MD11G1125200.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0004073
Physical Location & Seq
Forward (+)
11533473 .. 11535274
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1125200.v1.1.491

Sequence Viewer

Length: 639 bp
ATGGAGTGCAGTACTGAAACAATGAACACAAATTACACAACCACTTCATCAACTATGTCTCAATCTCCTCCTTCTTCTTCACCATCGTCTCCTCCAACCCCAACTCCCACTCCATCTCCACCAGTTGTTATAAGTCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCAGACAAGTGCGTTTTGGCCCCTTACTTTCCTCCCTCTGAGCCAGTCAAGTTTACTATAGCTCATCGTGTCTTTGGGGCAAGCAATATTATCAAGTTCTTGCAGGAACTTCCAGAATCTCAAAGAGCCGATGCAGTGAGCAGCATGGTTTATGAGGCAAGTGCAAGAATTAGAGACCCAGTTTATGGTTGTGCTGGAGCAATCTGCCACCTGCAGAAGCAAGTGAATGAGCTGCAGGCACAACTGGCCAAGGCACAGGCTGAGCTTGTCAACATGCAATGCCAGCAAGCCAACCTTGTGGCTCTGATTTGGGAAATGTCACACCCTAATTCCGAGCAAGGATCTCCTCCACAATCACTTGATGACAACTTCGTCGCCACCAATCCTCACGGCGGCAACCAGACCAACTTAGGCTTCCTTGATGATTCCACCACTCTAGGCTCATTGTGGGAACCACTTTGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

213

Amino Acids

22.97

Weight (kDa)

5.31

Isoelectric Point (pI)

