Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007075

Physical Location & Seq

Genomic Coordinates Forward (+)

31882259 .. 31890603

Gene Structure 8345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0198000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGACAGAACCTTCCAAAGTCATTCACGTTCGGAATGTGGGGCATGAGATTTCTGAAAATGATTTGCTTCAGCTATTTCAGCCCTTTGGAGTCATAACTAAGCTTGTGATGCTTCGTGCAAAAAACCAGGCTCTTATTCAAATGCAGGATACTGCTGCTGCAGTAAGTGCATTGCAATTCTATGCAAATGTTCAACCTGCCGTGAGGGGAAGGAATGTTTATGTCCAGTTCTCATCACATCAAGAACTAACAACAATGTATCAAAATGCTCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTTACAGTCCACCACATGCTATATCCTATAACAGTGGAAGTGCTGCATCAAGTATTTTTTCCTCATGGATTTGTAGAGAAGATTGTCACGTTCCAGAAGTCAGCTGGTTTTCAGGCCCTCATTCAGTATCAATCTCGCCAAAGTGCCGTTGCAGCTAGAACTGCACTGCAGGGACGCAATATTTACGATGGTTGTTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAGTTGCAAGTGAACTACAATAATGAGCGTTCAAGGGATTTCACAAATCCAAATTTGCCTTCGGAACAGAAAGGAAAATCCCCGCAACCTGGATATGGTGATTCAGGAGGCATGTATGGCCTTCAAGCTACTGGAGCCAGGGCAGTTGGATTCCCACAGATGGCTAACACGGCTGCGATTGCTGCTGCCTTTGGTGGAGGTTTGCCTCCTGGTATAAGTGGGACAAATGACAGGTGTACAGTCCTTGTGTCAAACTTGAATCCCGATAGAATAGATGAAGATAAGCTTTTTAACCTGTTCTCCATTTATGGAAACATTGTGAGAATTAAGCTTCTTCGGAACAAACCAGATCATGCACTCGTCCAGATGGGTGATGGCTTCCAGGCTGAACTGGCAGTACACTTTTTAAAGGGTGCAATCCTGTTTGGGAAGCGATTGGAGGTTAACTTCTCAAAGCATCCAAATATAACTCAGGGTGCCGACACTCATGAATACATGAATTCAAATCTCAACCGCTTCAACCGTAATGCTGCAAAGAACTACCGCTATTGCTGCTCACCTACAAAGATGATCCACTTGTCCTCTCTTCCACAAGAAGTTGCTGAAGATGAGATTGTGACCCACCTAGAGGATATTGGTACCATTGTCAACACAAAGCTCTTTGAGATGAACGGGAAGAAGCAGGCCTTAGTTCTGTTTGAAACTGAGGAGCAGGCCACCGAAGCCCTTGTGTGCAAGCATGCTACCTCGCTTGGTGGGTCAATTATCCGGATCTCCTTTTCACAGTTACAGGCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0019538 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 bHLH-MYC_N

Protein Analysis

444

Amino Acids

49.27

Weight (kDa)

