MD03G1111600.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0004073
Physical Location & Seq
Forward (+)
9716836 .. 9718862
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1111600.v1.1.491

Sequence Viewer

Length: 642 bp
ATGGAGTGCAGTACAGAAACAATGAACACAAATTACACAACCACTTCATCAACTATGTCTCAATCTCCTCCTTCTTCTTCACCATCGTCTCCTCCAACTCTAACTCCGACTCCAAGTCCACCAGTTGTTGTAAGTCCTTGTGCTGCATGCAAGATCTTGAGGAGAAGATGTGCAGACAAATGTATTTTGGCTCCTTACTTTCCTCCATCTGAGCCAGCCAAGTTTACTATAGCTCATCGTGTCTTTGGGGCAAGCAATATCATCAAGTTATTGCAGGAACTTCCAGAATCTCAAAGAGCTGATGCAGTGAGCAGCATGGTTTATGAGGCAAGTGCAAGAATTAGAGACCCAGTTTATGGGTGTGCAGGAGCAATCTGCCACCTACAGAAGCAAGTGAATGAGCTGCAAGCACAACTAGCAAAGGCACAGGCTGAGGTTGTCAACATGCAATGCCAACAAGCCAACCTTGTGACTCTGATTTGCATGGAAATGTCACAACCTAATTCCGAGCAAGGATCTCCTCCACAATCACTTGATCACAACTTCATCACCAACATTCCTCACGGAGGCAACCAGACCAACTTAGGCTTCCTTGATGATTCCACCACTCTAGGCTCATTGTGGGATCCACTTTGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

214

Amino Acids

23.04

Weight (kDa)

5.51

Isoelectric Point (pI)