72.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 46 - 143 4e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 131
AarI CACCTGC 1 cut(s) 390
AasI GACNNNNNNGTC 1 cut(s) 542
Acc36I ACCTGC 1 cut(s) 390
AccB7I CCANNNNNTGG 1 cut(s) 356
AciI CCGC 1 cut(s) 564
AclWI GGATC 1 cut(s) 520
AcoI YGGCCR 1 cut(s) 417
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 2 cut(s) 356, 563
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AluBI AGCT 3 cut(s) 233, 403, 436
AluI AGCT 3 cut(s) 233, 403, 436
Alw26I GTCTC 3 cut(s) 63, 93, 339
AlwI GGATC 1 cut(s) 520
AoxI GGCC 2 cut(s) 189, 417
ApeKI GCWGC 3 cut(s) 143, 312, 403
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 72
BalI TGGCCA 1 cut(s) 419
BbvI GCAGC 3 cut(s) 130, 324, 390
BccI CCATC 2 cut(s) 91, 121
BceAI ACGGC 1 cut(s) 577
BcoDI GTCTC 3 cut(s) 63, 93, 339
BfaI CTAG 1 cut(s) 608
BfmI CTRYAG 3 cut(s) 228, 383, 404
BfuAI ACCTGC 1 cut(s) 390
BisI GCNGC 4 cut(s) 144, 313, 404, 565
BlpI GCTNAGC 1 cut(s) 432
BlsI GCNGC 4 cut(s) 145, 314, 405, 566
BmcAI AGTACT 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 192, 624
BmrI ACTGGG 1 cut(s) 344
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 344
BpmI CTGGAG 1 cut(s) 387
Bpu1102I GCTNAGC 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 420
BsaXI ACNNNNNCTCC 8 cut(s) 88, 94, 100, 118, 124, 130, 154, 184
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 563
Bse1I ACTGG 4 cut(s) 122, 215, 350, 420
Bse3DI GCAATG 1 cut(s) 455
BseDI CCNNGG 1 cut(s) 420
BseLI CCNNNNNNNGG 2 cut(s) 356, 563
BseMI GCAATG 1 cut(s) 455
BseMII CTCAG 2 cut(s) 201, 423
BseNI ACTGG 4 cut(s) 122, 215, 350, 420
BseRI GAGGAG 4 cut(s) 57, 81, 175, 507
BseXI GCAGC 3 cut(s) 130, 324, 390
BsgI GTGCAG 2 cut(s) 28, 192
BshFI GGCC 2 cut(s) 191, 419
BslI CCNNNNNNNGG 2 cut(s) 356, 563
BsmAI GTCTC 3 cut(s) 63, 93, 339
BsmBI CGTCTC 1 cut(s) 93
BsnI GGCC 2 cut(s) 191, 419
Bso31I GGTCTC 1 cut(s) 339
Bsp143I GATC 1 cut(s) 512
Bsp1720I GCTNAGC 1 cut(s) 432
BspACI CCGC 1 cut(s) 564
BspANI GGCC 2 cut(s) 191, 419
BspCNI CTCAG 2 cut(s) 202, 424
BspLI GGNNCC 2 cut(s) 192, 624
BspMAI CTGCAG 2 cut(s) 387, 408
BspMI ACCTGC 1 cut(s) 390
BspPI GGATC 1 cut(s) 520
BspTNI GGTCTC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 455
BsrI ACTGG 4 cut(s) 122, 215, 350, 420
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 1 cut(s) 512
BssT1I CCWWGG 1 cut(s) 420
BstC8I GCNNGC 5 cut(s) 148, 253, 408, 455, 459
BstDEI CTNAG 3 cut(s) 210, 432, 580
BstKTI GATC 1 cut(s) 515
BstMAI GTCTC 3 cut(s) 63, 93, 339
BstMBI GATC 1 cut(s) 512
BstMWI GCNNNNNNNGC 2 cut(s) 416, 454
BstNSI RCATGY 2 cut(s) 150, 448
BstSFI CTRYAG 3 cut(s) 228, 383, 404
BstV1I GCAGC 3 cut(s) 130, 324, 390
BstX2I RGATCY 1 cut(s) 512
BstXI CCANNNNNNTGG 1 cut(s) 469
BstYI RGATCY 1 cut(s) 512
BsuRI GGCC 2 cut(s) 191, 419
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 390
Cac8I GCNNGC 5 cut(s) 148, 253, 408, 455, 459
Cfr13I GGNCC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 12
CviAII CATG 4 cut(s) 147, 316, 445, 636
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 3 cut(s) 210, 432, 580
DpnI GATC 1 cut(s) 514
DpnII GATC 1 cut(s) 512
DrdI GACNNNNNNGTC 1 cut(s) 542
DseDI GACNNNNNNGTC 1 cut(s) 542
EaeI YGGCCR 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 420
Eco31I GGTCTC 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 4 cut(s) 150, 319, 448, 639
FaiI YATR 9 cut(s) 56, 131, 148, 230, 317, 324, 357, 446, 637
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FatI CATG 4 cut(s) 146, 315, 444, 635
Fnu4HI GCNGC 4 cut(s) 144, 313, 404, 565
Fsp4HI GCNGC 4 cut(s) 144, 313, 404, 565
FspBI CTAG 1 cut(s) 608
GluI GCNGC 4 cut(s) 144, 313, 404, 565
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 2 cut(s) 191, 419
Hin1II CATG 4 cut(s) 150, 319, 448, 639
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 2 cut(s) 287, 596
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 225, 442
Hpy188I TCNGA 3 cut(s) 211, 477, 505
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 2 cut(s) 225, 442
Hpy99I CGWCG 1 cut(s) 548
HpyAV CCTTC 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 454
HpyF3I CTNAG 3 cut(s) 210, 432, 580
Hsp92II CATG 4 cut(s) 150, 319, 448, 639
Kzo9I GATC 1 cut(s) 512
LmnI GCTCC 1 cut(s) 368
Lsp1109I GCAGC 3 cut(s) 130, 324, 390
LweI GCATC 1 cut(s) 292
MaeI CTAG 1 cut(s) 608
MaeIII GTNAC 1 cut(s) 489
MalI GATC 1 cut(s) 514
MboI GATC 1 cut(s) 512
MboII GAAGA 3 cut(s) 66, 69, 177
MflI RGATCY 1 cut(s) 512
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 3 cut(s) 31, 339, 499
MluNI TGGCCA 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 8 cut(s) 78, 102, 153, 213, 217, 319, 528, 567
Mox20I TGGCCA 1 cut(s) 419
MscI TGGCCA 1 cut(s) 419
Msp20I TGGCCA 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 416, 454
NdeII GATC 1 cut(s) 512
NlaIII CATG 4 cut(s) 150, 319, 448, 639
NlaIV GGNNCC 2 cut(s) 192, 624
NmuCI GTSAC 1 cut(s) 489
NspI RCATGY 2 cut(s) 150, 448
PaeI GCATGC 1 cut(s) 150
PaqCI CACCTGC 1 cut(s) 390
PfeI GAWTC 2 cut(s) 287, 596
PflMI CCANNNNNTGG 1 cut(s) 356
PkrI GCNGC 4 cut(s) 145, 314, 405, 566
PsiI TTATAA 1 cut(s) 131
PspN4I GGNNCC 2 cut(s) 192, 624
PspPI GGNCC 1 cut(s) 190
PsrI GAACNNNNNNTAC 2 cut(s) 17, 49
PstI CTGCAG 2 cut(s) 387, 408
PsuI RGATCY 1 cut(s) 512
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SatI GCNGC 4 cut(s) 144, 313, 404, 565
Sau3AI GATC 1 cut(s) 512
Sau96I GGNCC 1 cut(s) 190
ScaI AGTACT 1 cut(s) 13
SetI ASST 5 cut(s) 235, 384, 405, 438, 468
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 3 cut(s) 228, 383, 404
SphI GCATGC 1 cut(s) 150
Sse9I AATT 3 cut(s) 31, 339, 499
SsiI CCGC 1 cut(s) 564
SspI AATATT 1 cut(s) 259
SspMI CTAG 1 cut(s) 608
StyI CCWWGG 1 cut(s) 420
TasI AATT 3 cut(s) 31, 339, 499
TatI WGTACW 1 cut(s) 11
TauI GCSGC 1 cut(s) 567
TfiI GAWTC 2 cut(s) 287, 596
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 489
TseI GCWGC 3 cut(s) 143, 312, 403
Tsp45I GTSAC 1 cut(s) 489
TspDTI ATGAA 2 cut(s) 36, 38
TspRI CASTG 1 cut(s) 312
Van91I CCANNNNNTGG 1 cut(s) 356
XceI RCATGY 2 cut(s) 150, 448
XspI CTAG 1 cut(s) 608
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.