FvH4_3g33510

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004073
Physical Location & Seq
Reverse (-)
28927689 .. 28929608
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33510.t1

Sequence Viewer

Length: 711 bp
ATGGAGTGTAGCACTGATACTAGCTTTAACACACCAAACAGTACTACCTATGCACCCTCAACCCCTTTCTCTCATCACTCCTCTTCTTCTTCCCGATCGTCTTCTCCTCCAATCACTCCAACTCAGACTCTTACTCAAGCTCAAACTCAAATCCCACTTCCCCAGAATGTTGTGGTTAGTCCTTGTGCTGCTTGCAAGATCTTGAGGAGAAGATGTGCAGAGAAATGTGTGTTGGCTCCCTACTTTCCTCCCTCTGAGCCAGCCAAGTTCACCATAGCTCATCGAGTCTTTGGTGCTAGCAACATCATCAAGTTCTTGCAGGACCTGCCTGAGTCTCAAAGAGCTGATGCAGTGAGCAGCATGGTTTATGAGGCCAGTGCAAGAATCAGAGACCCTGTTTATGGCTGTGCAGGGGCAATCTGCCATCTCCAAAAACAAGTGAGTGACCTTCAAGCACAACTGGCCAAGGCACAAGCTGAGGTTGTCAACATGCAATGCCAGCAAGCAAACCTTGTAGCACTGCTCATGGAAATGGCGAAACCCGATCACCATGGACAGGGCTCGCCGGATCAACAACCACTCGATCATCACAACTTCATCACCAGCAGCCCTCTTCCCCACAGCAACATACTCAATCAGACCAACTTGAGCTTCCTTGATGATCATAACTCTGCTCTAGGCTCATTCTGGGAATTACCACTCTGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

237

Amino Acids

25.8

Weight (kDa)

6.34

Isoelectric Point (pI)