7.23

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_8	PF11835	96 - 175	2.2e-21	RRM-like domain
RRM_5	PF13893	240 - 342	1.1e-32	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	259 - 324	2e-06	RNA recognition motif
RRM_1	PF00076	372 - 434	5.3e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06143
fragaria_vesca	FvH4_2g21860
malus_domestica	MD05G1200200.v1.1 MD10G1186800.v1.1
prunus_persica	Prupe.8G226200_v2.0.a1
pyrus_communis	pycom05g18700
rosa_chinensis	RchiOBHm_Chr6g0288721 RchiOBHm_Chr6g0288731
rosa_laevigata	RLG00000012369 RLG00000012373 RLG00000012374 RLG00000012381
rosa_multiflora	Rmu_sc0004861.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179910
rosa_rugosa	Rorug06G0197800 Rorug06G0197900 Rorug06G0198000
rosa_samantha	Rh6BG314900 Rh6BG315000 Rh6CG322200 Rh6CG322300 Rh6DG308000 Rh6DG308100
rosa_wichuraiana	Rw6G026720 Rw6G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	205
Acc65I	GGTACC	1 cut(s)	1172
AccB1I	GGYRCC	2 cut(s)	1010, 1172
AccIII	TCCGGA	1 cut(s)	1302
AciI	CCGC	3 cut(s)	617, 1048, 1078
AclWI	GGATC	2 cut(s)	1099, 1313
AcsI	RAATTY	3 cut(s)	297, 586, 1033
AcuI	CTGAAG	2 cut(s)	53, 1158
AfaI	GTAC	3 cut(s)	772, 933, 1174
AfiI	CCNNNNNNNGG	4 cut(s)	623, 629, 694, 1162
AgsI	TTSAA	8 cut(s)	140, 194, 567, 659, 793, 1038, 1054, 1235
AjnI	CCWGG	5 cut(s)	126, 622, 671, 742, 915
AjuI	GAANNNNNNNTTGG	2 cut(s)	577, 609
AloI	GAACNNNNNNTCC	2 cut(s)	503, 535
AluBI	AGCT	9 cut(s)	73, 103, 410, 461, 508, 662, 820, 865, 1192
AluI	AGCT	9 cut(s)	73, 103, 410, 461, 508, 662, 820, 865, 1192
AlwI	GGATC	2 cut(s)	1099, 1313
Aor13HI	TCCGGA	1 cut(s)	1302
AoxI	GGCC	4 cut(s)	420, 652, 1218, 1248
ApeKI	GCWGC	9 cut(s)	155, 158, 349, 458, 707, 716, 719, 1064, 1086
ApoI	RAATTY	3 cut(s)	297, 586, 1033
Asp718I	GGTACC	1 cut(s)	1172
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	3 cut(s)	644, 917, 1083
BaeI	ACNNNNGTAYC	2 cut(s)	1164, 1197
BanI	GGYRCC	2 cut(s)	1010, 1172
BbvI	GCAGC	9 cut(s)	142, 145, 336, 470, 694, 703, 706, 1051, 1073
BccI	CCATC	4 cut(s)	488, 688, 895, 902
BceAI	ACGGC	3 cut(s)	185, 437, 720
BciT130I	CCWGG	5 cut(s)	128, 624, 673, 744, 917
BciVI	GTATCC	1 cut(s)	142
BfaI	CTAG	2 cut(s)	462, 1160
BfmI	CTRYAG	2 cut(s)	159, 473
BfuAI	ACCTGC	1 cut(s)	205
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	9 cut(s)	156, 159, 350, 459, 708, 717, 720, 1065, 1087
BlsI	GCNGC	9 cut(s)	157, 160, 351, 460, 709, 718, 721, 1066, 1088
Bme1390I	CCNGG	5 cut(s)	128, 624, 673, 744, 917
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	3 cut(s)	670, 1012, 1174
