	5 cut(s)	211, 563, 749, 889, 1697
AsuII	TTCGAA	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	1614
BanI	GGYRCC	1 cut(s)	1412
BanII	GRGCYC	2 cut(s)	940, 1057
BauI	CACGAG	2 cut(s)	627, 793
BbsI	GAAGAC	3 cut(s)	182, 283, 376
Bbv12I	GWGCWC	2 cut(s)	928, 940
BbvI	GCAGC	4 cut(s)	266, 1136, 1688, 1732
BccI	CCATC	7 cut(s)	436, 584, 667, 1162, 1298, 1474, 1542
BceAI	ACGGC	2 cut(s)	736, 1239
BcgI	CGANNNNNNTGC	2 cut(s)	707, 741
BciT130I	CCWGG	3 cut(s)	781, 1299, 1611
BclI	TGATCA	3 cut(s)	309, 414, 807
BcnI	CCSGG	1 cut(s)	1237
BcoDI	GTCTC	2 cut(s)	94, 724
BfaI	CTAG	4 cut(s)	149, 245, 941, 1151
BfmI	CTRYAG	1 cut(s)	750
BisI	GCNGC	4 cut(s)	255, 1125, 1677, 1721
BlsI	GCNGC	4 cut(s)	256, 1126, 1678, 1722
Bme1390I	CCNGG	4 cut(s)	781, 1237, 1299, 1611
Bme18I	GGWCC	1 cut(s)	1614
BmgT120I	GGNCC	1 cut(s)	1614
BmiI	GGNNCC	3 cut(s)	1414, 1491, 1615
BmrFI	CCNGG	4 cut(s)	781, 1237, 1299, 1611
BmrI	ACTGGG	1 cut(s)	1598
BmsI	GCATC	4 cut(s)	880, 1307, 1348, 1667
BmuI	ACTGGG	1 cut(s)	1598
BpiI	GAAGAC	3 cut(s)	182, 283, 376
BpmI	CTGGAG	3 cut(s)	1320, 1469, 1508
Bpu14I	TTCGAA	1 cut(s)	533
BpuMI	CCSGG	1 cut(s)	1237
Bsa29I	ATCGAT	1 cut(s)	1546
BsaAI	YACGTR	1 cut(s)	361
BsaBI	GATNNNNATC	1 cut(s)	1737
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	3 cut(s)	429, 780, 1610
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 344
Bse1I	ACTGG	3 cut(s)	1491, 1593, 1617
Bse3DI	GCAATG	3 cut(s)	134, 312, 1161
Bse8I	GATNNNNATC	1 cut(s)	1737
BseBI	CCWGG	3 cut(s)	781, 1299, 1611
BseCI	ATCGAT	1 cut(s)	1546
BseDI	CCNNGG	3 cut(s)	429, 780, 1610
BseGI	GGATG	3 cut(s)	273, 1322, 1433
BseJI	GATNNNNATC	1 cut(s)	1737
BseLI	CCNNNNNNNGG	2 cut(s)	343, 344
BseMI	GCAATG	3 cut(s)	134, 312, 1161
BseMII	CTCAG	2 cut(s)	573, 836
BseNI	ACTGG	3 cut(s)	1491, 1593, 1617
BseXI	GCAGC	4 cut(s)	266, 1136, 1688, 1732
BseYI	CCCAGC	1 cut(s)	538
BsgI	GTGCAG	2 cut(s)	527, 1210
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	1254
BshNI	GGYRCC	1 cut(s)	1412
BshVI	ATCGAT	1 cut(s)	1546
BsiHKAI	GWGCWC	2 cut(s)	928, 940
BsiSI	CCGG	1 cut(s)	1236
BsiWI	CGTACG	1 cut(s)	1567
BslFI	GGGAC	1 cut(s)	555
BslI	CCNNNNNNNGG	2 cut(s)	343, 344
BsmAI	GTCTC	2 cut(s)	94, 724
BsmFI	GGGAC	1 cut(s)	555
BsnI	GGCC	1 cut(s)	1254
Bso31I	GGTCTC	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	533
Bsp1286I	GDGCHC	3 cut(s)	928, 940, 1057
Bsp1407I	TGTACA	1 cut(s)	460
Bsp143I	GATC	9 cut(s)	120, 309, 414, 714, 789, 807, 988, 1182, 1327
BspACI	CCGC	6 cut(s)	222, 241, 330, 373, 893, 1706
BspANI	GGCC	1 cut(s)	1254
BspCNI	CTCAG	2 cut(s)	574, 835
BspDI	ATCGAT	1 cut(s)	1546
