Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004073

Physical Location & Seq

Genomic Coordinates Reverse (-)

24768922 .. 24770351

Gene Structure 1430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G218000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAATTCAACACTTCAACTCCCTCTGCTTCTTCCCCTCCACTTTCAATATCCCAGCTATCTTCTCCGACTGCCTCATTTCCCTCTCCTAATAATTCTCTCCAATTATCTAATTTATCTTCTCCTAATTATGCTGTTAAGAATAATATTAACACTAATGTTAATAATCCAACCTCTCCTTCACCACCACCACCACCACCACCACCACCACCTGTTGTTCTTAGCCCATGTGCTGCCTGCAAGATTCTTCGCCGGAGGTGCGCGGAGAAGTGTGTTTTAGCTCCATATTTCCCTCCTACGGAGCCCCTCAAGTTCACTATTGCACACAGAGTCTTTGGAGCTAGCAACATCATCAAGCTCTTGCAGGAGCTTCCAGAGTCTCACAGAGCAGATGCAGTGAGCAGCATGGTTTATGAAGCTAATGCCAGAATCAGAGACCCAGTGTATGGCTGTGCAGGAGCAATTTGCCAGCTCCAGAAACATGTCAGTGAGCTCCAAGCCCAACTGGCCAAGACACAAGCTGAGCTTCTCAACATGCAATGCCAGCAGGGCAATTTGATTGCTCTAATTTGTATGGACATGACACAATCCAAAGACCCCATTTTGCAGCAGCAGCAGCAACAGTCTTACCTTGACACAAGCTGCTTTCTGGATGAGACCAATTTGGGCACAGCTTGGGAGCCTCTGTGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

232

Amino Acids

25.19

Weight (kDa)

6.28

Isoelectric Point (pI)

