Rh5CG435900

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004073
Physical Location & Seq
Reverse (-)
60337951 .. 60340046
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG435900.1

Sequence Viewer

Length: 705 bp
ATGGAGTGCAGTACTGACACTAGCATTAACACAACAAACACTACCTATGCCCCATCAACCCCTTTCTCTCATCAATCTCCTTCTTCTTCCCAATCATCTTCTCCTCCAATTACTCCAACTCAAACTGTTACTCAAGCTCAAACTCAAATTCCACCACCCCAGAATGTTGTGGTCAGTCCTTGTGCTGCTTGCAAGATCTTGAGAAGAAGATGTGCAGAGAAATGTGTGTTGGCTCCTTACTTTCCTCCCTCTGAGCCAGCCAAATTCACCATAGCACATCGAGTCTTTGGTGCTAGCAACATCATCAAGTTCTTGCAGGACCTTCCAGAATCTCAAAGGGCTGATGCAGTGAGCAGCATGGTTTATGAGGCCAGTGCAAGAATCAGAGACCCAGTCTATGGTTGTGCAGGGGCAATCTGCCATCTCCAAAAACAAGTGAGTGACCTTCAAGCACAATTGGCCAAGGCACAAGCTGAGGTTGTCAACATGCAGTGCCAGCAAGCAAACCTTGTAGCACTGCTCATGGAAATGGCAAAACCCGATCACCACGAACAGGGATCCCCGGATCAACAATCACTCGATCATCACAACTTCATCACCAGCCCTCTTCCTCATAGCAATATACTCAATCAGAGCAACTTGAGCTTCCTTGATGATCATAACTCTGCTCTAGGCTCATTCTGGGAATTACCGCTTTGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

234

Amino Acids

25.58

Weight (kDa)

5.95

Isoelectric Point (pI)

