RchiOBHm_Chr5g0060941

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004073
Physical Location & Seq
Reverse (-)
66246983 .. 66248932
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33736

Sequence Viewer

Length: 693 bp
ATGGAGTGCAGTACTGACACTAGCATTAACACAACAAACACTACCTATGCACCATCAACCCCTTTCTCTCATCAATCTCCTTCTTCTTCCCAATCATCTTCTCCTCCAATTACTCCAACTCAAGCTCAAACTCAAATTCCACCACCCCAGAATGTTGTGGTCAGTCCTTGTGCTGCTTGCAAGATCTTGAGAAGAAGATGTGCAGAGAAATGTGTGTTGGCTCCTTACTTTCCTCCCTCTGAGCCAGCCAAGTTCACCATAGCACATCGAGTCTTTGGTGCTAGCAACATCATCAAGTTCTTGCAGGACCTTCCAGAATCTCAAAGGGCTGATGCAGTGAGCAGCATGGTTTATGAGGCCAGTGCAAGAATCAGAGACCCAGTTTATGGTTGTGCAGGGGCAATCTGCCATCTCCAAAAACAAGTGAGTGACCTTCAAGCACAATTGGCCAAGGCACAAGCTGAGGTTGTCAACATGCAGTGCCAGCAAGCAAACCTTGTAGCACTGCTCATGGAAATGGCAAAACCCGATCACCACGAACAGGGATCCCCGGATCAACAATCACTCGATCATCACAACTTCATCACCAGCCCTCTTCCTCATAGCAATATACTCAATCAGAGCAACTTGAGCTTCCTTGATGATCATAACTCTGCTCTAGGCTCATTCTGGGAATTACCGCTTTGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

230

Amino Acids

25.15

Weight (kDa)

5.95

Isoelectric Point (pI)