72.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07900 AT2G28500
fragaria_vesca	FvH4_3g33510 FvH4_7g20130
malus_domestica	MD01G1130900.v1.1 MD03G1111600.v1.1 MD07G1178900.v1.1 MD11G1125200.v1.1
prunus_persica	Prupe.2G218000_v2.0.a1 Prupe.6G093900_v2.0.a1
pyrus_communis	pycom01g13960 pycom07g17260 pycom11g10580
rosa_chinensis	RchiOBHm_Chr1g0364081 RchiOBHm_Chr5g0060941
rosa_laevigata	RLG00000027518 RLG00000035417
rosa_multiflora	Rmu_sc0000071.1_g000023 Rmu_sc0000420.1_g000003
rosa_roxburghii	Rroxscaffold_1G00019690 Rroxscaffold_4G00292660
rosa_rugosa	Rorug01G0313300 Rorug05G0335400
rosa_samantha	Rh1AG320800 Rh1BG284000 Rh1CG300400 Rh1DG315400 Rh5AG398000 Rh5BG410700 Rh5CG435900 Rh5DG425200
rosa_wichuraiana	Rw1G028440 Rw5G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	446
AccII	CGCG	1 cut(s)	263
AciI	CCGC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	298, 446
AflIII	ACRYGT	1 cut(s)	481
AgsI	TTSAA	3 cut(s)	10, 18, 48
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	3 cut(s)	384, 429, 650
AoxI	GGCC	1 cut(s)	507
ApeKI	GCWGC	7 cut(s)	233, 402, 607, 610, 613, 616, 642
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	174
AsuNHI	GCTAGC	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	671
BalI	TGGCCA	1 cut(s)	509
BanII	GRGCYC	2 cut(s)	306, 495
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	7 cut(s)	220, 414, 619, 622, 625, 628, 629
BcoDI	GTCTC	3 cut(s)	384, 429, 650
BfaI	CTAG	1 cut(s)	342
BglI	GCCNNNNNGGC	2 cut(s)	506, 549
BisI	GCNGC	7 cut(s)	234, 403, 608, 611, 614, 617, 643
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	7 cut(s)	235, 404, 609, 612, 615, 618, 644
BmiI	GGNNCC	2 cut(s)	303, 681
BmrI	ACTGGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	382
BmtI	GCTAGC	1 cut(s)	345
BmuI	ACTGGG	1 cut(s)	434
BpmI	CTGGAG	1 cut(s)	458
Bpu1102I	GCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	293
BsaI	GGTCTC	2 cut(s)	429, 650
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 671
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 446
Bse1I	ACTGG	2 cut(s)	440, 510
Bse3DI	GCAATG	1 cut(s)	545
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	2 cut(s)	298, 446
BseMI	GCAATG	1 cut(s)	545
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	2 cut(s)	440, 510
BseSI	GKGCMC	1 cut(s)	671
BseXI	GCAGC	7 cut(s)	220, 414, 619, 622, 625, 628, 629
BseYI	CCCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	474
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	253
BslI	CCNNNNNNNGG	2 cut(s)	298, 446
BsmAI	GTCTC	3 cut(s)	384, 429, 650
BsnI	GGCC	1 cut(s)	509
Bso31I	GGTCTC	2 cut(s)	429, 650
Bsp1286I	GDGCHC	3 cut(s)	306, 495, 671
Bsp1720I	GCTNAGC	1 cut(s)	522
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	509
BspCNI	CTCAG	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	2 cut(s)	303, 681
BspOI	GCTAGC	1 cut(s)	345
BspTNI	GGTCTC	2 cut(s)	429, 650
BsrDI	GCAATG	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	440, 510
Bst4CI	ACNGT	1 cut(s)	624
BstC8I	GCNNGC	4 cut(s)	238, 343, 470, 545
BstDEI	CTNAG	2 cut(s)	221, 522
BstF5I	GGATG	1 cut(s)	658
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	263
BstMAI	GTCTC	3 cut(s)	384, 429, 650
BstMWI	GCNNNNNNNGC	6 cut(s)	258, 506, 544, 549, 613, 616
BstNSI	RCATGY	2 cut(s)	485, 538
BstSLI	GKGCMC	1 cut(s)	671
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	7 cut(s)	220, 414, 619, 622, 625, 628, 629
BsuRI	GGCC	1 cut(s)	509
BtsCI	GGATG	1 cut(s)	658
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	3 cut(s)	402, 447, 493
Cac8I	GCNNGC	4 cut(s)	238, 343, 470, 545
CfoI	GCGC	1 cut(s)	263
CviAII	CATG	6 cut(s)	228, 406, 482, 535, 580, 693
