Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004073

Physical Location & Seq

Genomic Coordinates Forward (+)

8993055 .. 8994376

Gene Structure 1322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g10580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAGTGCAGTACTGAAACAATGAACACAAATTACACAACCACTTCATCAACTATGTCTCAATCTCCTCCTTCTTCTTCACCATCGTCTCCTCCAACCCCAACTCCCACTCCATCTCCACCAGTTGTTATAAGTCCTTGTGCTGCATGCAAAATCTTGAGGAGAAGATGTGCAGACAAGTGCGTTTTGGCCCCTTACTTTCCTCCCTCTGATCCAGTCAAGTTTACTATAGCTCATCGTGTCTTTGGGGCAAGCAATATCATCAAGTTCTTGCAGGAACTTCCAGAATCTCAAAGAGCCGATGCAGTGAGCAGCATGGTTTATGAGGCAAGTGCAAGAATTAGAGACCCAGTTTACGGGTGTGCTGGAGCAATCTGCCACTTGCAAAAGCAAGTGAATGAGCTGCAGGCACAACTGGCCAAGGCACAGGCTGAGCTTGTCAACATGCAATGCCAGCAAACCAACCTTGTGGCTCTGATTTGCATGGAAATGTCGCACCCTAATTCCGAGCAAGGATCTCCTGCACAATCACTTGATCACAACTTCGTCGCCACCAATCCTCACGGCGGCAACCAGACCAACTTAGGCTTCCTTGATGATTCCACCACGCTAGGCTCATTGTGGGAACCACTTTGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

214

Amino Acids

23.03

Weight (kDa)

5.68

Isoelectric Point (pI)

