RchiOBHm_Chr1g0364081

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004073
Physical Location & Seq
Reverse (-)
55352255 .. 55353451
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58878

Sequence Viewer

Length: 681 bp
ATGGAATTCAATGCCAACACTACTGCTACTACTAAAACACCGCCTTCAAGTTTCACTTACTCTCCATTGACATCTCCTTCTTCTTCTCCAATGATATCTTCTTCTCCTGCCACCTCTCGTACTACTTCAGCTCGACCACCACTGCCGCCGCCACCTGTAGTTGTTAGCCCATGCGCCGCCTGCAAGATCCTTCGGCGCCGATGTGTGGAGAGGTGTGTTTTAGCTCCATATTTCCCTCCTTCCGATCCTATAAAGTTCACTACTGCCCATAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGACCTTCCGGAATCTCAGAGGGCAGATGCAGTGAGCAGCATGGTTTACGAAGCCAATGCCAGGCTTAGAGACCCGGTGTATGGCTGCGCTGGAGCAATTTTCAGTCTTCAGAAACAAGTCACTGAGCTCCAATCCCAACTAGCCAAGGCCCAAGCTGAGCTCATCAACATGCAGAGCCAGCAAGGCAATTTGGTTGCCCTAATTTGCATGAACATGAGTACTACTACTGCTACCAACACACAGCAATCTAAAGAAGCAGCAGTAGTACCCATTTTGCAGCAGCAACAATATTCGAATTTCAATATCGATACGAGTTGTTTTCTTGATGAGAACAACCTGGGCTCTGCTGACTGGGAACCTCTTTGGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

226

Amino Acids

24.61

Weight (kDa)

7.53

Isoelectric Point (pI)