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	3 cut(s)	1414, 1491, 1615
BspMAI	CTGCAG	1 cut(s)	754
BspPI	GGATC	2 cut(s)	128, 1335
BspT104I	TTCGAA	1 cut(s)	533
BspT107I	GGYRCC	1 cut(s)	1412
BspTNI	GGTCTC	1 cut(s)	94
BsrDI	GCAATG	3 cut(s)	134, 312, 1161
BsrGI	TGTACA	1 cut(s)	460
BsrI	ACTGG	3 cut(s)	1491, 1593, 1617
BssECI	CCNNGG	3 cut(s)	429, 780, 1610
BssMI	GATC	9 cut(s)	120, 309, 414, 714, 789, 807, 988, 1182, 1327
BssSI	CACGAG	2 cut(s)	627, 793
Bst2BI	CACGAG	2 cut(s)	627, 793
Bst2UI	CCWGG	3 cut(s)	781, 1299, 1611
Bst4CI	ACNGT	2 cut(s)	38, 910
BstAUI	TGTACA	1 cut(s)	460
BstBAI	YACGTR	1 cut(s)	361
BstBI	TTCGAA	1 cut(s)	533
BstC8I	GCNNGC	4 cut(s)	1122, 1225, 1345, 1349
BstDEI	CTNAG	2 cut(s)	582, 822
BstEII	GGTNACC	1 cut(s)	895
BstF5I	GGATG	3 cut(s)	273, 1322, 1433
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	9 cut(s)	123, 312, 417, 717, 792, 810, 991, 1185, 1330
BstMAI	GTCTC	2 cut(s)	94, 724
BstMBI	GATC	9 cut(s)	120, 309, 414, 714, 789, 807, 988, 1182, 1327
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 695, 1145, 1344, 1726
BstNI	CCWGG	3 cut(s)	781, 1299, 1611
BstNSI	RCATGY	2 cut(s)	500, 1531
BstPI	GGTNACC	1 cut(s)	895
BstSCI	CCNGG	4 cut(s)	779, 1235, 1297, 1609
BstSFI	CTRYAG	1 cut(s)	750
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	4 cut(s)	266, 1136, 1688, 1732
BstV2I	GAAGAC	3 cut(s)	182, 283, 376
BstX2I	RGATCY	1 cut(s)	1327
BstYI	RGATCY	1 cut(s)	1327
Bsu15I	ATCGAT	1 cut(s)	1546
BsuRI	GGCC	1 cut(s)	1254
BsuTUI	ATCGAT	1 cut(s)	1546
BtsCI	GGATG	3 cut(s)	273, 1322, 1433
BtsI	GCAGTG	2 cut(s)	325, 858
BtsIMutI	CAGTG	3 cut(s)	325, 858, 1113
Cac8I	GCNNGC	4 cut(s)	1122, 1225, 1345, 1349
CaiI	CAGNNNCTG	2 cut(s)	1661, 1682
CfoI	GCGC	1 cut(s)	559
Cfr13I	GGNCC	1 cut(s)	1614
ClaI	ATCGAT	1 cut(s)	1546
Csp6I	GTAC	4 cut(s)	135, 461, 1484, 1568
CviQI	GTAC	4 cut(s)	135, 461, 1484, 1568
DdeI	CTNAG	2 cut(s)	582, 822
DpnI	GATC	9 cut(s)	122, 311, 416, 716, 791, 809, 990, 1184, 1329
DpnII	GATC	9 cut(s)	120, 309, 414, 714, 789, 807, 988, 1182, 1327
Ecl136II	GAGCTC	1 cut(s)	938
Eco24I	GRGCYC	2 cut(s)	940, 1057
Eco31I	GGTCTC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	1614
Eco53kI	GAGCTC	1 cut(s)	938
Eco57I	CTGAAG	1 cut(s)	1745
Eco91I	GGTNACC	1 cut(s)	895
EcoICRI	GAGCTC	1 cut(s)	938
EcoO65I	GGTNACC	1 cut(s)	895
EcoRI	GAATTC	1 cut(s)	1102
EcoRII	CCWGG	3 cut(s)	779, 1297, 1609
EcoT22I	ATGCAT	1 cut(s)	1322
EcoT38I	GRGCYC	2 cut(s)	940, 1057
FaqI	GGGAC	1 cut(s)	555
FauI	CCCGC	1 cut(s)	248
FbaI	TGATCA	3 cut(s)	309, 414, 807
FblI	GTMKAC	3 cut(s)	297, 905, 1432
Fnu4HI	GCNGC	4 cut(s)	255, 1125, 1677, 1721