BmrFI	CCNGG	5 cut(s)	128, 624, 673, 744, 917
BmsI	GCATC	3 cut(s)	99, 361, 1000
BpmI	CTGGAG	1 cut(s)	687
BpuEI	CTTGAG	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	672
BsaWI	WCCGGW	1 cut(s)	1302
BsaXI	ACNNNNNCTCC	2 cut(s)	818, 848
Bsc4I	CCNNNNNNNGG	4 cut(s)	623, 629, 694, 1162
Bse1I	ACTGG	3 cut(s)	226, 670, 930
Bse3DI	GCAATG	1 cut(s)	170
BseAI	TCCGGA	1 cut(s)	1302
BseBI	CCWGG	5 cut(s)	128, 624, 673, 744, 917
BseDI	CCNNGG	1 cut(s)	672
BseGI	GGATG	1 cut(s)	991
BseLI	CCNNNNNNNGG	4 cut(s)	623, 629, 694, 1162
BseMI	GCAATG	1 cut(s)	170
BseMII	CTCAG	2 cut(s)	1019, 1230
BseNI	ACTGG	3 cut(s)	226, 670, 930
BseRI	GAGGAG	2 cut(s)	294, 1256
BseXI	GCAGC	9 cut(s)	142, 145, 336, 470, 694, 703, 706, 1051, 1073
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	4 cut(s)	422, 654, 1220, 1250
BshNI	GGYRCC	2 cut(s)	1010, 1172
BsiSI	CCGG	1 cut(s)	1303
BslFI	GGGAC	2 cut(s)	492, 769
BslI	CCNNNNNNNGG	4 cut(s)	623, 629, 694, 1162
BsmFI	GGGAC	2 cut(s)	492, 769
BsnI	GGCC	4 cut(s)	422, 654, 1220, 1250
Bsp13I	TCCGGA	1 cut(s)	1302
Bsp1407I	TGTACA	1 cut(s)	770
Bsp143I	GATC	3 cut(s)	883, 1104, 1305
BspACI	CCGC	3 cut(s)	617, 1048, 1078
BspANI	GGCC	4 cut(s)	422, 654, 1220, 1250
BspCNI	CTCAG	2 cut(s)	1018, 1231
BspEI	TCCGGA	1 cut(s)	1302
BspHI	TCATGA	1 cut(s)	1021
BspLI	GGNNCC	3 cut(s)	670, 1012, 1174
BspMAI	CTGCAG	2 cut(s)	163, 477
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	2 cut(s)	1099, 1313
BspT107I	GGYRCC	2 cut(s)	1010, 1172
BsrDI	GCAATG	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	770
BsrI	ACTGG	3 cut(s)	226, 670, 930
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	3 cut(s)	883, 1104, 1305
Bst2UI	CCWGG	5 cut(s)	128, 624, 673, 744, 917
Bst4CI	ACNGT	5 cut(s)	313, 340, 775, 1058, 1320
Bst6I	CTCTTC	1 cut(s)	1125
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstAUI	TGTACA	1 cut(s)	770
BstC8I	GCNNGC	4 cut(s)	1218, 1248, 1271, 1275
BstDEI	CTNAG	5 cut(s)	99, 304, 1005, 1222, 1239
BstF5I	GGATG	1 cut(s)	991
BstKTI	GATC	3 cut(s)	886, 1107, 1308
BstMBI	GATC	3 cut(s)	883, 1104, 1305
BstNI	CCWGG	5 cut(s)	128, 624, 673, 744, 917
BstNSI	RCATGY	3 cut(s)	325, 649, 1277
BstSCI	CCNGG	5 cut(s)	126, 622, 671, 742, 915
BstSFI	CTRYAG	2 cut(s)	159, 473
BstV1I	GCAGC	9 cut(s)	142, 145, 336, 470, 694, 703, 706, 1051, 1073
BstX2I	RGATCY	1 cut(s)	1305
BstYI	RGATCY	1 cut(s)	1305
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	4 cut(s)	422, 654, 1220, 1250
BtsCI	GGATG	1 cut(s)	991
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	2 cut(s)	345, 470
