Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004073

Physical Location & Seq

Genomic Coordinates Reverse (-)

14272794 .. 14273881

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGAATTCATTGCCAAAACTACTACCACTCCTACAAGTCCACCTCCATTCTCCCACTCTCTGTCTTCCTCCATTTCTTCTCCCAGTACTGCACCATTTCCATCCCCTAACTCTCATCACTTATCTAATTATTCTTCTCCTCATGCTGCTAATAGTAATATTGCTACTAATCCATTTCCGACCTATCCTTCACCGCCGCCACCACCACCTGTGGTTCTCAGCCCATGCGCCGCCTGCAAGATTCTTCGCCGCCGGTGTGTGGAGAAGTGCGTTTTAGCGCCATACTTCCCTCCTACTGAGCCCCTTAAGTTCACTATTGCCCACAGAGTCTTTGGAGCTAGCAACATCATCAAGCTCTTGCAGGAAATTCCAGAGTCTCACAGAGCAGATGCAGTGAGCAGCATGGTTTACGAAGCCAATGCCAGAATTCGCGACCCGGTTTATGGCTGCGCCGGAGCAATTTGTCAGCTCCAGAAACAAGTCGGTGAGCTCCAAGCCCAACTGGCCAAGGCACAGGCAGAGCTAGTGAACATGCAATGCGAGCAAGGCAATCTGATTGCCCTAATTTGCATGGACATGACACAGTCTAAAGAACAAGCCATTTTGCAGCAGCAACAGTCTAATTGCAATGACACAAGCTGTTTTCCGGATGAAAACAATTTGGGCACGACTTGGGAGCCTCTCTGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

231

Amino Acids

25.06

Weight (kDa)

6.29

Isoelectric Point (pI)