67.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 60 - 157 3.7e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 398
AciI CCGC 1 cut(s) 692
AclWI GGATC 3 cut(s) 552, 565, 573
AcoI YGGCCR 1 cut(s) 459
AcsI RAATTY 2 cut(s) 147, 263
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 2 cut(s) 398, 553
AgsI TTSAA 1 cut(s) 449
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 137, 473, 645
AluI AGCT 3 cut(s) 137, 473, 645
Alw26I GTCTC 1 cut(s) 381
AlwI GGATC 3 cut(s) 552, 565, 573
AoxI GGCC 2 cut(s) 369, 459
ApeKI GCWGC 2 cut(s) 185, 354
ApoI RAATTY 2 cut(s) 147, 263
AspS9I GGNCC 1 cut(s) 319
AsuC2I CCSGG 1 cut(s) 563
AsuHPI GGTGA 3 cut(s) 259, 536, 589
AsuNHI GCTAGC 1 cut(s) 293
AvaII GGWCC 1 cut(s) 319
BalI TGGCCA 1 cut(s) 461
BamHI GGATCC 1 cut(s) 557
BbvCI CCTCAGC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 172, 366
BccI CCATC 2 cut(s) 61, 429
BclI TGATCA 1 cut(s) 655
BcnI CCSGG 1 cut(s) 563
BcoDI GTCTC 1 cut(s) 381
BfaI CTAG 3 cut(s) 21, 294, 671
BglII AGATCT 1 cut(s) 195
BisI GCNGC 2 cut(s) 186, 355
BlsI GCNGC 2 cut(s) 187, 356
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 563
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 234, 559
BmrFI CCNGG 1 cut(s) 563
BmrI ACTGGG 1 cut(s) 386
BmsI GCATC 1 cut(s) 334
BmtI GCTAGC 1 cut(s) 297
BmuI ACTGGG 1 cut(s) 386
Bpu10I CCTNAGC 1 cut(s) 474
BpuEI CTTGAG 3 cut(s) 117, 220, 661
BpuMI CCSGG 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 462, 561
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 553
Bse1I ACTGG 2 cut(s) 372, 392
BseDI CCNNGG 2 cut(s) 462, 561
BseLI CCNNNNNNNGG 2 cut(s) 398, 553
BseMII CTCAG 2 cut(s) 243, 465
BseNI ACTGG 2 cut(s) 372, 392
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 172, 366
BsgI GTGCAG 3 cut(s) 28, 234, 426
BshFI GGCC 2 cut(s) 371, 461
BsiSI CCGG 1 cut(s) 563
BslI CCNNNNNNNGG 2 cut(s) 398, 553
BsmAI GTCTC 1 cut(s) 381
BsnI GGCC 2 cut(s) 371, 461
Bso31I GGTCTC 1 cut(s) 381
Bsp143I GATC 6 cut(s) 195, 541, 557, 565, 580, 655
BspACI CCGC 1 cut(s) 692
BspANI GGCC 2 cut(s) 371, 461
BspCNI CTCAG 2 cut(s) 244, 466
BspLI GGNNCC 2 cut(s) 234, 559
BspOI GCTAGC 1 cut(s) 297
BspPI GGATC 3 cut(s) 552, 565, 573
BspTNI GGTCTC 1 cut(s) 381
BsrI ACTGG 2 cut(s) 372, 392
BssECI CCNNGG 2 cut(s) 462, 561
BssMI GATC 6 cut(s) 195, 541, 557, 565, 580, 655
BssT1I CCWWGG 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 612
BstC8I GCNNGC 5 cut(s) 190, 258, 295, 497, 501
BstDEI CTNAG 2 cut(s) 252, 474
BstKTI GATC 6 cut(s) 198, 544, 560, 568, 583, 658
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 6 cut(s) 195, 541, 557, 565, 580, 655
BstMWI GCNNNNNNNGC 3 cut(s) 458, 496, 642
BstNSI RCATGY 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 561
BstV1I GCAGC 2 cut(s) 172, 366
BstX2I RGATCY 2 cut(s) 195, 557
BstYI RGATCY 2 cut(s) 195, 557
BsuRI GGCC 2 cut(s) 371, 461
BtsI GCAGTG 3 cut(s) 354, 497, 515
BtsIMutI CAGTG 4 cut(s) 354, 379, 497, 515
Cac8I GCNNGC 5 cut(s) 190, 258, 295, 497, 501
Cfr13I GGNCC 1 cut(s) 319
Csp6I GTAC 1 cut(s) 12
CviAII CATG 4 cut(s) 358, 487, 523, 702
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 252, 474
DpnI GATC 6 cut(s) 197, 543, 559, 567, 582, 657
DpnII GATC 6 cut(s) 195, 541, 557, 565, 580, 655
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco130I CCWWGG 1 cut(s) 462
Eco31I GGTCTC 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 4 cut(s) 361, 490, 526, 705
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FatI CATG 4 cut(s) 357, 486, 522, 701
FbaI TGATCA 1 cut(s) 655
Fnu4HI GCNGC 2 cut(s) 186, 355
Fsp4HI GCNGC 2 cut(s) 186, 355
FspBI CTAG 3 cut(s) 21, 294, 671
GluI GCNGC 2 cut(s) 186, 355
HaeIII GGCC 2 cut(s) 371, 461
HapII CCGG 1 cut(s) 563
Hin1II CATG 4 cut(s) 361, 490, 526, 705
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 3 cut(s) 282, 329, 381
HpaII CCGG 1 cut(s) 563
HphI GGTGA 3 cut(s) 259, 536, 589
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 3 cut(s) 253, 386, 633
Hpy188III TCNNGA 2 cut(s) 199, 326
Hpy8I GTNNAC 1 cut(s) 484
HpyAV CCTTC 3 cut(s) 90, 332, 455
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 8 cut(s) 9, 192, 215, 316, 347, 377, 407, 490
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 496, 642
HpyF3I CTNAG 2 cut(s) 252, 474
Hsp92II CATG 4 cut(s) 361, 490, 526, 705
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 6 cut(s) 195, 541, 557, 565, 580, 655
LmnI GCTCC 1 cut(s) 238
Lsp1109I GCAGC 2 cut(s) 172, 366
LweI GCATC 1 cut(s) 334
MaeI CTAG 3 cut(s) 21, 294, 671
MaeIII GTNAC 2 cut(s) 127, 440
MalI GATC 6 cut(s) 197, 543, 559, 567, 582, 657
MboI GATC 6 cut(s) 195, 541, 557, 565, 580, 655
MboII GAAGA 6 cut(s) 75, 78, 90, 216, 219, 599
MfeI CAATTG 1 cut(s) 455
MflI RGATCY 2 cut(s) 195, 557
MlsI TGGCCA 1 cut(s) 461
MluCI AATT 5 cut(s) 108, 147, 263, 455, 686
MluNI TGGCCA 1 cut(s) 461
MlyI GAGTC 1 cut(s) 291
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 7 cut(s) 114, 255, 259, 361, 469, 615, 621
Mox20I TGGCCA 1 cut(s) 461
MscI TGGCCA 1 cut(s) 461
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 527
Msp20I TGGCCA 1 cut(s) 461
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 1 cut(s) 563
MunI CAATTG 1 cut(s) 455
MwoI GCNNNNNNNGC 3 cut(s) 458, 496, 642
NciI CCSGG 1 cut(s) 563
NdeII GATC 6 cut(s) 195, 541, 557, 565, 580, 655
NheI GCTAGC 1 cut(s) 293
NlaIII CATG 4 cut(s) 361, 490, 526, 705
NlaIV GGNNCC 2 cut(s) 234, 559
NmuCI GTSAC 1 cut(s) 440
NspI RCATGY 1 cut(s) 490
PfeI GAWTC 2 cut(s) 329, 381
PflFI GACNNNGTC 1 cut(s) 392
PflMI CCANNNNNTGG 1 cut(s) 398
PkrI GCNGC 2 cut(s) 187, 356
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PpuMI RGGWCCY 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 319
PspN4I GGNNCC 2 cut(s) 234, 559
PspPI GGNCC 1 cut(s) 319
PspPPI RGGWCCY 1 cut(s) 319
PsuI RGATCY 2 cut(s) 195, 557
PsyI GACNNNGTC 1 cut(s) 392
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 527
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 2 cut(s) 186, 355
Sau3AI GATC 6 cut(s) 195, 541, 557, 565, 580, 655
Sau96I GGNCC 1 cut(s) 319
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 1 cut(s) 291
ScrFI CCNGG 1 cut(s) 563
SetI ASST 8 cut(s) 47, 139, 324, 447, 475, 480, 510, 647
SfaNI GCATC 1 cut(s) 334
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 3 cut(s) 132, 199, 640
SmoI CTYRAG 3 cut(s) 132, 199, 640
Sse9I AATT 5 cut(s) 108, 147, 263, 455, 686
SsiI CCGC 1 cut(s) 692
SspMI CTAG 3 cut(s) 21, 294, 671
StyD4I CCNGG 1 cut(s) 561
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 280, 579
TasI AATT 5 cut(s) 108, 147, 263, 455, 686
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 2 cut(s) 329, 381
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 4 cut(s) 354, 379, 497, 522
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 2 cut(s) 185, 354
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 1 cut(s) 583
TspRI CASTG 4 cut(s) 354, 379, 497, 522
Tth111I GACNNNGTC 1 cut(s) 392
Van91I CCANNNNNTGG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 2 cut(s) 147, 263
XceI RCATGY 1 cut(s) 490
XspI CTAG 3 cut(s) 21, 294, 671
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.