Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007075

Physical Location & Seq

Genomic Coordinates Reverse (-)

21561453 .. 21562445

Gene Structure 993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAAATGCGTAACGAACTTTAACTGTTTTTCAAACCCAAAACGTCTTCTCCAACCGCCCAAAACCCTAAACCCTCAGAACCCACCATCCATAGTTGAAAAATTAAAGAAATGTTCGACTCCAACAGAGCTAGAAAGTGTATGTGCCTCAATGATCAAGACCAATGCCATCCAAGACTCTTTCTTTACGAACCAACTCATCACCGCCCTTTCGACTTTTTCCCACCTAGATTATGCAGTTTTAGCCTTCACCCAGATGGAAAATCCGAATGTTTTCGTCTACAATGCGATGATCAGAGGCTTTGTTCGTTGCGACCACCCATTTCAGGCTTTGAATTGTTACATCAATATGTTGAGGGACATGGTTTTGCCTAGCAGTTATACGTTTTCGCCGTTGATCAAGGCCTGCACCTCTCTGTCCACATTGCGGGTTGGAGAGTCTGTTCATTGTCACATTTGGAGAAATGGGTTTGGCTCACATGTGTTTGTTCAGACTGCTTTGATTGATTTTTACTCGAAGTTGCGGCAAATAAGTGAATCCAGAAGGGTGTTCGATGAAATGCCTGAGAGAGACCCTTTTGCATGGACTACAATGGTTTCGTCTCACGCTCGAGTGGGGGATATGAGTTCGGCGAGGATATTATTCGATGAGATGACGGAGAAGAATGCAGCTACTTGGAATACAATGATTGACGGCTACGCAAGAGTAGGTGATGTAGAATCTGCAGAGTTGTTGTTTAATCAGATGCCAACTAGGGATATAATATCATGGACTACTATGATTGATTGTTATTCTCAGAACAAGAAATTTCGAGAAGCATTAGCAATTTTCGATGACATGAGGACTAATGGGATCAACCCTGATGAAGTGACCATGGCAACTGTTATTTCAGCTTGTGCCCATCTCGGAGCTCTTGACTTGGGAAAAGAGATACATCTTTACACGATGGAGAACAGATTTGATCGATCGATGTTTATATCGGATCTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0019538 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 bHLH-MYC_N

Protein Analysis

331

Amino Acids

37.59

Weight (kDa)