73.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 57 - 154 1.7e-40 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 195
AccIII TCCGGA 1 cut(s) 316
AciI CCGC 4 cut(s) 41, 146, 149, 177
AclWI GGATC 2 cut(s) 181, 239
AcsI RAATTY 2 cut(s) 5, 604
AcuI CTGAAG 2 cut(s) 111, 401
AcyI GRCGYC 1 cut(s) 196
AfaI GTAC 3 cut(s) 121, 529, 576
AfiI CCNNNNNNNGG 3 cut(s) 205, 369, 389
AgsI TTSAA 3 cut(s) 10, 48, 610
AjiI CACGTC 1 cut(s) 678
AjnI CCWGG 2 cut(s) 368, 645
AjuI GAANNNNNNNTTGG 2 cut(s) 82, 114
AluBI AGCT 5 cut(s) 131, 224, 436, 464, 469
AluI AGCT 5 cut(s) 131, 224, 436, 464, 469
Alw21I GWGCWC 2 cut(s) 438, 471
Alw26I GTCTC 1 cut(s) 372
AlwI GGATC 2 cut(s) 181, 239
Aor13HI TCCGGA 1 cut(s) 316
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 5 cut(s) 345, 393, 566, 586, 589
ApoI RAATTY 2 cut(s) 5, 604
AspLEI GCGC 3 cut(s) 176, 198, 398
AspS9I GGNCC 2 cut(s) 310, 457
AsuC2I CCSGG 1 cut(s) 383
AsuII TTCGAA 1 cut(s) 602
AvaII GGWCC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 195
BanII GRGCYC 3 cut(s) 438, 471, 653
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 2 cut(s) 438, 471
BbvI GCAGC 5 cut(s) 357, 380, 578, 598, 601
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BciT130I CCWGG 2 cut(s) 370, 647
BcnI CCSGG 1 cut(s) 383
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 1 cut(s) 449
BfmI CTRYAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 199
BglI GCCNNNNNGGC 1 cut(s) 492
BisI GCNGC 8 cut(s) 146, 149, 177, 346, 394, 567, 587, 590
BlpI GCTNAGC 1 cut(s) 465
BlsI GCNGC 8 cut(s) 147, 150, 178, 347, 395, 568, 588, 591
BmcAI AGTACT 1 cut(s) 529
Bme1390I CCNGG 3 cut(s) 370, 383, 647
Bme18I GGWCC 1 cut(s) 310
BmgBI CACGTC 1 cut(s) 678
BmgT120I GGNCC 2 cut(s) 310, 457
BmiI GGNNCC 3 cut(s) 197, 283, 666
BmrFI CCNGG 3 cut(s) 370, 383, 647
BmrI ACTGGG 1 cut(s) 670
BmsI GCATC 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 407
BpmI CTGGAG 1 cut(s) 420
Bpu1102I GCTNAGC 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 383
Bsa29I ATCGAT 1 cut(s) 615
BsaHI GRCGYC 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 372
BsaJI CCNNGG 2 cut(s) 453, 646
BsaWI WCCGGW 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 369, 389
Bse1I ACTGG 1 cut(s) 665
BseAI TCCGGA 1 cut(s) 316
BseBI CCWGG 2 cut(s) 370, 647
BseCI ATCGAT 1 cut(s) 615
BseDI CCNNGG 2 cut(s) 453, 646
BseLI CCNNNNNNNGG 3 cut(s) 205, 369, 389
BseMII CTCAG 3 cut(s) 338, 423, 456
BseNI ACTGG 1 cut(s) 665
BseXI GCAGC 5 cut(s) 357, 380, 578, 598, 601
BshFI GGCC 1 cut(s) 458
BshNI GGYRCC 1 cut(s) 195
BshVI ATCGAT 1 cut(s) 615
BsiHKAI GWGCWC 2 cut(s) 438, 471
BsiSI CCGG 2 cut(s) 317, 383
BslI CCNNNNNNNGG 3 cut(s) 205, 369, 389
BsmAI GTCTC 1 cut(s) 372
BsnI GGCC 1 cut(s) 458
Bso31I GGTCTC 1 cut(s) 372
Bsp119I TTCGAA 1 cut(s) 602
Bsp1286I GDGCHC 3 cut(s) 438, 471, 653
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 2 cut(s) 186, 244
Bsp1720I GCTNAGC 1 cut(s) 465
BspACI CCGC 4 cut(s) 41, 146, 149, 177
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 3 cut(s) 337, 424, 457
BspDI ATCGAT 1 cut(s) 615
BspEI TCCGGA 1 cut(s) 316
BspLI GGNNCC 3 cut(s) 197, 283, 666