69.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 56 - 153 3.6e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 386
AciI CCGC 1 cut(s) 680
AclWI GGATC 3 cut(s) 540, 553, 561
AcoI YGGCCR 1 cut(s) 447
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 2 cut(s) 386, 541
AgsI TTSAA 1 cut(s) 437
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 3 cut(s) 125, 461, 633
AluI AGCT 3 cut(s) 125, 461, 633
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 3 cut(s) 540, 553, 561
AoxI GGCC 2 cut(s) 357, 447
ApeKI GCWGC 2 cut(s) 173, 342
ApoI RAATTY 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 307
AsuC2I CCSGG 1 cut(s) 551
AsuHPI GGTGA 3 cut(s) 247, 524, 577
AsuNHI GCTAGC 1 cut(s) 281
AvaII GGWCC 1 cut(s) 307
BalI TGGCCA 1 cut(s) 449
BamHI GGATCC 1 cut(s) 545
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 2 cut(s) 160, 354
BccI CCATC 2 cut(s) 61, 417
BclI TGATCA 1 cut(s) 643
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 3 cut(s) 21, 282, 659
BglII AGATCT 1 cut(s) 183
BisI GCNGC 2 cut(s) 174, 343
BlsI GCNGC 2 cut(s) 175, 344
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 551
Bme18I GGWCC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 2 cut(s) 222, 547
BmrFI CCNGG 1 cut(s) 551
BmrI ACTGGG 1 cut(s) 374
BmsI GCATC 1 cut(s) 322
BmtI GCTAGC 1 cut(s) 285
BmuI ACTGGG 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 462
BpuEI CTTGAG 3 cut(s) 105, 208, 649
BpuMI CCSGG 1 cut(s) 551
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 450, 549
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 541
Bse1I ACTGG 2 cut(s) 360, 380
BseDI CCNNGG 2 cut(s) 450, 549
BseLI CCNNNNNNNGG 2 cut(s) 386, 541
BseMII CTCAG 2 cut(s) 231, 453
BseNI ACTGG 2 cut(s) 360, 380
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 160, 354
BsgI GTGCAG 3 cut(s) 28, 222, 414
BshFI GGCC 2 cut(s) 359, 449
BsiSI CCGG 1 cut(s) 551
BslI CCNNNNNNNGG 2 cut(s) 386, 541
BsmAI GTCTC 1 cut(s) 369
BsnI GGCC 2 cut(s) 359, 449
Bso31I GGTCTC 1 cut(s) 369
Bsp143I GATC 6 cut(s) 183, 529, 545, 553, 568, 643
BspACI CCGC 1 cut(s) 680
BspANI GGCC 2 cut(s) 359, 449
BspCNI CTCAG 2 cut(s) 232, 454
BspLI GGNNCC 2 cut(s) 222, 547
BspOI GCTAGC 1 cut(s) 285
BspPI GGATC 3 cut(s) 540, 553, 561
BspTNI GGTCTC 1 cut(s) 369
BsrI ACTGG 2 cut(s) 360, 380
BssECI CCNNGG 2 cut(s) 450, 549
BssMI GATC 6 cut(s) 183, 529, 545, 553, 568, 643
BssT1I CCWWGG 1 cut(s) 450
Bst6I CTCTTC 1 cut(s) 600
BstC8I GCNNGC 5 cut(s) 178, 246, 283, 485, 489
BstDEI CTNAG 2 cut(s) 240, 462
BstKTI GATC 6 cut(s) 186, 532, 548, 556, 571, 646
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 6 cut(s) 183, 529, 545, 553, 568, 643
BstMWI GCNNNNNNNGC 3 cut(s) 446, 484, 630
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 1 cut(s) 549
BstV1I GCAGC 2 cut(s) 160, 354
BstX2I RGATCY 2 cut(s) 183, 545
BstYI RGATCY 2 cut(s) 183, 545
BsuRI GGCC 2 cut(s) 359, 449
BtsI GCAGTG 3 cut(s) 342, 485, 503
BtsIMutI CAGTG 4 cut(s) 342, 367, 485, 503
Cac8I GCNNGC 5 cut(s) 178, 246, 283, 485, 489
Cfr13I GGNCC 1 cut(s) 307
Csp6I GTAC 1 cut(s) 12
CviAII CATG 4 cut(s) 346, 475, 511, 690
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 240, 462
DpnI GATC 6 cut(s) 185, 531, 547, 555, 570, 645
DpnII GATC 6 cut(s) 183, 529, 545, 553, 568, 643
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
Eco130I CCWWGG 1 cut(s) 450
Eco31I GGTCTC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 4 cut(s) 349, 478, 514, 693
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FatI CATG 4 cut(s) 345, 474, 510, 689
FbaI TGATCA 1 cut(s) 643
Fnu4HI GCNGC 2 cut(s) 174, 343
Fsp4HI GCNGC 2 cut(s) 174, 343
FspBI CTAG 3 cut(s) 21, 282, 659
GluI GCNGC 2 cut(s) 174, 343
HaeIII GGCC 2 cut(s) 359, 449
HapII CCGG 1 cut(s) 551
Hin1II CATG 4 cut(s) 349, 478, 514, 693
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 3 cut(s) 270, 317, 369
HpaII CCGG 1 cut(s) 551
HphI GGTGA 3 cut(s) 247, 524, 577
Hpy166II GTNNAC 2 cut(s) 255, 472
Hpy188I TCNGA 3 cut(s) 241, 374, 621
Hpy188III TCNNGA 2 cut(s) 187, 314
Hpy8I GTNNAC 2 cut(s) 255, 472
HpyAV CCTTC 3 cut(s) 90, 320, 443
HpyCH4V TGCA 9 cut(s) 9, 50, 180, 203, 304, 335, 365, 395, 478
HpyF10VI GCNNNNNNNGC 3 cut(s) 446, 484, 630
HpyF3I CTNAG 2 cut(s) 240, 462
Hsp92II CATG 4 cut(s) 349, 478, 514, 693
Ksp22I TGATCA 1 cut(s) 643
Kzo9I GATC 6 cut(s) 183, 529, 545, 553, 568, 643
LmnI GCTCC 1 cut(s) 226
Lsp1109I GCAGC 2 cut(s) 160, 354
LweI GCATC 1 cut(s) 322
MaeI CTAG 3 cut(s) 21, 282, 659
MaeIII GTNAC 1 cut(s) 428
MalI GATC 6 cut(s) 185, 531, 547, 555, 570, 645
MboI GATC 6 cut(s) 183, 529, 545, 553, 568, 643
MboII GAAGA 6 cut(s) 75, 78, 90, 204, 207, 587
MfeI CAATTG 1 cut(s) 443
MflI RGATCY 2 cut(s) 183, 545
MlsI TGGCCA 1 cut(s) 449
MluCI AATT 4 cut(s) 108, 135, 443, 674
MluNI TGGCCA 1 cut(s) 449
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 7 cut(s) 114, 243, 247, 349, 457, 603, 609
Mox20I TGGCCA 1 cut(s) 449
MscI TGGCCA 1 cut(s) 449
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 515
Msp20I TGGCCA 1 cut(s) 449
MspI CCGG 1 cut(s) 551
MspR9I CCNGG 1 cut(s) 551
MunI CAATTG 1 cut(s) 443
MwoI GCNNNNNNNGC 3 cut(s) 446, 484, 630
NciI CCSGG 1 cut(s) 551
NdeII GATC 6 cut(s) 183, 529, 545, 553, 568, 643
NheI GCTAGC 1 cut(s) 281
NlaIII CATG 4 cut(s) 349, 478, 514, 693
NlaIV GGNNCC 2 cut(s) 222, 547
NmuCI GTSAC 1 cut(s) 428
NspI RCATGY 1 cut(s) 478
PfeI GAWTC 2 cut(s) 317, 369
PflMI CCANNNNNTGG 1 cut(s) 386
PkrI GCNGC 2 cut(s) 175, 344
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PpuMI RGGWCCY 1 cut(s) 307
Psp5II RGGWCCY 1 cut(s) 307
PspN4I GGNNCC 2 cut(s) 222, 547
PspPI GGNCC 1 cut(s) 307
PspPPI RGGWCCY 1 cut(s) 307
PsuI RGATCY 2 cut(s) 183, 545
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 515
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 2 cut(s) 174, 343
Sau3AI GATC 6 cut(s) 183, 529, 545, 553, 568, 643
Sau96I GGNCC 1 cut(s) 307
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 1 cut(s) 279
ScrFI CCNGG 1 cut(s) 551
SetI ASST 8 cut(s) 47, 127, 312, 435, 463, 468, 498, 635
SfaNI GCATC 1 cut(s) 322
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 515
SmlI CTYRAG 3 cut(s) 120, 187, 628
SmoI CTYRAG 3 cut(s) 120, 187, 628
Sse9I AATT 4 cut(s) 108, 135, 443, 674
SsiI CCGC 1 cut(s) 680
SspMI CTAG 3 cut(s) 21, 282, 659
StyD4I CCNGG 1 cut(s) 549
StyI CCWWGG 1 cut(s) 450
TaqI TCGA 2 cut(s) 268, 567
TasI AATT 4 cut(s) 108, 135, 443, 674
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 2 cut(s) 317, 369
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 4 cut(s) 342, 367, 485, 510
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 2 cut(s) 173, 342
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 1 cut(s) 571
TspRI CASTG 4 cut(s) 342, 367, 485, 510
Van91I CCANNNNNTGG 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 307
XapI RAATTY 1 cut(s) 135
XceI RCATGY 1 cut(s) 478
XspI CTAG 3 cut(s) 21, 282, 659
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.