60.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 61 - 158 3.8e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 333
AclWI GGATC 1 cut(s) 576
AcoI YGGCCR 1 cut(s) 462
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 401, 556
AgsI TTSAA 1 cut(s) 452
AjuI GAANNNNNNNTTGG 4 cut(s) 215, 247, 635, 667
AluBI AGCT 6 cut(s) 24, 140, 278, 344, 476, 651
AluI AGCT 6 cut(s) 24, 140, 278, 344, 476, 651
Alw26I GTCTC 2 cut(s) 339, 384
AlwI GGATC 1 cut(s) 576
AlwNI CAGNNNCTG 1 cut(s) 325
AoxI GGCC 2 cut(s) 372, 462
ApeKI GCWGC 3 cut(s) 188, 357, 606
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 3 cut(s) 262, 539, 592
AsuNHI GCTAGC 1 cut(s) 296
AvaII GGWCC 1 cut(s) 322
BalI TGGCCA 1 cut(s) 464
BanII GRGCYC 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 93
BbvCI CCTCAGC 1 cut(s) 477
BbvI GCAGC 3 cut(s) 175, 369, 618
BccI CCATC 1 cut(s) 432
BclI TGATCA 1 cut(s) 661
BcoDI GTCTC 2 cut(s) 339, 384
BfaI CTAG 3 cut(s) 21, 297, 677
BfuAI ACCTGC 1 cut(s) 333
BglII AGATCT 1 cut(s) 198
BisI GCNGC 3 cut(s) 189, 358, 607
BlsI GCNGC 3 cut(s) 190, 359, 608
BmcAI AGTACT 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 237
BmsI GCATC 1 cut(s) 337
BmtI GCTAGC 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 477
BpuEI CTTGAG 3 cut(s) 120, 223, 667
BsaI GGTCTC 1 cut(s) 384
BsaJI CCNNGG 2 cut(s) 465, 550
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 556
Bse1I ACTGG 2 cut(s) 375, 465
Bse3DI GCAATG 1 cut(s) 500
BseDI CCNNGG 2 cut(s) 465, 550
BseLI CCNNNNNNNGG 2 cut(s) 401, 556
BseMI GCAATG 1 cut(s) 500
BseMII CTCAG 4 cut(s) 137, 246, 321, 468
BseNI ACTGG 2 cut(s) 375, 465
BseRI GAGGAG 3 cut(s) 70, 96, 220
BseXI GCAGC 3 cut(s) 175, 369, 618
BsgI GTGCAG 2 cut(s) 237, 429
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 2 cut(s) 374, 464
BsiEI CGRYCG 1 cut(s) 98
BsiSI CCGG 1 cut(s) 566
BslI CCNNNNNNNGG 2 cut(s) 401, 556
BsmAI GTCTC 2 cut(s) 339, 384
BsnI GGCC 2 cut(s) 374, 464
Bso31I GGTCTC 1 cut(s) 384
Bsp1286I GDGCHC 1 cut(s) 563
Bsp143I GATC 6 cut(s) 95, 198, 544, 568, 583, 661
Bsp19I CCATGG 1 cut(s) 550
BspANI GGCC 2 cut(s) 374, 464
BspCNI CTCAG 4 cut(s) 136, 247, 322, 469
BspLI GGNNCC 1 cut(s) 237
BspMI ACCTGC 1 cut(s) 333
BspOI GCTAGC 1 cut(s) 300
BspPI GGATC 1 cut(s) 576
BspTNI GGTCTC 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 500
BsrI ACTGG 2 cut(s) 375, 465
BssECI CCNNGG 2 cut(s) 465, 550
BssMI GATC 6 cut(s) 95, 198, 544, 568, 583, 661
BssT1I CCWWGG 2 cut(s) 465, 550
Bst4CI ACNGT 1 cut(s) 41
Bst6I CTCTTC 2 cut(s) 88, 618
BstAPI GCANNNNNTGC 1 cut(s) 325
BstC8I GCNNGC 6 cut(s) 193, 261, 298, 500, 504, 563
BstDEI CTNAG 4 cut(s) 123, 255, 330, 477
BstDSI CCRYGG 1 cut(s) 550
BstKTI GATC 6 cut(s) 98, 201, 547, 571, 586, 664
BstMAI GTCTC 2 cut(s) 339, 384
BstMBI GATC 6 cut(s) 95, 198, 544, 568, 583, 661
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 3 cut(s) 325, 461, 499
BstNSI RCATGY 1 cut(s) 493
BstV1I GCAGC 3 cut(s) 175, 369, 618
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BsuRI GGCC 2 cut(s) 374, 464
BtgI CCRYGG 1 cut(s) 550
BtsI GCAGTG 2 cut(s) 357, 518
BtsIMutI CAGTG 4 cut(s) 12, 357, 382, 518
BveI ACCTGC 1 cut(s) 333
Cac8I GCNNGC 6 cut(s) 193, 261, 298, 500, 504, 563
CaiI CAGNNNCTG 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 42
CviAII CATG 5 cut(s) 361, 490, 526, 551, 708
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 4 cut(s) 123, 255, 330, 477
DpnI GATC 6 cut(s) 97, 200, 546, 570, 585, 663
DpnII GATC 6 cut(s) 95, 198, 544, 568, 583, 661
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 2 cut(s) 88, 618
EarI CTCTTC 2 cut(s) 88, 618
Eco130I CCWWGG 2 cut(s) 465, 550
Eco24I GRGCYC 1 cut(s) 563
