Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007075

Physical Location & Seq

Genomic Coordinates Reverse (-)

28097412 .. 28098083

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1186800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAAGTGCTCGGAGTTCACGGATATGCAAATGAAGCAACAGCAATGGTCTGCAAGATGGAGAGAGAGAAGATCAAGCCAAATGGGGTTACTTTTGAAAGTGTTTTAAGTGCCTGCACTCATGCAGGATTTGTAGAAGAAGGCCGCAAGAGATTTTCAAGCACGATCCTGGACTATTCCATCCGCCCCAAAGTTGAGCAATATGGATGCATGGTGGATCTGTTGAGCAAAGCCGGCCTGCTTGAAAATGCTCTAGGGTTGATAAGAAGCATGGAGTTTGAACCGAACTCTGGTATATGGGGTGCATTGTTAGGTGGCTGCGAGCTTCGTAAAAACTTGAAGATTGCTCAAGTTTGTGTCAAGGAATTGATGTTGTTGGAGCCAAATAATTGTGGGTGTTTCAACCTTTTGGTGAACATGTGTGTGGATGCAAAACGATGGGGAGAAGTTGCGGATATTCGAGCAACCATGAAGGAACTTGGAGTTGAAAAGGGATGTCCTGTGTCCAGTTGGATTGAAATGGAGAGGAAAGTTCATCAGCTTGCAGCGTCTGATGAATCTCATTCAGCTTCTGATGTAATTTACTTATTGCTGGTGGAATTATATGTGCAGCTGAAACTTGACGTTTATGTTCCTGAACTTGACTCTGAGTTATGGTGGTGCAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0019538 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 bHLH-MYC_N

Protein Analysis

224

Amino Acids

24.93

Weight (kDa)