6.14

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	89 - 136	4.8e-10	PPR repeat family
PPR_2	PF13041	222 - 253	1.6e-07	PPR repeat family
PPR_1	PF12854	222 - 249	1.9e-07	PPR repeat
PPR	PF01535	225 - 253	2.2e-08	PPR repeat
PPR_2	PF13041	252 - 301	2.2e-14	PPR repeat family
PPR	PF01535	255 - 285	4.4e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06143
fragaria_vesca	FvH4_2g21860
malus_domestica	MD05G1200200.v1.1 MD10G1186800.v1.1
prunus_persica	Prupe.8G226200_v2.0.a1
pyrus_communis	pycom05g18700
rosa_chinensis	RchiOBHm_Chr6g0288721 RchiOBHm_Chr6g0288731
rosa_laevigata	RLG00000012369 RLG00000012373 RLG00000012374 RLG00000012381
rosa_multiflora	Rmu_sc0004861.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179910
rosa_rugosa	Rorug06G0197800 Rorug06G0197900 Rorug06G0198000
rosa_samantha	Rh6BG314900 Rh6BG315000 Rh6CG322200 Rh6CG322300 Rh6DG308000 Rh6DG308100
rosa_wichuraiana	Rw6G026720 Rw6G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	4 cut(s)	56, 204, 427, 523
AclWI	GGATC	2 cut(s)	860, 990
AcsI	RAATTY	1 cut(s)	806
AfiI	CCNNNNNNNGG	2 cut(s)	325, 426
AflIII	ACRYGT	1 cut(s)	478
AgsI	TTSAA	3 cut(s)	33, 98, 334
AloI	GAACNNNNNNTCC	4 cut(s)	71, 103, 426, 458
AluBI	AGCT	4 cut(s)	130, 671, 893, 911
AluI	AGCT	4 cut(s)	130, 671, 893, 911
Alw21I	GWGCWC	1 cut(s)	913
Alw26I	GTCTC	2 cut(s)	564, 606
AlwI	GGATC	2 cut(s)	860, 990
Ama87I	CYCGRG	1 cut(s)	609
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	1 cut(s)	668
ApoI	RAATTY	1 cut(s)	806
Asp700I	GAANNNNTTC	1 cut(s)	272
AsuHPI	GGTGA	3 cut(s)	193, 241, 722
AvaI	CYCGRG	1 cut(s)	609
BaeGI	GKGCMC	1 cut(s)	901
BanII	GRGCYC	1 cut(s)	913
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	913
BbvI	GCAGC	1 cut(s)	680
BccI	CCATC	5 cut(s)	94, 176, 250, 909, 940
BceAI	ACGGC	2 cut(s)	376, 709
BclI	TGATCA	3 cut(s)	153, 291, 396
BcoDI	GTCTC	2 cut(s)	564, 606
BfaI	CTAG	4 cut(s)	131, 227, 372, 753
BfmI	CTRYAG	1 cut(s)	723
BisI	GCNGC	2 cut(s)	524, 669
BlsI	GCNGC	2 cut(s)	525, 670
BmeT110I	CYCGRG	1 cut(s)	609
BmsI	GCATC	1 cut(s)	735
BpiI	GAAGAC	1 cut(s)	38
Bsa29I	ATCGAT	2 cut(s)	964, 968
BsaI	GGTCTC	1 cut(s)	564
BsaJI	CCNNGG	1 cut(s)	873
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 426, 456
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 426
Bse3DI	GCAATG	1 cut(s)	422
BseCI	ATCGAT	2 cut(s)	964, 968
BseDI	CCNNGG	1 cut(s)	873
BseGI	GGATG	2 cut(s)	86, 168
BseLI	CCNNNNNNNGG	2 cut(s)	325, 426
BseMI	GCAATG	1 cut(s)	422
BseMII	CTCAG	3 cut(s)	89, 555, 809
BseSI	GKGCMC	1 cut(s)	901
BseXI	GCAGC	1 cut(s)	680
BsgI	GTGCAG	2 cut(s)	391, 971
Bsh1285I	CGRYCG	1 cut(s)	968
BshFI	GGCC	1 cut(s)	404
BshVI	ATCGAT	2 cut(s)	964, 968
BsiEI	CGRYCG	1 cut(s)	968
BsiHKAI	GWGCWC	1 cut(s)	913
BsiHKCI	CYCGRG	1 cut(s)	609
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	325, 426
BsmAI	GTCTC	2 cut(s)	564, 606
BsmBI	CGTCTC	1 cut(s)	606
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	670
BsnI	GGCC	1 cut(s)	404