BspPI GGATC 2 cut(s) 181, 239
BspT104I TTCGAA 1 cut(s) 602
BspT107I GGYRCC 1 cut(s) 195
BspTNI GGTCTC 1 cut(s) 372
BsrI ACTGG 1 cut(s) 665
BssECI CCNNGG 2 cut(s) 453, 646
BssMI GATC 2 cut(s) 186, 244
BssNI GRCGYC 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 2 cut(s) 370, 647
BstACI GRCGYC 1 cut(s) 196
BstBI TTCGAA 1 cut(s) 602
BstC8I GCNNGC 3 cut(s) 181, 286, 488
BstDEI CTNAG 4 cut(s) 324, 374, 432, 465
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 3 cut(s) 176, 198, 398
BstKTI GATC 2 cut(s) 189, 247
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 2 cut(s) 186, 244
BstMWI GCNNNNNNNGC 3 cut(s) 180, 487, 492
BstNI CCWGG 2 cut(s) 370, 647
BstNSI RCATGY 1 cut(s) 481
BstSCI CCNGG 3 cut(s) 368, 381, 645
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 5 cut(s) 357, 380, 578, 598, 601
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
Bsu15I ATCGAT 1 cut(s) 615
BsuRI GGCC 1 cut(s) 458
BsuTUI ATCGAT 1 cut(s) 615
BtrI CACGTC 1 cut(s) 678
BtsI GCAGTG 2 cut(s) 140, 345
BtsIMutI CAGTG 3 cut(s) 140, 345, 429
Cac8I GCNNGC 3 cut(s) 181, 286, 488
CfoI GCGC 3 cut(s) 176, 198, 398
Cfr13I GGNCC 2 cut(s) 310, 457
ClaI ATCGAT 1 cut(s) 615
Csp6I GTAC 3 cut(s) 120, 528, 575
CviAII CATG 5 cut(s) 171, 349, 478, 517, 523
CviQI GTAC 3 cut(s) 120, 528, 575
DdeI CTNAG 4 cut(s) 324, 374, 432, 465
DinI GGCGCC 1 cut(s) 197
DpnI GATC 2 cut(s) 188, 246
DpnII GATC 2 cut(s) 186, 244
Ecl136II GAGCTC 2 cut(s) 436, 469
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 3 cut(s) 438, 471, 653
Eco31I GGTCTC 1 cut(s) 372
Eco32I GATATC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 310
Eco53kI GAGCTC 2 cut(s) 436, 469
Eco57I CTGAAG 2 cut(s) 111, 401
EcoICRI GAGCTC 2 cut(s) 436, 469
EcoO109I RGGNCCY 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 5
EcoRII CCWGG 2 cut(s) 368, 645
EcoRV GATATC 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 3 cut(s) 438, 471, 653
EgeI GGCGCC 1 cut(s) 197
EheI GGCGCC 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 5 cut(s) 174, 352, 481, 520, 526
FaiI YATR 9 cut(s) 172, 229, 251, 270, 350, 390, 479, 518, 524
FalI AAGNNNNNCTT 2 cut(s) 40, 72
FatI CATG 5 cut(s) 170, 348, 477, 516, 522
Fnu4HI GCNGC 8 cut(s) 146, 149, 177, 346, 394, 567, 587, 590
FriOI GRGCYC 3 cut(s) 438, 471, 653
Fsp4HI GCNGC 8 cut(s) 146, 149, 177, 346, 394, 567, 587, 590
FspBI CTAG 1 cut(s) 449
GlaI GCGC 3 cut(s) 175, 197, 397
GluI GCNGC 8 cut(s) 146, 149, 177, 346, 394, 567, 587, 590
GsuI CTGGAG 1 cut(s) 420
HaeII RGCGCY 1 cut(s) 199
HaeIII GGCC 1 cut(s) 458
HapII CCGG 2 cut(s) 317, 383
HhaI GCGC 3 cut(s) 176, 198, 398
Hin1I GRCGYC 1 cut(s) 196
Hin1II CATG 5 cut(s) 174, 352, 481, 520, 526
Hin6I GCGC 3 cut(s) 174, 196, 396
HinP1I GCGC 3 cut(s) 174, 196, 396
HinfI GANTC 2 cut(s) 273, 320
HpaII CCGG 2 cut(s) 317, 383
Hpy166II GTNNAC 2 cut(s) 258, 355
Hpy188I TCNGA 3 cut(s) 244, 327, 420
Hpy188III TCNNGA 2 cut(s) 317, 632
Hpy8I GTNNAC 2 cut(s) 258, 355
HpyAV CCTTC 5 cut(s) 54, 87, 200, 249, 323
HpyCH4IV ACGT 1 cut(s) 677
HpyCH4V TGCA 6 cut(s) 183, 307, 338, 481, 516, 586
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 487, 492