5.14

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	112 - 173	4e-09	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06143
fragaria_vesca	FvH4_2g21860
malus_domestica	MD05G1200200.v1.1 MD10G1186800.v1.1
prunus_persica	Prupe.8G226200_v2.0.a1
pyrus_communis	pycom05g18700
rosa_chinensis	RchiOBHm_Chr6g0288721 RchiOBHm_Chr6g0288731
rosa_laevigata	RLG00000012369 RLG00000012373 RLG00000012374 RLG00000012381
rosa_multiflora	Rmu_sc0004861.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179910
rosa_rugosa	Rorug06G0197800 Rorug06G0197900 Rorug06G0198000
rosa_samantha	Rh6BG314900 Rh6BG315000 Rh6CG322200 Rh6CG322300 Rh6DG308000 Rh6DG308100
rosa_wichuraiana	Rw6G026720 Rw6G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	145, 184, 452
AclWI	GGATC	2 cut(s)	160, 225
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	8 cut(s)	98, 159, 245, 281, 340, 403, 488, 518
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	4 cut(s)	325, 541, 569, 613
AluI	AGCT	4 cut(s)	325, 541, 569, 613
Alw21I	GWGCWC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	160, 225
AlwNI	CAGNNNCTG	2 cut(s)	551, 572
AoxI	GGCC	2 cut(s)	142, 235
ApeKI	GCWGC	3 cut(s)	318, 545, 610
AsuHPI	GGTGA	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	3 cut(s)	305, 557, 622
BccI	CCATC	3 cut(s)	52, 188, 432
BciT130I	CCWGG	1 cut(s)	170
BfaI	CTAG	1 cut(s)	254
BisI	GCNGC	4 cut(s)	145, 319, 546, 611
BlsI	GCNGC	4 cut(s)	146, 320, 547, 612
Bme1390I	CCNGG	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	197, 418
BpuEI	CTTGAG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	170
BseGI	GGATG	4 cut(s)	180, 212, 433, 500
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	1 cut(s)	507
BseXI	GCAGC	3 cut(s)	305, 557, 622
BsgI	GTGCAG	2 cut(s)	100, 629
BshFI	GGCC	2 cut(s)	144, 237
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	290
BsnI	GGCC	2 cut(s)	144, 237
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	72, 165, 217
BspACI	CCGC	3 cut(s)	145, 184, 452
BspANI	GGCC	2 cut(s)	144, 237
BspCNI	CTCAG	1 cut(s)	640
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	160, 225
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	233
BssMI	GATC	3 cut(s)	72, 165, 217
Bst2UI	CCWGG	1 cut(s)	170
BstC8I	GCNNGC	5 cut(s)	115, 235, 239, 323, 543
BstDEI	CTNAG	1 cut(s)	648
BstF5I	GGATG	4 cut(s)	180, 212, 433, 500
BstKTI	GATC	3 cut(s)	75, 168, 220
BstMBI	GATC	3 cut(s)	72, 165, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 234
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	305, 557, 622
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	144, 237
BtsCI	GGATG	4 cut(s)	180, 212, 433, 500
Cac8I	GCNNGC	5 cut(s)	115, 235, 239, 323, 543
CaiI	CAGNNNCTG	2 cut(s)	551, 572
Cfr10I	RCCGGY	1 cut(s)	233
CseI	GACGC	1 cut(s)	537
CviAII	CATG	5 cut(s)	122, 211, 271, 418, 469
DdeI	CTNAG	1 cut(s)	648
DpnI	GATC	3 cut(s)	74, 167, 219
DpnII	GATC	3 cut(s)	72, 165, 217
EciI	GGCGGA	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	212
FaeI	CATG	5 cut(s)	125, 214, 274, 421, 472
FatI	CATG	5 cut(s)	121, 210, 270, 417, 468
Fnu4HI	GCNGC	4 cut(s)	145, 319, 546, 611
FokI	GGATG	4 cut(s)	167, 219, 440, 507
Fsp4HI	GCNGC	4 cut(s)	145, 319, 546, 611
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	4 cut(s)	145, 319, 546, 611
HaeIII	GGCC	2 cut(s)	144, 237
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	1 cut(s)	537
Hin1II	CATG	5 cut(s)	125, 214, 274, 421, 472
HinfI	GANTC	2 cut(s)	557, 644
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	2 cut(s)	19, 415
Hpy188I	TCNGA	4 cut(s)	14, 553, 574, 649
Hpy188III	TCNNGA	1 cut(s)	635
Hpy8I	GTNNAC	2 cut(s)	19, 415
HpyAV	CCTTC	2 cut(s)	134, 466
HpyCH4IV	ACGT	1 cut(s)	624
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 234
HpyF3I	CTNAG	1 cut(s)	648
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	5 cut(s)	125, 214, 274, 421, 472
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	72, 165, 217
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	3 cut(s)	305, 557, 622
LweI	GCATC	2 cut(s)	197, 418
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	3 cut(s)	74, 167, 219
MboI	GATC	3 cut(s)	72, 165, 217
MboII	GAAGA	3 cut(s)	82, 149, 352
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	4 cut(s)	365, 388, 579, 599
MlyI	GAGTC	1 cut(s)	638
MmeI	TCCRAC	2 cut(s)	357, 491
MnlI	CCTC	1 cut(s)	519
Mph1103I	ATGCAT	1 cut(s)	212
MroNI	GCCGGC	1 cut(s)	233
MseI	TTAA	2 cut(s)	107, 670
MslI	CAYNNNNRTG	2 cut(s)	24, 422
MspA1I	CMGCKG	1 cut(s)	613
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	35, 234
NaeI	GCCGGC	1 cut(s)	235
NdeII	GATC	3 cut(s)	72, 165, 217
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	5 cut(s)	125, 214, 274, 421, 472
NlaIV	GGNNCC	1 cut(s)	381
NsiI	ATGCAT	1 cut(s)	212
NspI	RCATGY	1 cut(s)	421
PciI	ACATGT	1 cut(s)	417
PdiI	GCCGGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	557
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	4 cut(s)	146, 320, 547, 612
PleI	GAGTC	1 cut(s)	638
PpsI	GAGTC	1 cut(s)	638
PscI	ACATGT	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	381
PstNI	CAGNNNCTG	2 cut(s)	551, 572
PsuI	RGATCY	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	613
RseI	CAYNNNNRTG	2 cut(s)	24, 422
SaqAI	TTAA	2 cut(s)	107, 670
SatI	GCNGC	4 cut(s)	145, 319, 546, 611
Sau3AI	GATC	3 cut(s)	72, 165, 217
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	7 cut(s)	316, 327, 408, 543, 571, 615, 627
SfaNI	GCATC	2 cut(s)	197, 418
SmiMI	CAYNNNNRTG	2 cut(s)	24, 422
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
Sse9I	AATT	4 cut(s)	365, 388, 579, 599
SsiI	CCGC	3 cut(s)	145, 184, 452
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	168
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	1 cut(s)	460
TasI	AATT	4 cut(s)	365, 388, 579, 599
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	2 cut(s)	107, 670
Tru9I	TTAA	2 cut(s)	107, 670
TseI	GCWGC	3 cut(s)	318, 545, 610
TspDTI	ATGAA	4 cut(s)	48, 485, 524, 570
TspGWI	ACGGA	1 cut(s)	36
XceI	RCATGY	1 cut(s)	421
XspI	CTAG	1 cut(s)	254
Zsp2I	ATGCAT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.