FokI	GGATG	3 cut(s)	260, 1329, 1440
FriOI	GRGCYC	2 cut(s)	940, 1057
Fsp4HI	GCNGC	4 cut(s)	255, 1125, 1677, 1721
FspBI	CTAG	4 cut(s)	149, 245, 941, 1151
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	4 cut(s)	255, 1125, 1677, 1721
GsaI	CCCAGC	1 cut(s)	542
GsuI	CTGGAG	3 cut(s)	1320, 1469, 1508
HaeIII	GGCC	1 cut(s)	1254
HapII	CCGG	1 cut(s)	1236
HhaI	GCGC	1 cut(s)	559
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HincII	GTYRAC	2 cut(s)	906, 1525
HindII	GTYRAC	2 cut(s)	906, 1525
HindIII	AAGCTT	1 cut(s)	1727
HinfI	GANTC	5 cut(s)	10, 194, 491, 746, 958
HpaI	GTTAAC	1 cut(s)	1525
HpaII	CCGG	1 cut(s)	1236
HphI	GGTGA	5 cut(s)	211, 563, 749, 889, 1697
Hpy166II	GTNNAC	6 cut(s)	298, 325, 798, 906, 1433, 1525
Hpy188I	TCNGA	5 cut(s)	94, 825, 935, 1663, 1759
Hpy188III	TCNNGA	5 cut(s)	887, 941, 992, 1448, 1745
Hpy8I	GTNNAC	6 cut(s)	298, 325, 798, 906, 1433, 1525
Hpy99I	CGWCG	1 cut(s)	722
HpyAV	CCTTC	5 cut(s)	114, 208, 556, 1109, 1244
HpyCH4III	ACNGT	2 cut(s)	38, 910
HpyCH4IV	ACGT	5 cut(s)	288, 360, 401, 1566, 1649
HpyCH4V	TGCA	7 cut(s)	508, 752, 1124, 1227, 1320, 1562, 1676
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 695, 1145, 1344, 1726
HpyF3I	CTNAG	2 cut(s)	582, 822
HpySE526I	ACGT	5 cut(s)	288, 360, 401, 1566, 1649
HspAI	GCGC	1 cut(s)	557
Ksp22I	TGATCA	3 cut(s)	309, 414, 807
KspAI	GTTAAC	1 cut(s)	1525
Kzo9I	GATC	9 cut(s)	120, 309, 414, 714, 789, 807, 988, 1182, 1327
LmnI	GCTCC	2 cut(s)	935, 1489
Lsp1109I	GCAGC	4 cut(s)	266, 1136, 1688, 1732
LweI	GCATC	4 cut(s)	880, 1307, 1348, 1667
MaeI	CTAG	4 cut(s)	149, 245, 941, 1151
MaeII	ACGT	5 cut(s)	288, 360, 401, 1566, 1649
MaeIII	GTNAC	3 cut(s)	356, 895, 970
MalI	GATC	9 cut(s)	122, 311, 416, 716, 791, 809, 990, 1184, 1329
MboI	GATC	9 cut(s)	120, 309, 414, 714, 789, 807, 988, 1182, 1327
MboII	GAAGA	9 cut(s)	56, 187, 283, 376, 609, 1192, 1259, 1367, 1733
MfeI	CAATTG	1 cut(s)	811
MflI	RGATCY	1 cut(s)	1327
MhlI	GDGCHC	3 cut(s)	928, 940, 1057
MlyI	GAGTC	2 cut(s)	188, 755
MmeI	TCCRAC	2 cut(s)	1079, 1601
MnlI	CCTC	7 cut(s)	66, 92, 241, 439, 636, 645, 861
Mph1103I	ATGCAT	1 cut(s)	1322
MroXI	GAANNNNTTC	2 cut(s)	566, 1091
MseI	TTAA	7 cut(s)	765, 858, 1071, 1217, 1268, 1334, 1524
MslI	CAYNNNNRTG	4 cut(s)	468, 627, 966, 1134
MspA1I	CMGCKG	1 cut(s)	1723
MspI	CCGG	1 cut(s)	1236
MspR9I	CCNGG	4 cut(s)	781, 1237, 1299, 1611
MunI	CAATTG	1 cut(s)	811
MvaI	CCWGG	3 cut(s)	781, 1299, 1611
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	5 cut(s)	260, 695, 1145, 1344, 1726
NciI	CCSGG	1 cut(s)	1237
NdeII	GATC	9 cut(s)	120, 309, 414, 714, 789, 807, 988, 1182, 1327