DdeI	CTNAG	2 cut(s)	221, 522
EaeI	YGGCCR	1 cut(s)	507
Ecl136II	GAGCTC	1 cut(s)	493
Eco24I	GRGCYC	2 cut(s)	306, 495
Eco31I	GGTCTC	2 cut(s)	429, 650
Eco53kI	GAGCTC	1 cut(s)	493
EcoICRI	GAGCTC	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	5
EcoT38I	GRGCYC	2 cut(s)	306, 495
FaeI	CATG	6 cut(s)	231, 409, 485, 538, 583, 696
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FatI	CATG	6 cut(s)	227, 405, 481, 534, 579, 692
Fnu4HI	GCNGC	7 cut(s)	234, 403, 608, 611, 614, 617, 643
FokI	GGATG	1 cut(s)	665
FriOI	GRGCYC	2 cut(s)	306, 495
Fsp4HI	GCNGC	7 cut(s)	234, 403, 608, 611, 614, 617, 643
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	7 cut(s)	234, 403, 608, 611, 614, 617, 643
GsaI	CCCAGC	1 cut(s)	58
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	509
HapII	CCGG	1 cut(s)	253
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	6 cut(s)	231, 409, 485, 538, 583, 696
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	4 cut(s)	244, 330, 377, 429
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	2 cut(s)	315, 690
Hpy188I	TCNGA	2 cut(s)	69, 434
Hpy188III	TCNNGA	3 cut(s)	374, 475, 650
Hpy8I	GTNNAC	2 cut(s)	315, 690
HpyAV	CCTTC	1 cut(s)	189
HpyCH4III	ACNGT	1 cut(s)	624
HpyCH4V	TGCA	7 cut(s)	240, 323, 364, 395, 455, 538, 607
HpyF10VI	GCNNNNNNNGC	6 cut(s)	258, 506, 544, 549, 613, 616
HpyF3I	CTNAG	2 cut(s)	221, 522
Hsp92II	CATG	6 cut(s)	231, 409, 485, 538, 583, 696
HspAI	GCGC	1 cut(s)	261
LmnI	GCTCC	8 cut(s)	286, 301, 338, 367, 458, 477, 498, 679
Lsp1109I	GCAGC	7 cut(s)	220, 414, 619, 622, 625, 628, 629
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	342
MboII	GAAGA	4 cut(s)	24, 54, 111, 239
MhlI	GDGCHC	3 cut(s)	306, 495, 671
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	9 cut(s)	5, 94, 104, 112, 127, 462, 553, 567, 661
MluNI	TGGCCA	1 cut(s)	509
MlyI	GAGTC	2 cut(s)	339, 386
MmeI	TCCRAC	2 cut(s)	92, 194
MnlI	CCTC	9 cut(s)	34, 48, 85, 94, 184, 249, 303, 317, 693
Mox20I	TGGCCA	1 cut(s)	509
MscI	TGGCCA	1 cut(s)	509
MseI	TTAA	3 cut(s)	138, 150, 162
MslI	CAYNNNNRTG	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	509
MspI	CCGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	6 cut(s)	258, 506, 544, 549, 613, 616
NheI	GCTAGC	1 cut(s)	341
NlaIII	CATG	6 cut(s)	231, 409, 485, 538, 583, 696
NlaIV	GGNNCC	2 cut(s)	303, 681
NspI	RCATGY	2 cut(s)	485, 538
PciI	ACATGT	1 cut(s)	481
PfeI	GAWTC	2 cut(s)	244, 429
PflMI	CCANNNNNTGG	1 cut(s)	446
PkrI	GCNGC	7 cut(s)	235, 404, 609, 612, 615, 618, 644
PleI	GAGTC	2 cut(s)	338, 385
PpsI	GAGTC	2 cut(s)	338, 385
PscI	ACATGT	1 cut(s)	481
Psp124BI	GAGCTC	1 cut(s)	495
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	303, 681
RseI	CAYNNNNRTG	1 cut(s)	486
SacI	GAGCTC	1 cut(s)	495
SaqAI	TTAA	3 cut(s)	138, 150, 162
SatI	GCNGC	7 cut(s)	234, 403, 608, 611, 614, 617, 643
SchI	GAGTC	2 cut(s)	339, 386
SduI	GDGCHC	3 cut(s)	306, 495, 671
SfaNI	GCATC	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	9 cut(s)	5, 94, 104, 112, 127, 462, 553, 567, 661
SsiI	CCGC	1 cut(s)	263
SspI	AATATT	1 cut(s)	148
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	624
TasI	AATT	9 cut(s)	5, 94, 104, 112, 127, 462, 553, 567, 661
TfiI	GAWTC	2 cut(s)	244, 429
Tru1I	TTAA	3 cut(s)	138, 150, 162
Tru9I	TTAA	3 cut(s)	138, 150, 162
TscAI	CASTG	3 cut(s)	402, 447, 493
TseI	GCWGC	7 cut(s)	233, 402, 607, 610, 613, 616, 642
TspDTI	ATGAA	1 cut(s)	429
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	3 cut(s)	402, 447, 493
Van91I	CCANNNNNTGG	1 cut(s)	446
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	2 cut(s)	485, 538
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.