Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004073

Physical Location & Seq

Genomic Coordinates Reverse (-)

25861668 .. 25862921

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1178900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAGTCCACCTCCATTCTCCTACTCTCCATCTTCCTCTCCTTCTTCTCCCATTACTTCATCATTTCCCTCCCCTAACTCTCATCACTTATCTAATTTATCTTCTCCTCATGCTGCCAATAATGATATTGGTACTAATCCGCTTCCCACCTCTCTCTCACCACCACCACCACCACCGCCACCGCCACCGCCACCTGTTGTTCTCAGCCCATGCGCCGCCTGCAAGATTCTCCGCCGCCGGTGTGCAGAGAAGTGCGTTTTAGCTCCATACTTCCCTCCTAATGAGCCCCTCAAGTTCACTATTGCCCACAGAATCTTTGGAGCTAGCAACATCATCAAGCTCTTGCAGGAACTTCCAGAGTCTCACAGAGCAGATGCAGTCAGCAGCATGGTTTACGAAGCCAATGCCAGAATTCGAAACCCGATTTATGGCTGCGCGGGTGCAATTTTCCAGCTCCAGAAACAAATCGGTGAGCTCCAAGCCCAACTGGCCAAGGCACAAGCCGAGCTCGCTAACCTGCAATGCCAGCAAGGCAACATGATTGCCCTAATTTGCATGGACATGACACAATCTAAAGAAGAAGCCATTTTGCAGCAGCAACAGTCTAATTACATTGACACAAGCTGTTTTCTGGATGAAAACAATTCGGGCACGGCTTGGGATCCTCTCTGGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

226

Amino Acids

24.4

Weight (kDa)

6.19

Isoelectric Point (pI)

