AT1G07900

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004073
Physical Location & Seq
Forward (+)
2442570 .. 2443746
1177 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07900.1

Sequence Viewer

Length: 573 bp
ATGGAGAGTAAAAGTGACGCTTCTGTCGCCACCACTCCAATCATATCTTCTTCCTCTTCTCCTCCACCATCACTTTCACCGCGGGTAGTGCTTAGTCCATGTGCTGCTTGCAAAATCTTGAGGCGACGTTGTGCAGAGAGATGCGTTTTGGCACCGTACTTCCCTCCAACGGATCCGGCCAAGTTCACTATTGCACACCGCGTCTTTGGAGCCAGCAACATCATTAAGTTCTTGCAGGAACTTCCAGAATCACAAAGAACTGATGCGGTCAACAGTATGGTGTATGAAGCCGAAGCTAGAATAAGAGATCCAGTGTATGGATGTGCAGGTGCCATATACCATTTACAAAGACAAGTGAGTGAACTCCAAGCACAACTTGCAAAAGCTCAAGTGGAGATGGTGAATATGCAATTTCAAAGATCAAATTTACTAGAGCTGATTTATAACATGGACCAACAACAGAAACAAGAACAAGATAATATGTCCTTTGAGAGCAATGATTTGGGATTCCTTGAAGACAAGTCCAACACCAACTCATCAATGTTGTGGTGGGATCCTCTTTGGACATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

190

Amino Acids

21.41

Weight (kDa)

5.44

Isoelectric Point (pI)