Bso31I	GGTCTC	1 cut(s)	564
BsoBI	CYCGRG	1 cut(s)	609
Bsp1286I	GDGCHC	2 cut(s)	901, 913
Bsp143I	GATC	7 cut(s)	153, 291, 396, 852, 961, 965, 982
Bsp19I	CCATGG	1 cut(s)	873
BspACI	CCGC	4 cut(s)	56, 204, 427, 523
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	3 cut(s)	88, 556, 808
BspDI	ATCGAT	2 cut(s)	964, 968
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	2 cut(s)	860, 990
BspTNI	GGTCTC	1 cut(s)	564
BsrDI	GCAATG	1 cut(s)	422
BssECI	CCNNGG	1 cut(s)	873
BssMI	GATC	7 cut(s)	153, 291, 396, 852, 961, 965, 982
BssT1I	CCWWGG	1 cut(s)	873
Bst4CI	ACNGT	2 cut(s)	26, 883
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	3 cut(s)	75, 564, 795
BstDSI	CCRYGG	1 cut(s)	873
BstF5I	GGATG	2 cut(s)	86, 168
BstKTI	GATC	7 cut(s)	156, 294, 399, 855, 964, 968, 985
BstMAI	GTCTC	2 cut(s)	564, 606
BstMBI	GATC	7 cut(s)	153, 291, 396, 852, 961, 965, 982
BstMCI	CGRYCG	1 cut(s)	968
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	482
BstSFI	CTRYAG	1 cut(s)	723
BstSLI	GKGCMC	1 cut(s)	901
BstV1I	GCAGC	1 cut(s)	680
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	982
BstYI	RGATCY	1 cut(s)	982
Bsu15I	ATCGAT	2 cut(s)	964, 968
BsuRI	GGCC	1 cut(s)	404
BsuTUI	ATCGAT	2 cut(s)	964, 968
BtgI	CCRYGG	1 cut(s)	873
BtgZI	GCGATG	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	86, 168
BtsIMutI	CAGTG	1 cut(s)	988
Cac8I	GCNNGC	1 cut(s)	406
ClaI	ATCGAT	2 cut(s)	964, 968
CviAII	CATG	6 cut(s)	361, 479, 582, 768, 838, 874
DdeI	CTNAG	3 cut(s)	75, 564, 795
DpnI	GATC	7 cut(s)	155, 293, 398, 854, 963, 967, 984
DpnII	GATC	7 cut(s)	153, 291, 396, 852, 961, 965, 982
Ecl136II	GAGCTC	1 cut(s)	911
Eco130I	CCWWGG	1 cut(s)	873
Eco147I	AGGCCT	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	913
Eco31I	GGTCTC	1 cut(s)	564
Eco53kI	GAGCTC	1 cut(s)	911
Eco88I	CYCGRG	1 cut(s)	609
EcoICRI	GAGCTC	1 cut(s)	911
EcoT14I	CCWWGG	1 cut(s)	873
EcoT38I	GRGCYC	1 cut(s)	913
ErhI	CCWWGG	1 cut(s)	873
Esp3I	CGTCTC	1 cut(s)	606
FaeI	CATG	6 cut(s)	364, 482, 585, 771, 841, 877
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	6 cut(s)	360, 478, 581, 767, 837, 873
FauI	CCCGC	1 cut(s)	420
FbaI	TGATCA	3 cut(s)	153, 291, 396
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	524, 669
FokI	GGATG	2 cut(s)	73, 155
FriOI	GRGCYC	1 cut(s)	913
Fsp4HI	GCNGC	2 cut(s)	524, 669
FspBI	CTAG	4 cut(s)	131, 227, 372, 753
GluI	GCNGC	2 cut(s)	524, 669
HaeIII	GGCC	1 cut(s)	404
Hin1II	CATG	6 cut(s)	364, 482, 585, 771, 841, 877
HinfI	GANTC	5 cut(s)	118, 176, 437, 536, 719
HphI	GGTGA	3 cut(s)	193, 241, 722
Hpy166II	GTNNAC	2 cut(s)	280, 420
Hpy188I	TCNGA	8 cut(s)	78, 267, 296, 492, 744, 798, 908, 982
Hpy188III	TCNNGA	4 cut(s)	157, 540, 812, 914
Hpy8I	GTNNAC	2 cut(s)	280, 420
HpyAV	CCTTC	2 cut(s)	256, 537
HpyCH4III	ACNGT	2 cut(s)	26, 883
HpyCH4IV	ACGT	2 cut(s)	43, 383
HpyCH4V	TGCA	6 cut(s)	236, 408, 581, 668, 725, 988
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	3 cut(s)	75, 564, 795
HpySE526I	ACGT	2 cut(s)	43, 383
