pycom07g17260

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0004073
Physical Location & Seq
Reverse (-)
19775584 .. 19776705
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g17260.1

Sequence Viewer

Length: 699 bp
ATGGAATTCGATGCCAAAACTACCACCACTATGAGTCCACCTCCATTCTCCTACTCTCCATCTTCCTCTCCTTCTTCTCCCATTACTACATCATTTCCCTCCCCTAACTCTCATCCCTTATCTAATTTATCTTCTCCTCATGCTGCTGCCAGTAATAATATTAGTACTAACCCGCTTCCCACCTCTCTTTCACCACCACCACCCCCGCCGCCACCTGTTGTTCTCAGCCCATGCGCCGCCTGCAAGATTCTCCGCCGCCGGTGTGCAGAGAAGTGCGTTTTAGCTCCATACTTCCCTCCTAATGAGCCCCTCAAGTTCACTATTGCCCACAGAATCTTTGGAGCTAGCAACATCATCAAGCTCTTGCAGGAACTTCCAGAGTCTCACAGAGCAGATGCAGTGAGCAGCATGGTTTACGAAGCAAATGCCAGAATTCGAAACCCGATTTATGGCTGCGCGGGAGCAATTTTCCAGCTCCAGAAACAAATCGGTGAGCTCCAAGCCCAACTGGCCAAGGCACAAGCCGAGCTCGCTAACCTGCAATGCCAGCAAGGCAACATGATTGCCCTAATTTGCATGGACATGACACAATCTAAAGAAGAAGCCATTTTGCAGCAGCAACAGTCTAATTACATTGACACAAGCTGTTTTCTGGATGAAAACAATTCGGGCACGGCTTGGGAGCCTCTCTGGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

233

Amino Acids

25.2

Weight (kDa)

6.07

Isoelectric Point (pI)