71.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07900 AT2G28500
fragaria_vesca	FvH4_3g33510 FvH4_7g20130
malus_domestica	MD01G1130900.v1.1 MD03G1111600.v1.1 MD07G1178900.v1.1 MD11G1125200.v1.1
prunus_persica	Prupe.2G218000_v2.0.a1 Prupe.6G093900_v2.0.a1
pyrus_communis	pycom01g13960 pycom07g17260 pycom11g10580
rosa_chinensis	RchiOBHm_Chr1g0364081 RchiOBHm_Chr5g0060941
rosa_laevigata	RLG00000027518 RLG00000035417
rosa_multiflora	Rmu_sc0000071.1_g000023 Rmu_sc0000420.1_g000003
rosa_roxburghii	Rroxscaffold_1G00019690 Rroxscaffold_4G00292660
rosa_rugosa	Rorug01G0313300 Rorug05G0335400
rosa_samantha	Rh1AG320800 Rh1BG284000 Rh1CG300400 Rh1DG315400 Rh5AG398000 Rh5BG410700 Rh5CG435900 Rh5DG425200
rosa_wichuraiana	Rw1G028440 Rw5G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	131
AciI	CCGC	1 cut(s)	567
AclWI	GGATC	2 cut(s)	206, 523
AcoI	YGGCCR	1 cut(s)	417
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	2 cut(s)	356, 566
AjuI	GAANNNNNNNTTGG	2 cut(s)	572, 604
AluBI	AGCT	3 cut(s)	233, 403, 436
AluI	AGCT	3 cut(s)	233, 403, 436
Alw26I	GTCTC	3 cut(s)	63, 93, 339
AlwI	GGATC	2 cut(s)	206, 523
AoxI	GGCC	2 cut(s)	189, 417
ApeKI	GCWGC	3 cut(s)	143, 312, 403
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	419
BbvI	GCAGC	3 cut(s)	130, 324, 390
BccI	CCATC	2 cut(s)	91, 121
BceAI	ACGGC	1 cut(s)	580
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	3 cut(s)	63, 93, 339
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	2 cut(s)	228, 404
BisI	GCNGC	4 cut(s)	144, 313, 404, 568
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	4 cut(s)	145, 314, 405, 569
BmcAI	AGTACT	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	192, 627
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	292
BmuI	ACTGGG	1 cut(s)	344
BpmI	CTGGAG	1 cut(s)	387
Bpu1102I	GCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	178
BsaI	GGTCTC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	420
BsaXI	ACNNNNNCTCC	8 cut(s)	88, 94, 100, 118, 124, 130, 154, 184
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 566
Bse1I	ACTGG	4 cut(s)	122, 215, 350, 420
Bse3DI	GCAATG	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	420
BseLI	CCNNNNNNNGG	2 cut(s)	356, 566
BseMI	GCAATG	1 cut(s)	455
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	4 cut(s)	122, 215, 350, 420
BseRI	GAGGAG	3 cut(s)	57, 81, 175
BseXI	GCAGC	3 cut(s)	130, 324, 390
BsgI	GTGCAG	3 cut(s)	28, 192, 507
BshFI	GGCC	2 cut(s)	191, 419
BslI	CCNNNNNNNGG	2 cut(s)	356, 566
BsmAI	GTCTC	3 cut(s)	63, 93, 339
BsmBI	CGTCTC	1 cut(s)	93
BsnI	GGCC	2 cut(s)	191, 419
Bso31I	GGTCTC	1 cut(s)	339
Bsp143I	GATC	3 cut(s)	211, 515, 535
Bsp1720I	GCTNAGC	1 cut(s)	432
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	2 cut(s)	191, 419
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	2 cut(s)	192, 627
BspMAI	CTGCAG	1 cut(s)	408
BspPI	GGATC	2 cut(s)	206, 523
BspTNI	GGTCTC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	455
BsrI	ACTGG	4 cut(s)	122, 215, 350, 420
BssECI	CCNNGG	1 cut(s)	420
BssMI	GATC	3 cut(s)	211, 515, 535
BssT1I	CCWWGG	1 cut(s)	420
BstC8I	GCNNGC	4 cut(s)	148, 253, 408, 455
BstDEI	CTNAG	2 cut(s)	432, 583
BstKTI	GATC	3 cut(s)	214, 518, 538
BstMAI	GTCTC	3 cut(s)	63, 93, 339
BstMBI	GATC	3 cut(s)	211, 515, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 454
BstNSI	RCATGY	2 cut(s)	150, 448
BstSFI	CTRYAG	2 cut(s)	228, 404
BstV1I	GCAGC	3 cut(s)	130, 324, 390
BstX2I	RGATCY	1 cut(s)	515
BstXI	CCANNNNNNTGG	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	515
BsuRI	GGCC	2 cut(s)	191, 419
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	4 cut(s)	148, 253, 408, 455
Cfr13I	GGNCC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	5 cut(s)	147, 316, 445, 484, 639
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	2 cut(s)	432, 583
DpnI	GATC	3 cut(s)	213, 517, 537
DpnII	GATC	3 cut(s)	211, 515, 535
EaeI	YGGCCR	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	5 cut(s)	150, 319, 448, 487, 642
FaiI	YATR	9 cut(s)	56, 131, 148, 230, 317, 324, 446, 485, 640
FatI	CATG	5 cut(s)	146, 315, 444, 483, 638
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	4 cut(s)	144, 313, 404, 568
Fsp4HI	GCNGC	4 cut(s)	144, 313, 404, 568
FspBI	CTAG	1 cut(s)	611
GluI	GCNGC	4 cut(s)	144, 313, 404, 568
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	2 cut(s)	191, 419
Hin1II	CATG	5 cut(s)	150, 319, 448, 487, 642
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	2 cut(s)	287, 599
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	3 cut(s)	225, 355, 442
Hpy188I	TCNGA	3 cut(s)	211, 477, 508
Hpy188III	TCNNGA	2 cut(s)	157, 284
Hpy8I	GTNNAC	3 cut(s)	225, 355, 442
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 454
HpyF3I	CTNAG	2 cut(s)	432, 583
Hsp92II	CATG	5 cut(s)	150, 319, 448, 487, 642
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	211, 515, 535
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	3 cut(s)	130, 324, 390
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	611
MalI	GATC	3 cut(s)	213, 517, 537
MboI	GATC	3 cut(s)	211, 515, 535
MboII	GAAGA	3 cut(s)	66, 69, 177
MflI	RGATCY	1 cut(s)	515
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	3 cut(s)	31, 339, 502
MluNI	TGGCCA	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	7 cut(s)	78, 102, 153, 213, 217, 319, 570
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
MslI	CAYNNNNRTG	1 cut(s)	488
Msp20I	TGGCCA	1 cut(s)	419
MwoI	GCNNNNNNNGC	2 cut(s)	416, 454
NdeII	GATC	3 cut(s)	211, 515, 535
NlaIII	CATG	5 cut(s)	150, 319, 448, 487, 642
NlaIV	GGNNCC	2 cut(s)	192, 627
NspI	RCATGY	2 cut(s)	150, 448
PaeI	GCATGC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	287, 599
PkrI	GCNGC	4 cut(s)	145, 314, 405, 569
PsiI	TTATAA	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	192, 627
PspPI	GGNCC	1 cut(s)	190
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
PstI	CTGCAG	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	515
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	488
SatI	GCNGC	4 cut(s)	144, 313, 404, 568
Sau3AI	GATC	3 cut(s)	211, 515, 535
Sau96I	GGNCC	1 cut(s)	190
ScaI	AGTACT	1 cut(s)	13
SetI	ASST	4 cut(s)	235, 405, 438, 468
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	2 cut(s)	228, 404
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
SphI	GCATGC	1 cut(s)	150
Sse9I	AATT	3 cut(s)	31, 339, 502
SsiI	CCGC	1 cut(s)	567
SspMI	CTAG	1 cut(s)	611
StyI	CCWWGG	1 cut(s)	420
TasI	AATT	3 cut(s)	31, 339, 502
TatI	WGTACW	1 cut(s)	11
TauI	GCSGC	1 cut(s)	570
TfiI	GAWTC	2 cut(s)	287, 599
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	3 cut(s)	143, 312, 403
TspDTI	ATGAA	2 cut(s)	36, 38
TspRI	CASTG	1 cut(s)	312
XceI	RCATGY	2 cut(s)	150, 448
XspI	CTAG	1 cut(s)	611
ZrmI	AGTACT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.