Eco31I GGTCTC 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 322
EcoT14I CCWWGG 2 cut(s) 465, 550
EcoT38I GRGCYC 1 cut(s) 563
ErhI CCWWGG 2 cut(s) 465, 550
FaeI CATG 5 cut(s) 364, 493, 529, 554, 711
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FatI CATG 5 cut(s) 360, 489, 525, 550, 707
FbaI TGATCA 1 cut(s) 661
Fnu4HI GCNGC 3 cut(s) 189, 358, 607
FriOI GRGCYC 1 cut(s) 563
Fsp4HI GCNGC 3 cut(s) 189, 358, 607
FspBI CTAG 3 cut(s) 21, 297, 677
GluI GCNGC 3 cut(s) 189, 358, 607
HaeIII GGCC 2 cut(s) 374, 464
HapII CCGG 1 cut(s) 566
Hin1II CATG 5 cut(s) 364, 493, 529, 554, 711
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 4 cut(s) 127, 285, 332, 384
HpaII CCGG 1 cut(s) 566
HphI GGTGA 3 cut(s) 262, 539, 592
Hpy166II GTNNAC 2 cut(s) 270, 487
Hpy188I TCNGA 4 cut(s) 126, 256, 389, 639
Hpy188III TCNNGA 3 cut(s) 93, 202, 703
Hpy8I GTNNAC 2 cut(s) 270, 487
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 8 cut(s) 53, 195, 218, 319, 350, 380, 410, 493
HpyF10VI GCNNNNNNNGC 3 cut(s) 325, 461, 499
HpyF3I CTNAG 4 cut(s) 123, 255, 330, 477
Hsp92II CATG 5 cut(s) 364, 493, 529, 554, 711
Ksp22I TGATCA 1 cut(s) 661
Kzo9I GATC 6 cut(s) 95, 198, 544, 568, 583, 661
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 3 cut(s) 175, 369, 618
LweI GCATC 1 cut(s) 337
MaeI CTAG 3 cut(s) 21, 297, 677
MaeIII GTNAC 1 cut(s) 443
MalI GATC 6 cut(s) 97, 200, 546, 570, 585, 663
MboI GATC 6 cut(s) 95, 198, 544, 568, 583, 661
MboII GAAGA 6 cut(s) 75, 78, 81, 93, 222, 605
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 563
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 1 cut(s) 692
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 3 cut(s) 121, 294, 341
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 9 cut(s) 67, 91, 117, 198, 258, 262, 364, 472, 621
Mox20I TGGCCA 1 cut(s) 464
MscI TGGCCA 1 cut(s) 464
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 530
Msp20I TGGCCA 1 cut(s) 464
MspI CCGG 1 cut(s) 566
MwoI GCNNNNNNNGC 3 cut(s) 325, 461, 499
NcoI CCATGG 1 cut(s) 550
NdeII GATC 6 cut(s) 95, 198, 544, 568, 583, 661
NheI GCTAGC 1 cut(s) 296
NlaIII CATG 5 cut(s) 364, 493, 529, 554, 711
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 443
NspI RCATGY 1 cut(s) 493
PfeI GAWTC 1 cut(s) 384
PkrI GCNGC 3 cut(s) 190, 359, 608
Ple19I CGATCG 1 cut(s) 98
PleI GAGTC 3 cut(s) 121, 293, 340
PpsI GAGTC 3 cut(s) 121, 293, 340
PpuMI RGGWCCY 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 322
PspPPI RGGWCCY 1 cut(s) 322
PstNI CAGNNNCTG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 198
PvuI CGATCG 1 cut(s) 98
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 530
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 3 cut(s) 189, 358, 607
Sau3AI GATC 6 cut(s) 95, 198, 544, 568, 583, 661
Sau96I GGNCC 1 cut(s) 322
ScaI AGTACT 1 cut(s) 43
SchI GAGTC 3 cut(s) 121, 294, 341
SduI GDGCHC 1 cut(s) 563
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 3 cut(s) 135, 202, 646
SmoI CTYRAG 3 cut(s) 135, 202, 646
Sse9I AATT 1 cut(s) 692
SspMI CTAG 3 cut(s) 21, 297, 677
StyI CCWWGG 2 cut(s) 465, 550
TaaI ACNGT 1 cut(s) 41
TaqI TCGA 2 cut(s) 283, 582
TasI AATT 1 cut(s) 692
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 1 cut(s) 384
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 4 cut(s) 19, 357, 382, 525
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 3 cut(s) 188, 357, 606
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 1 cut(s) 586
TspRI CASTG 4 cut(s) 19, 357, 382, 525
VpaK11BI GGWCC 1 cut(s) 322
XceI RCATGY 1 cut(s) 493
XspI CTAG 3 cut(s) 21, 297, 677
ZrmI AGTACT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.