77.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 77 - 174 4.7e-40 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 546
AccII CGCG 1 cut(s) 458
AciI CCGC 7 cut(s) 173, 206, 209, 237, 253, 256, 458
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 2 cut(s) 5, 432
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 449
AluBI AGCT 7 cut(s) 284, 344, 361, 475, 496, 529, 645
AluI AGCT 7 cut(s) 284, 344, 361, 475, 496, 529, 645
Alw21I GWGCWC 2 cut(s) 498, 531
Alw26I GTCTC 1 cut(s) 387
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 6 cut(s) 143, 146, 405, 453, 613, 616
ApoI RAATTY 2 cut(s) 5, 432
AspLEI GCGC 2 cut(s) 236, 458
AsuHPI GGTGA 2 cut(s) 183, 503
AsuII TTCGAA 1 cut(s) 436
AsuNHI GCTAGC 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 674
BalI TGGCCA 1 cut(s) 512
BanII GRGCYC 3 cut(s) 309, 498, 531
Bbv12I GWGCWC 2 cut(s) 498, 531
BbvI GCAGC 6 cut(s) 130, 133, 417, 440, 625, 628
BccI CCATC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 690
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 1 cut(s) 345
BfuAI ACCTGC 1 cut(s) 546
BglI GCCNNNNNGGC 2 cut(s) 509, 552
BisI GCNGC 9 cut(s) 144, 147, 209, 237, 256, 406, 454, 614, 617
BlsI GCNGC 9 cut(s) 145, 148, 210, 238, 257, 407, 455, 615, 618
BmcAI AGTACT 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 684
BmsI GCATC 1 cut(s) 385
BmtI GCTAGC 1 cut(s) 348
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BpmI CTGGAG 1 cut(s) 461
Bpu14I TTCGAA 1 cut(s) 436
BpuEI CTTGAG 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 513
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 258
Bse1I ACTGG 2 cut(s) 150, 513
Bse3DI GCAATG 1 cut(s) 548
BseDI CCNNGG 1 cut(s) 513
BseGI GGATG 2 cut(s) 112, 661
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMI GCAATG 1 cut(s) 548
BseMII CTCAG 1 cut(s) 238
BseNI ACTGG 2 cut(s) 150, 513
BseRI GAGGAG 1 cut(s) 126
BseSI GKGCMC 1 cut(s) 674
BseXI GCAGC 6 cut(s) 130, 133, 417, 440, 625, 628
BsgI GTGCAG 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 458
BshFI GGCC 1 cut(s) 512
BsiHKAI GWGCWC 2 cut(s) 498, 531
BsiSI CCGG 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 387
BsnI GGCC 1 cut(s) 512
Bsp119I TTCGAA 1 cut(s) 436
Bsp1286I GDGCHC 4 cut(s) 309, 498, 531, 674
BspACI CCGC 7 cut(s) 173, 206, 209, 237, 253, 256, 458
BspANI GGCC 1 cut(s) 512
BspCNI CTCAG 1 cut(s) 237
BspFNI CGCG 1 cut(s) 458
BspLI GGNNCC 1 cut(s) 684
BspMI ACCTGC 1 cut(s) 546
BspOI GCTAGC 1 cut(s) 348
BspT104I TTCGAA 1 cut(s) 436
BsrDI GCAATG 1 cut(s) 548
BsrFI RCCGGY 1 cut(s) 258
BsrI ACTGG 2 cut(s) 150, 513
BssAI RCCGGY 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 513
Bst4CI ACNGT 1 cut(s) 624
BstBI TTCGAA 1 cut(s) 436
BstC8I GCNNGC 4 cut(s) 241, 346, 531, 548
BstDEI CTNAG 1 cut(s) 224
BstF5I GGATG 2 cut(s) 112, 661
BstFNI CGCG 1 cut(s) 458
BstHHI GCGC 2 cut(s) 236, 458
BstMAI GTCTC 1 cut(s) 387
BstMWI GCNNNNNNNGC 5 cut(s) 240, 509, 530, 547, 552
BstSLI GKGCMC 1 cut(s) 674
BstUI CGCG 1 cut(s) 458
BstV1I GCAGC 6 cut(s) 130, 133, 417, 440, 625, 628
BsuRI GGCC 1 cut(s) 512
BtsCI GGATG 2 cut(s) 112, 661
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 405
BveI ACCTGC 1 cut(s) 546
Cac8I GCNNGC 4 cut(s) 241, 346, 531, 548
CfoI GCGC 2 cut(s) 236, 458
Cfr10I RCCGGY 1 cut(s) 258
Csp6I GTAC 1 cut(s) 165
CviAII CATG 6 cut(s) 140, 231, 409, 559, 577, 583
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 1 cut(s) 224
EaeI YGGCCR 1 cut(s) 510
EciI GGCGGA 1 cut(s) 242
Ecl136II GAGCTC 2 cut(s) 496, 529
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 3 cut(s) 309, 498, 531