80.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	70 - 167	4.4e-40	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07900 AT2G28500
fragaria_vesca	FvH4_3g33510 FvH4_7g20130
malus_domestica	MD01G1130900.v1.1 MD03G1111600.v1.1 MD07G1178900.v1.1 MD11G1125200.v1.1
prunus_persica	Prupe.2G218000_v2.0.a1 Prupe.6G093900_v2.0.a1
pyrus_communis	pycom01g13960 pycom07g17260 pycom11g10580
rosa_chinensis	RchiOBHm_Chr1g0364081 RchiOBHm_Chr5g0060941
rosa_laevigata	RLG00000027518 RLG00000035417
rosa_multiflora	Rmu_sc0000071.1_g000023 Rmu_sc0000420.1_g000003
rosa_roxburghii	Rroxscaffold_1G00019690 Rroxscaffold_4G00292660
rosa_rugosa	Rorug01G0313300 Rorug05G0335400
rosa_samantha	Rh1AG320800 Rh1BG284000 Rh1CG300400 Rh1DG315400 Rh5AG398000 Rh5BG410700 Rh5CG435900 Rh5DG425200
rosa_wichuraiana	Rw1G028440 Rw5G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	525
AccII	CGCG	1 cut(s)	437
AciI	CCGC	8 cut(s)	140, 176, 182, 188, 216, 232, 235, 437
AclWI	GGATC	2 cut(s)	656, 669
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	1 cut(s)	411
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	428
AluBI	AGCT	7 cut(s)	263, 323, 340, 454, 475, 508, 624
AluI	AGCT	7 cut(s)	263, 323, 340, 454, 475, 508, 624
Alw21I	GWGCWC	2 cut(s)	477, 510
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	2 cut(s)	656, 669
AoxI	GGCC	1 cut(s)	489
ApeKI	GCWGC	5 cut(s)	113, 384, 432, 592, 595
ApoI	RAATTY	1 cut(s)	411
AspLEI	GCGC	2 cut(s)	215, 437
AsuHPI	GGTGA	2 cut(s)	150, 482
AsuII	TTCGAA	1 cut(s)	415
AsuNHI	GCTAGC	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	653
BalI	TGGCCA	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	661
BanII	GRGCYC	3 cut(s)	288, 477, 510
Bbv12I	GWGCWC	2 cut(s)	477, 510
BbvI	GCAGC	5 cut(s)	100, 396, 419, 604, 607
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	669
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	525
BglI	GCCNNNNNGGC	2 cut(s)	488, 531
BisI	GCNGC	7 cut(s)	114, 216, 235, 385, 433, 593, 596
BlsI	GCNGC	7 cut(s)	115, 217, 236, 386, 434, 594, 597
BmiI	GGNNCC	1 cut(s)	663
BmsI	GCATC	1 cut(s)	364
BmtI	GCTAGC	1 cut(s)	327
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	440
Bpu14I	TTCGAA	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	527
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	527
BseMII	CTCAG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	653
BseXI	GCAGC	5 cut(s)	100, 396, 419, 604, 607
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	491
BsiHKAI	GWGCWC	2 cut(s)	477, 510
BsiSI	CCGG	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	366
BsnI	GGCC	1 cut(s)	491
Bsp119I	TTCGAA	1 cut(s)	415
Bsp1286I	GDGCHC	4 cut(s)	288, 477, 510, 653
Bsp143I	GATC	1 cut(s)	661
BspACI	CCGC	8 cut(s)	140, 176, 182, 188, 216, 232, 235, 437
BspANI	GGCC	1 cut(s)	491
BspCNI	CTCAG	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	1 cut(s)	663
BspMI	ACCTGC	1 cut(s)	525
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	2 cut(s)	656, 669
BspT104I	TTCGAA	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	492
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	1 cut(s)	661
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	603
BstBI	TTCGAA	1 cut(s)	415
BstC8I	GCNNGC	4 cut(s)	220, 325, 510, 527
BstDEI	CTNAG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	640
BstFNI	CGCG	1 cut(s)	437
BstHHI	GCGC	2 cut(s)	215, 437
BstKTI	GATC	1 cut(s)	664
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	1 cut(s)	661
BstMWI	GCNNNNNNNGC	5 cut(s)	219, 488, 509, 526, 531
BstSLI	GKGCMC	1 cut(s)	653
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	5 cut(s)	100, 396, 419, 604, 607
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
BsuRI	GGCC	1 cut(s)	491
BtsCI	GGATG	1 cut(s)	640
BveI	ACCTGC	1 cut(s)	525
Cac8I	GCNNGC	4 cut(s)	220, 325, 510, 527
CfoI	GCGC	2 cut(s)	215, 437
