Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004073

Physical Location & Seq

Genomic Coordinates Forward (+)

6478501 .. 6480396

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G093900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAATGCAGTAATGAGACAATGAACACAAACTACACAACCACCTCCTCAACCCCTCTGTCTCAGTCTCCTTCTTCTTCACCATCCTCTCCTCCTCCTCCTCTGCCTCCTACTCCAACTCCAAACCCACCTGTGGTTATAAGTCCTTGTGCTGCATGCAAGATCTTGAGGAGAAGATGTGCAGAAAAATGTGTCTTGGCACCTTACTTTCCTCCCACTGAGCCAGCCAAGTTCACTATTGCTCATCGTGTCTTTGGGGCTAGTAATATCATAAAGTTCTTGCAGGAACTTCCAGAATCTCAAAGAGCTGATGCAGTGAGCAGCATGGTTTATGAGGCCAGTGCAAGAATTAGAGACCCAGTTTATGGGTGTGCCGGGGCAATCTGCCACCTCCAGAAACAAGTGAATGAGCTGCAAGCACAATTAGCCAAGGCACAAGCTGAGCTTGTCAACATGCAATGCCAGCAAGCCAATCTTGTGGCACTAATTTGCATGGAGATGACACAATCTAATGATCAGGGCTCTCCTCAGCAATCACTTGATCACAACTTCATCACCAGTTCTCATGGCAGCAACCAGGGTAACATAAGCTTCCTTGATGACACCACCACTCTAGGCTCATTGTGGGAACCACTTTGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

215

Amino Acids

23.22

Weight (kDa)

5.52

Isoelectric Point (pI)