Hsp92II	CATG	6 cut(s)	364, 482, 585, 771, 841, 877
Ksp22I	TGATCA	3 cut(s)	153, 291, 396
Kzo9I	GATC	7 cut(s)	153, 291, 396, 852, 961, 965, 982
LmnI	GCTCC	1 cut(s)	908
LpnPI	CCDG	6 cut(s)	266, 311, 418, 553, 576, 873
Lsp1109I	GCAGC	1 cut(s)	680
LweI	GCATC	1 cut(s)	735
MaeI	CTAG	4 cut(s)	131, 227, 372, 753
MaeII	ACGT	2 cut(s)	43, 383
MaeIII	GTNAC	4 cut(s)	10, 338, 449, 868
MalI	GATC	7 cut(s)	155, 293, 398, 854, 963, 967, 984
MboI	GATC	7 cut(s)	153, 291, 396, 852, 961, 965, 982
MboII	GAAGA	2 cut(s)	38, 673
MflI	RGATCY	1 cut(s)	982
MhlI	GDGCHC	2 cut(s)	901, 913
MluCI	AATT	4 cut(s)	101, 334, 806, 825
MlyI	GAGTC	3 cut(s)	112, 170, 446
MmeI	TCCRAC	3 cut(s)	76, 146, 412
MnlI	CCTC	7 cut(s)	84, 157, 290, 348, 421, 627, 834
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	3 cut(s)	21, 104, 738
MslI	CAYNNNNRTG	2 cut(s)	254, 347
Mva1269I	GAATGC	1 cut(s)	670
MwoI	GCNNNNNNNGC	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	873
NdeII	GATC	7 cut(s)	153, 291, 396, 852, 961, 965, 982
NlaIII	CATG	6 cut(s)	364, 482, 585, 771, 841, 877
NmuCI	GTSAC	2 cut(s)	449, 868
NspI	RCATGY	1 cut(s)	482
PaeR7I	CTCGAG	1 cut(s)	609
PceI	AGGCCT	1 cut(s)	404
PciI	ACATGT	1 cut(s)	478
PcsI	WCGNNNNNNNCGW	1 cut(s)	389
PctI	GAATGC	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	536, 719
PkrI	GCNGC	2 cut(s)	525, 670
Ple19I	CGATCG	1 cut(s)	968
PleI	GAGTC	3 cut(s)	112, 170, 445
PpsI	GAGTC	3 cut(s)	112, 170, 445
PscI	ACATGT	1 cut(s)	478
Psp124BI	GAGCTC	1 cut(s)	913
PspXI	VCTCGAGB	1 cut(s)	609
PstI	CTGCAG	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	982
PvuI	CGATCG	1 cut(s)	968
RseI	CAYNNNNRTG	2 cut(s)	254, 347
SacI	GAGCTC	1 cut(s)	913
SaqAI	TTAA	3 cut(s)	21, 104, 738
SatI	GCNGC	2 cut(s)	524, 669
Sau3AI	GATC	7 cut(s)	153, 291, 396, 852, 961, 965, 982
SchI	GAGTC	3 cut(s)	112, 170, 446
SduI	GDGCHC	2 cut(s)	901, 913
SetI	ASST	9 cut(s)	46, 132, 228, 386, 413, 673, 712, 895, 913
SfaNI	GCATC	1 cut(s)	735
SfcI	CTRYAG	1 cut(s)	723
Sfr274I	CTCGAG	1 cut(s)	609
SlaI	CTCGAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	2 cut(s)	254, 347
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	4 cut(s)	101, 334, 806, 825
SseBI	AGGCCT	1 cut(s)	404
SsiI	CCGC	4 cut(s)	56, 204, 427, 523
SspMI	CTAG	4 cut(s)	131, 227, 372, 753
SstI	GAGCTC	1 cut(s)	913
StuI	AGGCCT	1 cut(s)	404
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	2 cut(s)	26, 883
TaiI	ACGT	2 cut(s)	46, 386
TasI	AATT	4 cut(s)	101, 334, 806, 825
TauI	GCSGC	1 cut(s)	526
TfiI	GAWTC	2 cut(s)	536, 719
Tru1I	TTAA	3 cut(s)	21, 104, 738
Tru9I	TTAA	3 cut(s)	21, 104, 738
TseFI	GTSAC	2 cut(s)	449, 868
TseI	GCWGC	1 cut(s)	668
Tsp45I	GTSAC	2 cut(s)	449, 868
TspDTI	ATGAA	4 cut(s)	17, 434, 570, 879
TspGWI	ACGGA	1 cut(s)	671
XapI	RAATTY	1 cut(s)	806
XceI	RCATGY	1 cut(s)	482
XhoI	CTCGAG	1 cut(s)	609
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	4 cut(s)	131, 227, 372, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.