Cfr10I	RCCGGY	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	6 cut(s)	110, 210, 388, 538, 556, 562
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	1 cut(s)	663
DpnII	GATC	1 cut(s)	661
EaeI	YGGCCR	1 cut(s)	489
EciI	GGCGGA	1 cut(s)	221
Ecl136II	GAGCTC	2 cut(s)	475, 508
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	3 cut(s)	288, 477, 510
Eco53kI	GAGCTC	2 cut(s)	475, 508
EcoICRI	GAGCTC	2 cut(s)	475, 508
EcoRI	GAATTC	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	3 cut(s)	288, 477, 510
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	6 cut(s)	113, 213, 391, 541, 559, 565
FaiI	YATR	9 cut(s)	111, 211, 268, 389, 429, 539, 557, 563, 676
FatI	CATG	6 cut(s)	109, 209, 387, 537, 555, 561
FauI	CCCGC	1 cut(s)	430
Fnu4HI	GCNGC	7 cut(s)	114, 216, 235, 385, 433, 593, 596
FokI	GGATG	1 cut(s)	647
FriOI	GRGCYC	3 cut(s)	288, 477, 510
Fsp4HI	GCNGC	7 cut(s)	114, 216, 235, 385, 433, 593, 596
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	2 cut(s)	214, 436
GluI	GCNGC	7 cut(s)	114, 216, 235, 385, 433, 593, 596
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	491
HapII	CCGG	1 cut(s)	238
HhaI	GCGC	2 cut(s)	215, 437
Hin1II	CATG	6 cut(s)	113, 213, 391, 541, 559, 565
Hin6I	GCGC	2 cut(s)	213, 435
HinP1I	GCGC	2 cut(s)	213, 435
HinfI	GANTC	4 cut(s)	4, 226, 312, 359
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	2 cut(s)	150, 482
Hpy166II	GTNNAC	3 cut(s)	8, 297, 394
Hpy188III	TCNNGA	4 cut(s)	356, 457, 632, 670
Hpy8I	GTNNAC	3 cut(s)	8, 297, 394
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	1 cut(s)	603
HpyCH4V	TGCA	8 cut(s)	222, 245, 346, 377, 443, 520, 555, 592
HpyF10VI	GCNNNNNNNGC	5 cut(s)	219, 488, 509, 526, 531
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	6 cut(s)	113, 213, 391, 541, 559, 565
HspAI	GCGC	2 cut(s)	213, 435
Kzo9I	GATC	1 cut(s)	661
LmnI	GCTCC	4 cut(s)	268, 320, 459, 480
Lsp1109I	GCAGC	5 cut(s)	100, 396, 419, 604, 607
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	1 cut(s)	324
MalI	GATC	1 cut(s)	663
MboI	GATC	1 cut(s)	661
MboII	GAAGA	4 cut(s)	24, 36, 93, 590
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	4 cut(s)	288, 477, 510, 653
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	6 cut(s)	94, 411, 444, 549, 607, 643
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	2 cut(s)	13, 368
MnlI	CCTC	8 cut(s)	21, 46, 79, 117, 160, 285, 299, 675
Mox20I	TGGCCA	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	491
MslI	CAYNNNNRTG	1 cut(s)	560
Msp20I	TGGCCA	1 cut(s)	491
MspI	CCGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	5 cut(s)	219, 488, 509, 526, 531
NdeII	GATC	1 cut(s)	661
NheI	GCTAGC	1 cut(s)	323
NlaIII	CATG	6 cut(s)	113, 213, 391, 541, 559, 565
NlaIV	GGNNCC	1 cut(s)	663
NmeAIII	GCCGAG	1 cut(s)	529
NspV	TTCGAA	1 cut(s)	415
PfeI	GAWTC	2 cut(s)	226, 312
PkrI	GCNGC	7 cut(s)	115, 217, 236, 386, 434, 594, 597
PleI	GAGTC	2 cut(s)	12, 367
PpsI	GAGTC	2 cut(s)	12, 367
Psp124BI	GAGCTC	2 cut(s)	477, 510
PspN4I	GGNNCC	1 cut(s)	663
PsuI	RGATCY	1 cut(s)	661
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
RseI	CAYNNNNRTG	1 cut(s)	560
SacI	GAGCTC	2 cut(s)	477, 510
SatI	GCNGC	7 cut(s)	114, 216, 235, 385, 433, 593, 596
Sau3AI	GATC	1 cut(s)	661
SchI	GAGTC	2 cut(s)	13, 368
SduI	GDGCHC	4 cut(s)	288, 477, 510, 653
SfaNI	GCATC	1 cut(s)	364
SfuI	TTCGAA	1 cut(s)	415
SgrAI	CRCCGGYG	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	6 cut(s)	94, 411, 444, 549, 607, 643
SsiI	CCGC	8 cut(s)	140, 176, 182, 188, 216, 232, 235, 437
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	2 cut(s)	477, 510
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	1 cut(s)	603
TaqI	TCGA	1 cut(s)	415
TasI	AATT	6 cut(s)	94, 411, 444, 549, 607, 643
TauI	GCSGC	2 cut(s)	218, 237
TfiI	GAWTC	2 cut(s)	226, 312
TseI	GCWGC	5 cut(s)	113, 384, 432, 592, 595
TspDTI	ATGAA	2 cut(s)	48, 651
XapI	RAATTY	1 cut(s)	411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.