Eco53kI GAGCTC 2 cut(s) 496, 529
EcoICRI GAGCTC 2 cut(s) 496, 529
EcoRI GAATTC 2 cut(s) 5, 432
EcoT14I CCWWGG 1 cut(s) 513
EcoT38I GRGCYC 3 cut(s) 309, 498, 531
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 6 cut(s) 143, 234, 412, 562, 580, 586
FatI CATG 6 cut(s) 139, 230, 408, 558, 576, 582
FauI CCCGC 3 cut(s) 180, 213, 451
Fnu4HI GCNGC 9 cut(s) 144, 147, 209, 237, 256, 406, 454, 614, 617
FokI GGATG 2 cut(s) 99, 668
FriOI GRGCYC 3 cut(s) 309, 498, 531
Fsp4HI GCNGC 9 cut(s) 144, 147, 209, 237, 256, 406, 454, 614, 617
FspBI CTAG 1 cut(s) 345
GlaI GCGC 2 cut(s) 235, 457
GluI GCNGC 9 cut(s) 144, 147, 209, 237, 256, 406, 454, 614, 617
GsuI CTGGAG 1 cut(s) 461
HaeIII GGCC 1 cut(s) 512
HapII CCGG 1 cut(s) 259
HhaI GCGC 2 cut(s) 236, 458
Hin1II CATG 6 cut(s) 143, 234, 412, 562, 580, 586
Hin6I GCGC 2 cut(s) 234, 456
HinP1I GCGC 2 cut(s) 234, 456
HinfI GANTC 4 cut(s) 34, 247, 333, 380
HpaII CCGG 1 cut(s) 259
HphI GGTGA 2 cut(s) 183, 503
Hpy166II GTNNAC 3 cut(s) 38, 318, 415
Hpy188III TCNNGA 4 cut(s) 377, 478, 653, 691
Hpy8I GTNNAC 3 cut(s) 38, 318, 415
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 624
HpyCH4V TGCA 7 cut(s) 243, 266, 367, 398, 541, 576, 613
HpyF10VI GCNNNNNNNGC 5 cut(s) 240, 509, 530, 547, 552
HpyF3I CTNAG 1 cut(s) 224
Hsp92II CATG 6 cut(s) 143, 234, 412, 562, 580, 586
HspAI GCGC 2 cut(s) 234, 456
LmnI GCTCC 6 cut(s) 289, 341, 461, 480, 501, 682
Lsp1109I GCAGC 6 cut(s) 130, 133, 417, 440, 625, 628
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 345
MboII GAAGA 4 cut(s) 54, 66, 123, 611
MhlI GDGCHC 4 cut(s) 309, 498, 531, 674
MlsI TGGCCA 1 cut(s) 512
MluCI AATT 7 cut(s) 5, 124, 432, 465, 570, 628, 664
MluNI TGGCCA 1 cut(s) 512
MlyI GAGTC 2 cut(s) 43, 389
MnlI CCTC 8 cut(s) 51, 76, 109, 147, 193, 306, 320, 696
Mox20I TGGCCA 1 cut(s) 512
MscI TGGCCA 1 cut(s) 512
MslI CAYNNNNRTG 2 cut(s) 29, 581
Msp20I TGGCCA 1 cut(s) 512
MspI CCGG 1 cut(s) 259
MvnI CGCG 1 cut(s) 458
MwoI GCNNNNNNNGC 5 cut(s) 240, 509, 530, 547, 552
NheI GCTAGC 1 cut(s) 344
NlaIII CATG 6 cut(s) 143, 234, 412, 562, 580, 586
NlaIV GGNNCC 1 cut(s) 684
NmeAIII GCCGAG 1 cut(s) 550
NspV TTCGAA 1 cut(s) 436
PfeI GAWTC 2 cut(s) 247, 333
PkrI GCNGC 9 cut(s) 145, 148, 210, 238, 257, 407, 455, 615, 618
PleI GAGTC 2 cut(s) 42, 388
PpsI GAGTC 2 cut(s) 42, 388
Psp124BI GAGCTC 2 cut(s) 498, 531
PspN4I GGNNCC 1 cut(s) 684
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
RseI CAYNNNNRTG 2 cut(s) 29, 581
SacI GAGCTC 2 cut(s) 498, 531
SatI GCNGC 9 cut(s) 144, 147, 209, 237, 256, 406, 454, 614, 617
ScaI AGTACT 1 cut(s) 166
SchI GAGTC 2 cut(s) 43, 389
SduI GDGCHC 4 cut(s) 309, 498, 531, 674
SfaNI GCATC 1 cut(s) 385
SfuI TTCGAA 1 cut(s) 436
SgrAI CRCCGGYG 1 cut(s) 258
SmiMI CAYNNNNRTG 2 cut(s) 29, 581
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 7 cut(s) 5, 124, 432, 465, 570, 628, 664
SsiI CCGC 7 cut(s) 173, 206, 209, 237, 253, 256, 458
SspI AATATT 1 cut(s) 160
SspMI CTAG 1 cut(s) 345
SstI GAGCTC 2 cut(s) 498, 531
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 1 cut(s) 624
TaqI TCGA 2 cut(s) 9, 436
TasI AATT 7 cut(s) 5, 124, 432, 465, 570, 628, 664
TatI WGTACW 1 cut(s) 164
TauI GCSGC 3 cut(s) 211, 239, 258
TfiI GAWTC 2 cut(s) 247, 333
TscAI CASTG 1 cut(s) 405
TseI GCWGC 6 cut(s) 143, 146, 405, 453, 613, 616
TspDTI ATGAA 1 cut(s) 672
TspRI CASTG 1 cut(s) 405
XapI RAATTY 2 cut(s) 5, 432
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XspI CTAG 1 cut(s) 345
ZrmI AGTACT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.