HpyF3I CTNAG 4 cut(s) 324, 374, 432, 465
HpySE526I ACGT 1 cut(s) 677
Hsp92I GRCGYC 1 cut(s) 196
Hsp92II CATG 5 cut(s) 174, 352, 481, 520, 526
HspAI GCGC 3 cut(s) 174, 196, 396
KasI GGCGCC 1 cut(s) 195
Kpn2I TCCGGA 1 cut(s) 316
Kzo9I GATC 2 cut(s) 186, 244
LmnI GCTCC 4 cut(s) 229, 281, 401, 441
Lsp1109I GCAGC 5 cut(s) 357, 380, 578, 598, 601
LweI GCATC 1 cut(s) 325
MaeI CTAG 1 cut(s) 449
MaeII ACGT 1 cut(s) 677
MaeIII GTNAC 1 cut(s) 427
MalI GATC 2 cut(s) 188, 246
MboI GATC 2 cut(s) 186, 244
MboII GAAGA 5 cut(s) 72, 75, 90, 93, 407
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 3 cut(s) 438, 471, 653
MluCI AATT 5 cut(s) 5, 405, 496, 510, 604
Mly113I GGCGCC 1 cut(s) 196
MlyI GAGTC 1 cut(s) 282
MnlI CCTC 5 cut(s) 124, 204, 246, 321, 678
MroI TCCGGA 1 cut(s) 316
MslI CAYNNNNRTG 2 cut(s) 476, 521
MspI CCGG 2 cut(s) 317, 383
MspR9I CCNGG 3 cut(s) 370, 383, 647
MvaI CCWGG 2 cut(s) 370, 647
MwoI GCNNNNNNNGC 3 cut(s) 180, 487, 492
NarI GGCGCC 1 cut(s) 196
NciI CCSGG 1 cut(s) 383
NdeII GATC 2 cut(s) 186, 244
NlaIII CATG 5 cut(s) 174, 352, 481, 520, 526
NlaIV GGNNCC 3 cut(s) 197, 283, 666
NmuCI GTSAC 1 cut(s) 427
NspI RCATGY 1 cut(s) 481
NspV TTCGAA 1 cut(s) 602
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 8 cut(s) 147, 150, 178, 347, 395, 568, 588, 591
PleI GAGTC 1 cut(s) 281
PluTI GGCGCC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 281
PpuMI RGGWCCY 1 cut(s) 310
Psp124BI GAGCTC 2 cut(s) 438, 471
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 2 cut(s) 368, 645
PspGI CCWGG 2 cut(s) 368, 645
PspN4I GGNNCC 3 cut(s) 197, 283, 666
PspPI GGNCC 2 cut(s) 310, 457
PspPPI RGGWCCY 1 cut(s) 310
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 3 cut(s) 121, 529, 576
RsaNI GTAC 3 cut(s) 120, 528, 575
RseI CAYNNNNRTG 2 cut(s) 476, 521
SacI GAGCTC 2 cut(s) 438, 471
SatI GCNGC 8 cut(s) 146, 149, 177, 346, 394, 567, 587, 590
Sau3AI GATC 2 cut(s) 186, 244
Sau96I GGNCC 2 cut(s) 310, 457
ScaI AGTACT 1 cut(s) 529
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 3 cut(s) 370, 383, 647
SduI GDGCHC 3 cut(s) 438, 471, 653
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 156
SfoI GGCGCC 1 cut(s) 197
SfuI TTCGAA 1 cut(s) 602
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 2 cut(s) 476, 521
Sse9I AATT 5 cut(s) 5, 405, 496, 510, 604
SsiI CCGC 4 cut(s) 41, 146, 149, 177
SspDI GGCGCC 1 cut(s) 195
SspI AATATT 1 cut(s) 599
SspMI CTAG 1 cut(s) 449
SstI GAGCTC 2 cut(s) 438, 471
StyD4I CCNGG 3 cut(s) 368, 381, 645
StyI CCWWGG 1 cut(s) 453
TaiI ACGT 1 cut(s) 680
TaqI TCGA 3 cut(s) 133, 602, 615
TasI AATT 5 cut(s) 5, 405, 496, 510, 604
TatI WGTACW 1 cut(s) 527
TauI GCSGC 3 cut(s) 148, 151, 179
TfiI GAWTC 1 cut(s) 320
TscAI CASTG 3 cut(s) 147, 345, 436
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 5 cut(s) 345, 393, 566, 586, 589
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 1 cut(s) 533
TspRI CASTG 3 cut(s) 147, 345, 436
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 2 cut(s) 5, 604
XceI RCATGY 1 cut(s) 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XspI CTAG 1 cut(s) 449
ZrmI AGTACT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.