62.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 33 - 130 2.5e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AarI CACCTGC 1 cut(s) 317
AasI GACNNNNNNGTC 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 317
AccB1I GGYRCC 2 cut(s) 151, 329
AccB7I CCANNNNNTGG 1 cut(s) 317
AccII CGCG 2 cut(s) 82, 201
AciI CCGC 4 cut(s) 80, 82, 199, 266
AclWI GGATC 5 cut(s) 167, 180, 302, 548, 561
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 1 cut(s) 424
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 2 cut(s) 169, 317
AflIII ACRYGT 1 cut(s) 566
AgsI TTSAA 2 cut(s) 416, 515
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AluBI AGCT 3 cut(s) 296, 386, 436
AluI AGCT 3 cut(s) 296, 386, 436
AlwI GGATC 5 cut(s) 167, 180, 302, 548, 561
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 424
AspS9I GGNCC 1 cut(s) 451
AsuHPI GGTGA 2 cut(s) 69, 412
AvaII GGWCC 1 cut(s) 451
BamHI GGATCC 2 cut(s) 172, 553
BanI GGYRCC 2 cut(s) 151, 329
BbsI GAAGAC 1 cut(s) 522
BbvI GCAGC 1 cut(s) 91
BccI CCATC 2 cut(s) 76, 391
BfaI CTAG 2 cut(s) 297, 431
BfuAI ACCTGC 1 cut(s) 317
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 451
BmiI GGNNCC 5 cut(s) 153, 174, 211, 331, 555
BmsI GCATC 2 cut(s) 131, 253
BpiI GAAGAC 1 cut(s) 522
BpuEI CTTGAG 2 cut(s) 139, 372
BsaJI CCNNGG 1 cut(s) 80
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 317
Bse1I ACTGG 1 cut(s) 311
Bse3DI GCAATG 1 cut(s) 502
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 326
BseLI CCNNNNNNNGG 2 cut(s) 169, 317
BseMI GCAATG 1 cut(s) 502
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 91
BsgI GTGCAG 2 cut(s) 153, 345
Bsh1236I CGCG 2 cut(s) 82, 201
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 2 cut(s) 151, 329
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 169, 317
BsnI GGCC 1 cut(s) 179
Bsp143I GATC 4 cut(s) 172, 307, 419, 553
BspACI CCGC 4 cut(s) 80, 82, 199, 266
BspANI GGCC 1 cut(s) 179
BspFNI CGCG 2 cut(s) 82, 201
BspLI GGNNCC 5 cut(s) 153, 174, 211, 331, 555
BspMI ACCTGC 1 cut(s) 317
BspPI GGATC 5 cut(s) 167, 180, 302, 548, 561
BspT107I GGYRCC 2 cut(s) 151, 329
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 4 cut(s) 172, 307, 419, 553
Bst4CI ACNGT 2 cut(s) 156, 275
Bst6I CTCTTC 1 cut(s) 61
BstAPI GCANNNNNTGC 1 cut(s) 377
BstC8I GCNNGC 2 cut(s) 109, 214
BstDEI CTNAG 1 cut(s) 92
BstDSI CCRYGG 1 cut(s) 80
BstF5I GGATG 1 cut(s) 326
BstFNI CGCG 2 cut(s) 82, 201
BstKTI GATC 4 cut(s) 175, 310, 422, 556
BstMBI GATC 4 cut(s) 172, 307, 419, 553
BstMWI GCNNNNNNNGC 3 cut(s) 26, 88, 377
BstNSI RCATGY 1 cut(s) 570
BstUI CGCG 2 cut(s) 82, 201
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 522
BstX2I RGATCY 3 cut(s) 172, 307, 553
BstYI RGATCY 3 cut(s) 172, 307, 553
BsuRI GGCC 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 80
BtsCI GGATG 1 cut(s) 326
BtsIMutI CAGTG 1 cut(s) 318
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 2 cut(s) 109, 214
Cfr13I GGNCC 1 cut(s) 451
Cfr42I CCGCGG 1 cut(s) 83
CseI GACGC 2 cut(s) 26, 190
Csp6I GTAC 1 cut(s) 157
CviAII CATG 3 cut(s) 99, 448, 567
CviJI RGCY 6 cut(s) 179, 212, 290, 296, 386, 436
CviKI_1 RGCY 6 cut(s) 179, 212, 290, 296, 386, 436
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 92
DpnI GATC 4 cut(s) 174, 309, 421, 555
DpnII GATC 4 cut(s) 172, 307, 419, 553
DrdI GACNNNNNNGTC 1 cut(s) 23
DseDI GACNNNNNNGTC 1 cut(s) 23
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 451
FaeI CATG 3 cut(s) 102, 451, 570
FalI AAGNNNNNCTT 3 cut(s) 36, 360, 392
FatI CATG 3 cut(s) 98, 447, 566
FauI CCCGC 1 cut(s) 75
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 2 cut(s) 297, 431
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 176
HgaI GACGC 2 cut(s) 26, 190
Hin1II CATG 3 cut(s) 102, 451, 570
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 2 cut(s) 248, 507
HpaII CCGG 1 cut(s) 176
HphI GGTGA 2 cut(s) 69, 412
Hpy166II GTNNAC 3 cut(s) 186, 271, 362
Hpy188III TCNNGA 2 cut(s) 118, 245
Hpy8I GTNNAC 3 cut(s) 186, 271, 362
Hpy99I CGWCG 1 cut(s) 129
HpyCH4III ACNGT 2 cut(s) 156, 275
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 7 cut(s) 111, 134, 194, 235, 326, 380, 409
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 88, 377
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 3 cut(s) 102, 451, 570
KspI CCGCGG 1 cut(s) 83
Kzo9I GATC 4 cut(s) 172, 307, 419, 553
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 6 cut(s) 189, 221, 226, 258, 312, 324
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 2 cut(s) 131, 253
MaeI CTAG 2 cut(s) 297, 431
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 14
MalI GATC 4 cut(s) 174, 309, 421, 555
MboI GATC 4 cut(s) 172, 307, 419, 553
MboII GAAGA 4 cut(s) 39, 42, 48, 527
MflI RGATCY 3 cut(s) 172, 307, 553
MluCI AATT 2 cut(s) 410, 424
MmeI TCCRAC 2 cut(s) 191, 549
MnlI CCTC 5 cut(s) 64, 72, 114, 174, 567
MseI TTAA 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 1 cut(s) 176
MvnI CGCG 2 cut(s) 82, 201
MwoI GCNNNNNNNGC 3 cut(s) 26, 88, 377
NdeII GATC 4 cut(s) 172, 307, 419, 553
NlaIII CATG 3 cut(s) 102, 451, 570
NlaIV GGNNCC 5 cut(s) 153, 174, 211, 331, 555
NmuCI GTSAC 1 cut(s) 14
NspI RCATGY 1 cut(s) 570
PaqCI CACCTGC 1 cut(s) 317
PciI ACATGT 1 cut(s) 566
PfeI GAWTC 2 cut(s) 248, 507
PflMI CCANNNNNTGG 1 cut(s) 317
PkrI GCNGC 1 cut(s) 106
PscI ACATGT 1 cut(s) 566
PsiI TTATAA 1 cut(s) 444
PspN4I GGNNCC 5 cut(s) 153, 174, 211, 331, 555
PspPI GGNCC 1 cut(s) 451
PsuI RGATCY 3 cut(s) 172, 307, 553
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SacII CCGCGG 1 cut(s) 83
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 4 cut(s) 172, 307, 419, 553
Sau96I GGNCC 1 cut(s) 451
SetI ASST 5 cut(s) 130, 298, 331, 388, 438
SfaNI GCATC 2 cut(s) 131, 253
Sfr303I CCGCGG 1 cut(s) 83
SgrBI CCGCGG 1 cut(s) 83
SinI GGWCC 1 cut(s) 451
SmlI CTYRAG 2 cut(s) 118, 387
SmoI CTYRAG 2 cut(s) 118, 387
Sse9I AATT 2 cut(s) 410, 424
SsiI CCGC 4 cut(s) 80, 82, 199, 266
SspMI CTAG 2 cut(s) 297, 431
TaaI ACNGT 2 cut(s) 156, 275
TaiI ACGT 1 cut(s) 130
TasI AATT 2 cut(s) 410, 424
TfiI GAWTC 2 cut(s) 248, 507
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 1 cut(s) 318
Van91I CCANNNNNTGG 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 451
XapI RAATTY 1 cut(s) 424
XceI RCATGY 1 cut(s) 570
XspI CTAG 2 cut(s) 297, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.