70.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07900 AT2G28500
fragaria_vesca	FvH4_3g33510 FvH4_7g20130
malus_domestica	MD01G1130900.v1.1 MD03G1111600.v1.1 MD07G1178900.v1.1 MD11G1125200.v1.1
prunus_persica	Prupe.2G218000_v2.0.a1 Prupe.6G093900_v2.0.a1
pyrus_communis	pycom01g13960 pycom07g17260 pycom11g10580
rosa_chinensis	RchiOBHm_Chr1g0364081 RchiOBHm_Chr5g0060941
rosa_laevigata	RLG00000027518 RLG00000035417
rosa_multiflora	Rmu_sc0000071.1_g000023 Rmu_sc0000420.1_g000003
rosa_roxburghii	Rroxscaffold_1G00019690 Rroxscaffold_4G00292660
rosa_rugosa	Rorug01G0313300 Rorug05G0335400
rosa_samantha	Rh1AG320800 Rh1BG284000 Rh1CG300400 Rh1DG315400 Rh5AG398000 Rh5BG410700 Rh5CG435900 Rh5DG425200
rosa_wichuraiana	Rw1G028440 Rw5G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	432
AccIII	TCCGGA	1 cut(s)	646
AciI	CCGC	4 cut(s)	194, 197, 231, 250
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	3 cut(s)	5, 366, 426
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	2 cut(s)	259, 443
AflII	CTTAAG	1 cut(s)	305
AluBI	AGCT	6 cut(s)	338, 355, 469, 490, 523, 639
AluI	AGCT	6 cut(s)	338, 355, 469, 490, 523, 639
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	1 cut(s)	381
Aor13HI	TCCGGA	1 cut(s)	646
AoxI	GGCC	1 cut(s)	504
ApeKI	GCWGC	5 cut(s)	146, 399, 447, 607, 610
ApoI	RAATTY	3 cut(s)	5, 366, 426
AspLEI	GCGC	3 cut(s)	230, 280, 452
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	2 cut(s)	183, 497
AsuNHI	GCTAGC	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	668
BalI	TGGCCA	1 cut(s)	506
BanII	GRGCYC	2 cut(s)	303, 492
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	5 cut(s)	133, 411, 434, 619, 622
BccI	CCATC	1 cut(s)	109
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	2 cut(s)	339, 524
BfoI	RGCGCY	1 cut(s)	281
BfrI	CTTAAG	1 cut(s)	305
BglI	GCCNNNNNGGC	1 cut(s)	503
BisI	GCNGC	8 cut(s)	147, 197, 231, 250, 400, 448, 608, 611
BlsI	GCNGC	8 cut(s)	148, 198, 232, 251, 401, 449, 609, 612
BmcAI	AGTACT	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	437
BmiI	GGNNCC	1 cut(s)	678
BmrFI	CCNGG	1 cut(s)	437
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	379
BmtI	GCTAGC	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	507
BsaWI	WCCGGW	1 cut(s)	646
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 443
Bse118I	RCCGGY	1 cut(s)	252
Bse1I	ACTGG	2 cut(s)	84, 507
Bse3DI	GCAATG	3 cut(s)	9, 542, 634
BseAI	TCCGGA	1 cut(s)	646
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	2 cut(s)	101, 655
BseLI	CCNNNNNNNGG	2 cut(s)	259, 443
BseMI	GCAATG	3 cut(s)	9, 542, 634
BseMII	CTCAG	2 cut(s)	232, 288
BseNI	ACTGG	2 cut(s)	84, 507
BseRI	GAGGAG	1 cut(s)	129
BseSI	GKGCMC	1 cut(s)	668
BseXI	GCAGC	5 cut(s)	133, 411, 434, 619, 622
BsgI	GTGCAG	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	1 cut(s)	506
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	4 cut(s)	253, 437, 453, 647
BslI	CCNNNNNNNGG	2 cut(s)	259, 443
BsmAI	GTCTC	1 cut(s)	381
BsnI	GGCC	1 cut(s)	506
Bsp1286I	GDGCHC	3 cut(s)	303, 492, 668
Bsp13I	TCCGGA	1 cut(s)	646
Bsp68I	TCGCGA	1 cut(s)	432
BspACI	CCGC	4 cut(s)	194, 197, 231, 250
BspANI	GGCC	1 cut(s)	506
BspCNI	CTCAG	2 cut(s)	231, 289
BspEI	TCCGGA	1 cut(s)	646
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	1 cut(s)	678
BspOI	GCTAGC	1 cut(s)	342
BspTI	CTTAAG	1 cut(s)	305
BsrDI	GCAATG	3 cut(s)	9, 542, 634
BsrFI	RCCGGY	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	84, 507
BssAI	RCCGGY	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	585, 618
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	3 cut(s)	235, 340, 542
BstDEI	CTNAG	2 cut(s)	218, 297
BstF5I	GGATG	2 cut(s)	101, 655
BstFNI	CGCG	1 cut(s)	432
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	3 cut(s)	230, 280, 452
BstMAI	GTCTC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	4 cut(s)	234, 503, 541, 546
BstNSI	RCATGY	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	435
BstSLI	GKGCMC	1 cut(s)	668
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	5 cut(s)	133, 411, 434, 619, 622
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	506
BtsCI	GGATG	2 cut(s)	101, 655
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	399
BtuMI	TCGCGA	1 cut(s)	432
Cac8I	GCNNGC	3 cut(s)	235, 340, 542
CfoI	GCGC	3 cut(s)	230, 280, 452
Cfr10I	RCCGGY	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	7 cut(s)	143, 225, 403, 532, 571, 577, 690