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	4 cut(s)	1218, 1248, 1271, 1275
CciI	TCATGA	1 cut(s)	1021
Cfr13I	GGNCC	1 cut(s)	421
CseI	GACGC	1 cut(s)	489
Csp6I	GTAC	3 cut(s)	771, 932, 1173
CviAII	CATG	8 cut(s)	44, 322, 371, 646, 887, 1022, 1030, 1274
CviQI	GTAC	3 cut(s)	771, 932, 1173
DdeI	CTNAG	5 cut(s)	99, 304, 1005, 1222, 1239
DpnI	GATC	3 cut(s)	885, 1106, 1307
DpnII	GATC	3 cut(s)	883, 1104, 1305
DraI	TTTAAA	1 cut(s)	942
Eam1104I	CTCTTC	1 cut(s)	1125
EarI	CTCTTC	1 cut(s)	1125
Eco147I	AGGCCT	1 cut(s)	1220
Eco57I	CTGAAG	2 cut(s)	53, 1158
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRI	GAATTC	2 cut(s)	297, 1033
EcoRII	CCWGG	5 cut(s)	126, 622, 671, 742, 915
FaeI	CATG	8 cut(s)	47, 325, 374, 649, 890, 1025, 1033, 1277
FalI	AAGNNNNNCTT	4 cut(s)	804, 836, 1205, 1237
FaqI	GGGAC	2 cut(s)	492, 769
FatI	CATG	8 cut(s)	43, 321, 370, 645, 886, 1021, 1029, 1273
FauI	CCCGC	1 cut(s)	624
Fnu4HI	GCNGC	9 cut(s)	156, 159, 350, 459, 708, 717, 720, 1065, 1087
FokI	GGATG	1 cut(s)	978
Fsp4HI	GCNGC	9 cut(s)	156, 159, 350, 459, 708, 717, 720, 1065, 1087
FspBI	CTAG	2 cut(s)	462, 1160
GluI	GCNGC	9 cut(s)	156, 159, 350, 459, 708, 717, 720, 1065, 1087
GsuI	CTGGAG	1 cut(s)	687
HaeIII	GGCC	4 cut(s)	422, 654, 1220, 1250
HapII	CCGG	1 cut(s)	1303
HgaI	GACGC	1 cut(s)	489
Hin1II	CATG	8 cut(s)	47, 325, 374, 649, 890, 1025, 1033, 1277
HincII	GTYRAC	2 cut(s)	979, 1183
HindII	GTYRAC	2 cut(s)	979, 1183
HindIII	AAGCTT	3 cut(s)	101, 818, 863
HinfI	GANTC	4 cut(s)	90, 635, 684, 793
HpaI	GTTAAC	1 cut(s)	979
HpaII	CCGG	1 cut(s)	1303
HphI	GGTGA	3 cut(s)	644, 917, 1083
Hpy166II	GTNNAC	6 cut(s)	316, 547, 771, 934, 979, 1183
Hpy188I	TCNGA	4 cut(s)	33, 55, 598, 873
Hpy188III	TCNNGA	7 cut(s)	242, 400, 639, 797, 898, 1022, 1303
Hpy8I	GTNNAC	6 cut(s)	316, 547, 771, 934, 979, 1183
HpyAV	CCTTC	4 cut(s)	21, 204, 603, 665
HpyCH4III	ACNGT	5 cut(s)	313, 340, 775, 1058, 1320
HpyCH4IV	ACGT	2 cut(s)	27, 395
HpyF3I	CTNAG	5 cut(s)	99, 304, 1005, 1222, 1239
HpySE526I	ACGT	2 cut(s)	27, 395
Hsp92II	CATG	8 cut(s)	47, 325, 374, 649, 890, 1025, 1033, 1277
Kpn2I	TCCGGA	1 cut(s)	1302
KpnI	GGTACC	1 cut(s)	1176
KspAI	GTTAAC	1 cut(s)	979
Kzo9I	GATC	3 cut(s)	883, 1104, 1305
LmnI	GCTCC	2 cut(s)	668, 1243
Lsp1109I	GCAGC	9 cut(s)	142, 145, 336, 470, 694, 703, 706, 1051, 1073
LweI	GCATC	3 cut(s)	99, 361, 1000
MaeI	CTAG	2 cut(s)	462, 1160
MaeII	ACGT	2 cut(s)	27, 395
MaeIII	GTNAC	4 cut(s)	307, 391, 1150, 1320
MalI	GATC	3 cut(s)	885, 1106, 1307
MboI	GATC	3 cut(s)	883, 1104, 1305