78.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 46 - 143 1.3e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 356
AclWI GGATC 3 cut(s) 523, 620, 633
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 2 cut(s) 356, 566
AhdI GACNNNNNGTC 1 cut(s) 114
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AluBI AGCT 3 cut(s) 233, 299, 403
AluI AGCT 3 cut(s) 233, 299, 403
Alw26I GTCTC 3 cut(s) 63, 93, 339
AlwI GGATC 3 cut(s) 523, 620, 633
ApeKI GCWGC 3 cut(s) 143, 312, 403
AsuHPI GGTGA 2 cut(s) 72, 541
BamHI GGATCC 1 cut(s) 625
BbvCI CCTCAGC 1 cut(s) 432
BbvI GCAGC 3 cut(s) 130, 324, 390
BccI CCATC 2 cut(s) 91, 214
BclI TGATCA 1 cut(s) 535
BcoDI GTCTC 3 cut(s) 63, 93, 339
BfaI CTAG 2 cut(s) 416, 611
BfmI CTRYAG 2 cut(s) 228, 383
BglII AGATCT 1 cut(s) 153
BisI GCNGC 3 cut(s) 144, 313, 404
BlsI GCNGC 3 cut(s) 145, 314, 405
BmeRI GACNNNNNGTC 1 cut(s) 114
BmiI GGNNCC 2 cut(s) 192, 627
BmrI ACTGGG 1 cut(s) 344
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 344
Bpu10I CCTNAGC 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 339
BsaXI ACNNNNNCTCC 6 cut(s) 88, 94, 118, 124, 154, 184
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 566
Bse1I ACTGG 2 cut(s) 122, 350
Bse3DI GCAATG 1 cut(s) 455
BseLI CCNNNNNNNGG 2 cut(s) 356, 566
BseMI GCAATG 1 cut(s) 455
BseMII CTCAG 2 cut(s) 201, 423
BseNI ACTGG 2 cut(s) 122, 350
BseRI GAGGAG 4 cut(s) 57, 81, 175, 510
BseXI GCAGC 3 cut(s) 130, 324, 390
BsgI GTGCAG 3 cut(s) 28, 192, 384
BslI CCNNNNNNNGG 2 cut(s) 356, 566
BsmAI GTCTC 3 cut(s) 63, 93, 339
BsmBI CGTCTC 1 cut(s) 93
Bso31I GGTCTC 1 cut(s) 339
Bsp143I GATC 4 cut(s) 153, 515, 535, 625
BspCNI CTCAG 2 cut(s) 202, 424
BspLI GGNNCC 2 cut(s) 192, 627
BspPI GGATC 3 cut(s) 523, 620, 633
BspTNI GGTCTC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 455
BsrI ACTGG 2 cut(s) 122, 350
BssMI GATC 4 cut(s) 153, 515, 535, 625
BstC8I GCNNGC 4 cut(s) 148, 216, 253, 408
BstDEI CTNAG 3 cut(s) 210, 432, 583
BstENI CCTNNNNNAGG 1 cut(s) 564
BstKTI GATC 4 cut(s) 156, 518, 538, 628
BstMAI GTCTC 3 cut(s) 63, 93, 339
BstMBI GATC 4 cut(s) 153, 515, 535, 625
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNSI RCATGY 2 cut(s) 150, 448
BstSFI CTRYAG 2 cut(s) 228, 383
BstV1I GCAGC 3 cut(s) 130, 324, 390
BstX2I RGATCY 3 cut(s) 153, 515, 625
BstYI RGATCY 3 cut(s) 153, 515, 625
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 4 cut(s) 148, 216, 253, 408
Csp6I GTAC 1 cut(s) 12
CviAII CATG 5 cut(s) 147, 316, 445, 484, 639
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 3 cut(s) 210, 432, 583
DpnI GATC 4 cut(s) 155, 517, 537, 627
DpnII GATC 4 cut(s) 153, 515, 535, 625
DriI GACNNNNNGTC 1 cut(s) 114
Eam1105I GACNNNNNGTC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 339
EcoNI CCTNNNNNAGG 1 cut(s) 564
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 5 cut(s) 150, 319, 448, 487, 642
FaiI YATR 9 cut(s) 56, 148, 230, 317, 324, 357, 446, 485, 640
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FatI CATG 5 cut(s) 146, 315, 444, 483, 638
FbaI TGATCA 1 cut(s) 535
Fnu4HI GCNGC 3 cut(s) 144, 313, 404
Fsp4HI GCNGC 3 cut(s) 144, 313, 404
FspBI CTAG 2 cut(s) 416, 611
GluI GCNGC 3 cut(s) 144, 313, 404
Hin1II CATG 5 cut(s) 150, 319, 448, 487, 642
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 4 cut(s) 109, 287, 472, 599
HphI GGTGA 2 cut(s) 72, 541
Hpy166II GTNNAC 3 cut(s) 119, 225, 442
Hpy188I TCNGA 4 cut(s) 108, 211, 477, 508
Hpy188III TCNNGA 2 cut(s) 157, 284
Hpy8I GTNNAC 3 cut(s) 119, 225, 442
HpyAV CCTTC 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 3 cut(s) 210, 432, 583
Hsp92II CATG 5 cut(s) 150, 319, 448, 487, 642
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 4 cut(s) 153, 515, 535, 625
LmnI GCTCC 2 cut(s) 196, 368
LpnPI CCDG 8 cut(s) 135, 228, 260, 297, 351, 363, 413, 587
Lsp1109I GCAGC 3 cut(s) 130, 324, 390
LweI GCATC 1 cut(s) 292
MaeI CTAG 2 cut(s) 416, 611
MaeIII GTNAC 2 cut(s) 469, 492
MalI GATC 4 cut(s) 155, 517, 537, 627
MboI GATC 4 cut(s) 153, 515, 535, 625
MboII GAAGA 3 cut(s) 66, 69, 177
MflI RGATCY 3 cut(s) 153, 515, 625
MluCI AATT 3 cut(s) 31, 339, 502
MlyI GAGTC 2 cut(s) 103, 466
MmeI TCCRAC 2 cut(s) 119, 131
MnlI CCTC 9 cut(s) 78, 102, 153, 213, 319, 427, 531, 560, 570
MslI CAYNNNNRTG 1 cut(s) 488
MwoI GCNNNNNNNGC 1 cut(s) 416
NdeII GATC 4 cut(s) 153, 515, 535, 625
NlaIII CATG 5 cut(s) 150, 319, 448, 487, 642
NlaIV GGNNCC 2 cut(s) 192, 627
NmuCI GTSAC 2 cut(s) 469, 492
NspI RCATGY 2 cut(s) 150, 448
PaeI GCATGC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 287, 599
PflMI CCANNNNNTGG 1 cut(s) 356
PkrI GCNGC 3 cut(s) 145, 314, 405
PleI GAGTC 2 cut(s) 103, 466
PpsI GAGTC 2 cut(s) 103, 466
PspN4I GGNNCC 2 cut(s) 192, 627
PsrI GAACNNNNNNTAC 2 cut(s) 17, 49
PsuI RGATCY 3 cut(s) 153, 515, 625
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 488
SatI GCNGC 3 cut(s) 144, 313, 404
Sau3AI GATC 4 cut(s) 153, 515, 535, 625
SchI GAGTC 2 cut(s) 103, 466
SetI ASST 7 cut(s) 235, 301, 384, 405, 438, 468, 502
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 2 cut(s) 228, 383
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
SphI GCATGC 1 cut(s) 150
Sse9I AATT 3 cut(s) 31, 339, 502
SspMI CTAG 2 cut(s) 416, 611
TasI AATT 3 cut(s) 31, 339, 502
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 2 cut(s) 287, 599
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 2 cut(s) 469, 492
TseI GCWGC 3 cut(s) 143, 312, 403
Tsp45I GTSAC 2 cut(s) 469, 492
TspDTI ATGAA 3 cut(s) 36, 38, 535
TspGWI ACGGA 1 cut(s) 579
TspRI CASTG 1 cut(s) 312
Van91I CCANNNNNTGG 1 cut(s) 356
XagI CCTNNNNNAGG 1 cut(s) 564
XceI RCATGY 2 cut(s) 150, 448
XspI CTAG 2 cut(s) 416, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.