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	2 cut(s)	218, 297
EaeI	YGGCCR	1 cut(s)	504
Ecl136II	GAGCTC	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	2 cut(s)	303, 492
Eco53kI	GAGCTC	1 cut(s)	490
EcoICRI	GAGCTC	1 cut(s)	490
EcoRI	GAATTC	2 cut(s)	5, 426
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	2 cut(s)	303, 492
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	7 cut(s)	146, 228, 406, 535, 574, 580, 693
FaiI	YATR	9 cut(s)	144, 226, 283, 404, 444, 533, 572, 578, 691
FatI	CATG	7 cut(s)	142, 224, 402, 531, 570, 576, 689
Fnu4HI	GCNGC	8 cut(s)	147, 197, 231, 250, 400, 448, 608, 611
FokI	GGATG	2 cut(s)	88, 662
FriOI	GRGCYC	2 cut(s)	303, 492
Fsp4HI	GCNGC	8 cut(s)	147, 197, 231, 250, 400, 448, 608, 611
FspBI	CTAG	2 cut(s)	339, 524
GlaI	GCGC	3 cut(s)	229, 279, 451
GluI	GCNGC	8 cut(s)	147, 197, 231, 250, 400, 448, 608, 611
GsuI	CTGGAG	1 cut(s)	455
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	506
HapII	CCGG	4 cut(s)	253, 437, 453, 647
HhaI	GCGC	3 cut(s)	230, 280, 452
Hin1II	CATG	7 cut(s)	146, 228, 406, 535, 574, 580, 693
Hin6I	GCGC	3 cut(s)	228, 278, 450
HinP1I	GCGC	3 cut(s)	228, 278, 450
HinfI	GANTC	3 cut(s)	241, 327, 374
HpaII	CCGG	4 cut(s)	253, 437, 453, 647
HphI	GGTGA	2 cut(s)	183, 497
Hpy166II	GTNNAC	4 cut(s)	41, 312, 409, 529
Hpy188I	TCNGA	2 cut(s)	180, 555
Hpy188III	TCNNGA	5 cut(s)	371, 431, 472, 647, 685
Hpy8I	GTNNAC	4 cut(s)	41, 312, 409, 529
HpyAV	CCTTC	1 cut(s)	198
HpyCH4III	ACNGT	2 cut(s)	585, 618
HpyCH4V	TGCA	8 cut(s)	92, 237, 361, 392, 535, 570, 607, 627
HpyF10VI	GCNNNNNNNGC	4 cut(s)	234, 503, 541, 546
HpyF3I	CTNAG	2 cut(s)	218, 297
Hsp92II	CATG	7 cut(s)	146, 228, 406, 535, 574, 580, 693
HspAI	GCGC	3 cut(s)	228, 278, 450
Kpn2I	TCCGGA	1 cut(s)	646
LmnI	GCTCC	5 cut(s)	335, 455, 474, 495, 676
Lsp1109I	GCAGC	5 cut(s)	133, 411, 434, 619, 622
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	2 cut(s)	339, 524
MboII	GAAGA	4 cut(s)	57, 69, 126, 236
MhlI	GDGCHC	3 cut(s)	303, 492, 668
MlsI	TGGCCA	1 cut(s)	506
MluCI	AATT	8 cut(s)	5, 127, 366, 426, 459, 564, 622, 658
MluNI	TGGCCA	1 cut(s)	506
MlyI	GAGTC	2 cut(s)	336, 383
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	5 cut(s)	54, 79, 150, 300, 690
Mox20I	TGGCCA	1 cut(s)	506
MroI	TCCGGA	1 cut(s)	646
MscI	TGGCCA	1 cut(s)	506
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	575
Msp20I	TGGCCA	1 cut(s)	506
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	4 cut(s)	253, 437, 453, 647
MspR9I	CCNGG	1 cut(s)	437
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	4 cut(s)	234, 503, 541, 546
NciI	CCSGG	1 cut(s)	437
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	7 cut(s)	146, 228, 406, 535, 574, 580, 693
NlaIV	GGNNCC	1 cut(s)	678
NruI	TCGCGA	1 cut(s)	432
NspI	RCATGY	1 cut(s)	535
PfeI	GAWTC	1 cut(s)	241
PflFI	GACNNNGTC	1 cut(s)	583
PkrI	GCNGC	8 cut(s)	148, 198, 232, 251, 401, 449, 609, 612
PleI	GAGTC	2 cut(s)	335, 382
PpsI	GAGTC	2 cut(s)	335, 382
Psp124BI	GAGCTC	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	678
PsyI	GACNNNGTC	1 cut(s)	583
RruI	TCGCGA	1 cut(s)	432
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	575
SacI	GAGCTC	1 cut(s)	492
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	8 cut(s)	147, 197, 231, 250, 400, 448, 608, 611
ScaI	AGTACT	1 cut(s)	88
SchI	GAGTC	2 cut(s)	336, 383
ScrFI	CCNGG	1 cut(s)	437
SduI	GDGCHC	3 cut(s)	303, 492, 668
SetI	ASST	9 cut(s)	46, 185, 211, 340, 357, 471, 492, 525, 641
SfaNI	GCATC	1 cut(s)	379
SgrAI	CRCCGGYG	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	8 cut(s)	5, 127, 366, 426, 459, 564, 622, 658
SsiI	CCGC	4 cut(s)	194, 197, 231, 250
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	2 cut(s)	339, 524
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	435
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	2 cut(s)	585, 618
TasI	AATT	8 cut(s)	5, 127, 366, 426, 459, 564, 622, 658
TatI	WGTACW	1 cut(s)	86
TauI	GCSGC	3 cut(s)	199, 233, 252
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	5 cut(s)	146, 399, 447, 607, 610
TspDTI	ATGAA	1 cut(s)	666
TspRI	CASTG	1 cut(s)	399
Tth111I	GACNNNGTC	1 cut(s)	583
Vha464I	CTTAAG	1 cut(s)	305
XapI	RAATTY	3 cut(s)	5, 366, 426
XceI	RCATGY	1 cut(s)	535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XspI	CTAG	2 cut(s)	339, 524
ZrmI	AGTACT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.