71.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07900 AT2G28500
fragaria_vesca	FvH4_3g33510 FvH4_7g20130
malus_domestica	MD01G1130900.v1.1 MD03G1111600.v1.1 MD07G1178900.v1.1 MD11G1125200.v1.1
prunus_persica	Prupe.2G218000_v2.0.a1 Prupe.6G093900_v2.0.a1
pyrus_communis	pycom01g13960 pycom07g17260 pycom11g10580
rosa_chinensis	RchiOBHm_Chr1g0364081 RchiOBHm_Chr5g0060941
rosa_laevigata	RLG00000027518 RLG00000035417
rosa_multiflora	Rmu_sc0000071.1_g000023 Rmu_sc0000420.1_g000003
rosa_roxburghii	Rroxscaffold_1G00019690 Rroxscaffold_4G00292660
rosa_rugosa	Rorug01G0313300 Rorug05G0335400
rosa_samantha	Rh1AG320800 Rh1BG284000 Rh1CG300400 Rh1DG315400 Rh5AG398000 Rh5BG410700 Rh5CG435900 Rh5DG425200
rosa_wichuraiana	Rw1G028440 Rw5G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	133, 365
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	5 cut(s)	308, 412, 440, 445, 591
AluI	AGCT	5 cut(s)	308, 412, 440, 445, 591
Alw26I	GTCTC	4 cut(s)	11, 66, 72, 348
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	4 cut(s)	152, 321, 412, 570
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	72, 547
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	524
BbvCI	CCTCAGC	1 cut(s)	528
BbvI	GCAGC	4 cut(s)	139, 333, 399, 582
BccI	CCATC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	578
BclI	TGATCA	2 cut(s)	514, 541
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	4 cut(s)	11, 66, 72, 348
BfaI	CTAG	2 cut(s)	261, 614
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	4 cut(s)	153, 322, 413, 571
BlpI	GCTNAGC	1 cut(s)	441
BlsI	GCNGC	4 cut(s)	154, 323, 414, 572
Bme1390I	CCNGG	2 cut(s)	376, 578
BmiI	GGNNCC	2 cut(s)	201, 630
BmrFI	CCNGG	2 cut(s)	376, 578
BmrI	ACTGGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	528
Bpu1102I	GCTNAGC	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	187
BpuMI	CCSGG	1 cut(s)	376
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	3 cut(s)	375, 429, 577
BsaXI	ACNNNNNCTCC	4 cut(s)	103, 133, 163, 193
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 365
Bse1I	ACTGG	3 cut(s)	339, 359, 558
Bse3DI	GCAATG	1 cut(s)	464
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	3 cut(s)	375, 429, 577
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	2 cut(s)	133, 365
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	4 cut(s)	77, 210, 432, 542
BseNI	ACTGG	3 cut(s)	339, 359, 558
BseRI	GAGGAG	7 cut(s)	37, 81, 84, 87, 90, 184, 516
BseXI	GCAGC	4 cut(s)	139, 333, 399, 582
BsgI	GTGCAG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	2 cut(s)	133, 365
BsmAI	GTCTC	4 cut(s)	11, 66, 72, 348
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	338
Bso31I	GGTCTC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	524
Bsp143I	GATC	3 cut(s)	162, 514, 541
Bsp1720I	GCTNAGC	1 cut(s)	441
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	4 cut(s)	76, 211, 433, 541
BspLI	GGNNCC	2 cut(s)	201, 630
BspT107I	GGYRCC	1 cut(s)	199
BspTNI	GGTCTC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	464
BsrI	ACTGG	3 cut(s)	339, 359, 558
BssECI	CCNNGG	3 cut(s)	375, 429, 577
BssMI	GATC	3 cut(s)	162, 514, 541
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	578
BstC8I	GCNNGC	5 cut(s)	157, 225, 417, 464, 468
BstDEI	CTNAG	4 cut(s)	63, 219, 441, 528
BstF5I	GGATG	1 cut(s)	83
BstKTI	GATC	3 cut(s)	165, 517, 544
BstMAI	GTCTC	4 cut(s)	11, 66, 72, 348
BstMBI	GATC	3 cut(s)	162, 514, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 463
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	2 cut(s)	159, 457
BstSCI	CCNGG	2 cut(s)	374, 576
BstV1I	GCAGC	4 cut(s)	139, 333, 399, 582
BstX2I	RGATCY	1 cut(s)	162
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	3 cut(s)	216, 321, 346
Cac8I	GCNNGC	5 cut(s)	157, 225, 417, 464, 468
CviAII	CATG	6 cut(s)	156, 325, 454, 493, 566, 642
DdeI	CTNAG	4 cut(s)	63, 219, 441, 528
DpnI	GATC	3 cut(s)	164, 516, 543
DpnII	GATC	3 cut(s)	162, 514, 541
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	524
Eco31I	GGTCTC	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	576
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	524
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	6 cut(s)	159, 328, 457, 496, 569, 645
FalI	AAGNNNNNCTT	4 cut(s)	429, 461, 459, 491
FatI	CATG	6 cut(s)	155, 324, 453, 492, 565, 641
FbaI	TGATCA	2 cut(s)	514, 541
Fnu4HI	GCNGC	4 cut(s)	153, 322, 413, 571
FokI	GGATG	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	524
Fsp4HI	GCNGC	4 cut(s)	153, 322, 413, 571
FspBI	CTAG	2 cut(s)	261, 614
GluI	GCNGC	4 cut(s)	153, 322, 413, 571
GsuI	CTGGAG	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	1 cut(s)	375
Hin1II	CATG	6 cut(s)	159, 328, 457, 496, 569, 645
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	589
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	2 cut(s)	72, 547
Hpy166II	GTNNAC	2 cut(s)	234, 451
Hpy188III	TCNNGA	3 cut(s)	166, 293, 394
Hpy8I	GTNNAC	2 cut(s)	234, 451
HpyAV	CCTTC	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 463
HpyF3I	CTNAG	4 cut(s)	63, 219, 441, 528
Hsp92II	CATG	6 cut(s)	159, 328, 457, 496, 569, 645
Ksp22I	TGATCA	2 cut(s)	514, 541
Kzo9I	GATC	3 cut(s)	162, 514, 541
Lsp1109I	GCAGC	4 cut(s)	139, 333, 399, 582
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	261, 614
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	3 cut(s)	164, 516, 543
MboI	GATC	3 cut(s)	162, 514, 541
MboII	GAAGA	3 cut(s)	66, 69, 186
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	524
MluCI	AATT	3 cut(s)	348, 422, 486
MmeI	TCCRAC	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	497
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	2 cut(s)	376, 578
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	578
MwoI	GCNNNNNNNGC	2 cut(s)	425, 463
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	3 cut(s)	162, 514, 541
NlaIII	CATG	6 cut(s)	159, 328, 457, 496, 569, 645
NlaIV	GGNNCC	2 cut(s)	201, 630
NspI	RCATGY	2 cut(s)	159, 457
PaeI	GCATGC	1 cut(s)	159
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	365
PkrI	GCNGC	4 cut(s)	154, 323, 414, 572
PsiI	TTATAA	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	2 cut(s)	201, 630
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
PsuI	RGATCY	1 cut(s)	162
RseI	CAYNNNNRTG	1 cut(s)	497
SatI	GCNGC	4 cut(s)	153, 322, 413, 571
Sau3AI	GATC	3 cut(s)	162, 514, 541
ScrFI	CCNGG	2 cut(s)	376, 578
SduI	GDGCHC	1 cut(s)	524
SetI	ASST	9 cut(s)	47, 133, 205, 310, 393, 414, 442, 447, 593
SfaNI	GCATC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
SphI	GCATGC	1 cut(s)	159
Sse9I	AATT	3 cut(s)	348, 422, 486
SspMI	CTAG	2 cut(s)	261, 614
StyD4I	CCNGG	2 cut(s)	374, 576
StyI	CCWWGG	1 cut(s)	429
TasI	AATT	3 cut(s)	348, 422, 486
TfiI	GAWTC	1 cut(s)	296
TscAI	CASTG	3 cut(s)	223, 321, 346
TseI	GCWGC	4 cut(s)	152, 321, 412, 570
TspDTI	ATGAA	2 cut(s)	38, 541
TspRI	CASTG	3 cut(s)	223, 321, 346
Van91I	CCANNNNNTGG	1 cut(s)	365
XceI	RCATGY	2 cut(s)	159, 457
XspI	CTAG	2 cut(s)	261, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.