NlaIV	GGNNCC	3 cut(s)	1414, 1491, 1615
NmuCI	GTSAC	1 cut(s)	895
NsiI	ATGCAT	1 cut(s)	1322
NspI	RCATGY	2 cut(s)	500, 1531
NspV	TTCGAA	1 cut(s)	533
PciI	ACATGT	2 cut(s)	496, 1527
PdmI	GAANNNNTTC	2 cut(s)	566, 1091
PfeI	GAWTC	3 cut(s)	10, 491, 958
Pfl23II	CGTACG	1 cut(s)	1567
PfoI	TCCNGGA	1 cut(s)	1297
PkrI	GCNGC	4 cut(s)	256, 1126, 1678, 1722
PleI	GAGTC	2 cut(s)	188, 754
PpsI	GAGTC	2 cut(s)	188, 754
Ppu21I	YACGTR	1 cut(s)	361
PscI	ACATGT	2 cut(s)	496, 1527
PsiI	TTATAA	1 cut(s)	1208
Psp124BI	GAGCTC	1 cut(s)	940
Psp6I	CCWGG	3 cut(s)	779, 1297, 1609
PspEI	GGTNACC	1 cut(s)	895
PspFI	CCCAGC	1 cut(s)	538
PspGI	CCWGG	3 cut(s)	779, 1297, 1609
PspLI	CGTACG	1 cut(s)	1567
PspN4I	GGNNCC	3 cut(s)	1414, 1491, 1615
PspPI	GGNCC	1 cut(s)	1614
PstI	CTGCAG	1 cut(s)	754
PstNI	CAGNNNCTG	2 cut(s)	1661, 1682
PsuI	RGATCY	1 cut(s)	1327
PvuII	CAGCTG	1 cut(s)	1723
RsaI	GTAC	4 cut(s)	136, 462, 1485, 1569
RsaNI	GTAC	4 cut(s)	135, 461, 1484, 1568
RseI	CAYNNNNRTG	4 cut(s)	468, 627, 966, 1134
SacI	GAGCTC	1 cut(s)	940
SalI	GTCGAC	1 cut(s)	904
SaqAI	TTAA	7 cut(s)	765, 858, 1071, 1217, 1268, 1334, 1524
SatI	GCNGC	4 cut(s)	255, 1125, 1677, 1721
Sau3AI	GATC	9 cut(s)	120, 309, 414, 714, 789, 807, 988, 1182, 1327
Sau96I	GGNCC	1 cut(s)	1614
SchI	GAGTC	2 cut(s)	188, 755
ScrFI	CCNGG	4 cut(s)	781, 1237, 1299, 1611
SduI	GDGCHC	3 cut(s)	928, 940, 1057
SfaNI	GCATC	4 cut(s)	880, 1307, 1348, 1667
SfcI	CTRYAG	1 cut(s)	750
SfuI	TTCGAA	1 cut(s)	533
SinI	GGWCC	1 cut(s)	1614
SmiMI	CAYNNNNRTG	4 cut(s)	468, 627, 966, 1134
SsiI	CCGC	6 cut(s)	222, 241, 330, 373, 893, 1706
SspMI	CTAG	4 cut(s)	149, 245, 941, 1151
SstI	GAGCTC	1 cut(s)	940
StyD4I	CCNGG	4 cut(s)	779, 1235, 1297, 1609
TaaI	ACNGT	2 cut(s)	38, 910
TaiI	ACGT	5 cut(s)	291, 363, 404, 1569, 1652
TaqI	TCGA	6 cut(s)	533, 570, 717, 905, 1353, 1546
TaqII	GACCGA	1 cut(s)	76
TatI	WGTACW	1 cut(s)	460
TfiI	GAWTC	3 cut(s)	10, 491, 958
Tru1I	TTAA	7 cut(s)	765, 858, 1071, 1217, 1268, 1334, 1524
Tru9I	TTAA	7 cut(s)	765, 858, 1071, 1217, 1268, 1334, 1524
TscAI	CASTG	3 cut(s)	332, 858, 1113
TseFI	GTSAC	1 cut(s)	895
TseI	GCWGC	4 cut(s)	254, 1124, 1676, 1720
Tsp45I	GTSAC	1 cut(s)	895
TspDTI	ATGAA	6 cut(s)	188, 588, 1397, 1427, 1488, 1595
TspGWI	ACGGA	2 cut(s)	396, 1094
TspRI	CASTG	3 cut(s)	332, 858, 1113
VpaK11BI	GGWCC	1 cut(s)	1614
XapI	RAATTY	3 cut(s)	833, 1102, 1689
XbaI	TCTAGA	1 cut(s)	940
XceI	RCATGY	2 cut(s)	500, 1531
XmiI	GTMKAC	3 cut(s)	297, 905, 1432
XmnI	GAANNNNTTC	2 cut(s)	566, 1091
XspI	CTAG	4 cut(s)	149, 245, 941, 1151
Zsp2I	ATGCAT	1 cut(s)	1322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.