MboII	GAAGA	6 cut(s)	397, 824, 860, 1112, 1151, 1222
MflI	RGATCY	1 cut(s)	1305
MluCI	AATT	6 cut(s)	176, 297, 586, 858, 1033, 1296
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	661
MroI	TCCGGA	1 cut(s)	1302
MseI	TTAA	4 cut(s)	825, 861, 941, 978
MspA1I	CMGCKG	2 cut(s)	410, 508
MspI	CCGG	1 cut(s)	1303
MspR9I	CCNGG	5 cut(s)	128, 624, 673, 744, 917
MvaI	CCWGG	5 cut(s)	128, 624, 673, 744, 917
NdeII	GATC	3 cut(s)	883, 1104, 1305
NlaIII	CATG	8 cut(s)	47, 325, 374, 649, 890, 1025, 1033, 1277
NlaIV	GGNNCC	3 cut(s)	670, 1012, 1174
NmuCI	GTSAC	2 cut(s)	391, 1150
NspI	RCATGY	3 cut(s)	325, 649, 1277
PaeI	GCATGC	1 cut(s)	1277
PagI	TCATGA	1 cut(s)	1021
PceI	AGGCCT	1 cut(s)	1220
PfeI	GAWTC	3 cut(s)	635, 684, 793
PkrI	GCNGC	9 cut(s)	157, 160, 351, 460, 709, 718, 721, 1066, 1088
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Psp6I	CCWGG	5 cut(s)	126, 622, 671, 742, 915
PspGI	CCWGG	5 cut(s)	126, 622, 671, 742, 915
PspN4I	GGNNCC	3 cut(s)	670, 1012, 1174
PspPI	GGNCC	1 cut(s)	421
PsrI	GAACNNNNNNTAC	2 cut(s)	915, 947
PstI	CTGCAG	2 cut(s)	163, 477
PsuI	RGATCY	1 cut(s)	1305
PvuII	CAGCTG	2 cut(s)	410, 508
RsaI	GTAC	3 cut(s)	772, 933, 1174
RsaNI	GTAC	3 cut(s)	771, 932, 1173
SaqAI	TTAA	4 cut(s)	825, 861, 941, 978
SatI	GCNGC	9 cut(s)	156, 159, 350, 459, 708, 717, 720, 1065, 1087
Sau3AI	GATC	3 cut(s)	883, 1104, 1305
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	5 cut(s)	128, 624, 673, 744, 917
SfaNI	GCATC	3 cut(s)	99, 361, 1000
SfcI	CTRYAG	2 cut(s)	159, 473
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
SphI	GCATGC	1 cut(s)	1277
Sse9I	AATT	6 cut(s)	176, 297, 586, 858, 1033, 1296
SseBI	AGGCCT	1 cut(s)	1220
SsiI	CCGC	3 cut(s)	617, 1048, 1078
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	2 cut(s)	462, 1160
StuI	AGGCCT	1 cut(s)	1220
StyD4I	CCNGG	5 cut(s)	126, 622, 671, 742, 915
TaaI	ACNGT	5 cut(s)	313, 340, 775, 1058, 1320
TaiI	ACGT	2 cut(s)	30, 398
TasI	AATT	6 cut(s)	176, 297, 586, 858, 1033, 1296
TatI	WGTACW	2 cut(s)	770, 931
TfiI	GAWTC	3 cut(s)	635, 684, 793
Tru1I	TTAA	4 cut(s)	825, 861, 941, 978
Tru9I	TTAA	4 cut(s)	825, 861, 941, 978
TscAI	CASTG	2 cut(s)	345, 477
TseFI	GTSAC	2 cut(s)	391, 1150
TseI	GCWGC	9 cut(s)	155, 158, 349, 458, 707, 716, 719, 1064, 1086
Tsp45I	GTSAC	2 cut(s)	391, 1150
TspDTI	ATGAA	4 cut(s)	825, 1038, 1046, 1217
TspRI	CASTG	2 cut(s)	345, 477
XapI	RAATTY	3 cut(s)	297, 586, 1033
XceI	RCATGY	3 cut(s)	325, 649, 1277
XcmI	CCANNNNNNNNNTGG	2 cut(s)	407, 905
XspI	CTAG	2 cut(s)	462, 1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.