AT1G08080

carbonic anhydrase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006048
Physical Location & Seq
Reverse (-)
2516991 .. 2518611
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08080.1

Sequence Viewer

Length: 828 bp
ATGGTGAACTACTCATCAATCAGTTGCATCTTCTTTGTGGCTCTGTTTAGTATTTTCACAATTGTTTCGATTTCGAGTGCTGCTTCAAGTCACGGAGAAGTTGAGGACGAACGCGAGTTTAACTACAAGAAGAACGATGAGAAGGGGCCAGAGAGATGGGGAGAACTTAAACCGGAATGGGAAATGTGTGGAAAAGGAGAGATGCAATCTCCCATAGATCTTATGAACGAGAGAGTTAACATTGTTTCTCATCTTGGAAGGCTTAATAGAGACTATAATCCTTCAAATGCAACTCTTAAGAACAGAGGCCATGACATCATGTTAAAATTTGAAGATGGAGCAGGAACTATTAAGATCAATGGTTTTGAATATGAACTTCAACAGCTTCACTGGCACTCTCCGTCTGAACATACTATTAATGGAAGAAGGTTTGCACTTGAGCTGCATATGGTTCACGAAGGCAGGAATAGAAGAATGGCTGTTGTGACTGTGTTGTACAAGATCGGAAGAGCAGATACTTTTATCAGATCGTTGGAGAAAGAATTAGAGGGCATTGCTGAAATGGAGGAGGCTGAGAAAAATGTAGGAATGATTGATCCCACCAAAATTAAGATCGGAAGCAGAAAATATTACAGATACACTGGTTCACTTACCACTCCTCCTTGCACTCAAAACGTTACTTGGAGCGTCGTTAGAAAGGTTAGGACCGTGACAAGAAAACAAGTGAAGCTCCTCCGCGTGGCAGTGCACGATGATGCTAATTCGAATGCGAGGCCGGTTCAACCAACCAACAAGCGCATAGTGCACTTATACAGACCAATAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0008150 GO:0010033 GO:0010037 GO:0016020 GO:0042221 GO:0042493 GO:0050896 GO:0072347 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Carb_anhydrase

Protein Analysis

275

Amino Acids

31.62

Weight (kDa)

9.14

Isoelectric Point (pI)

29.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Carb_anhydrase PF00194 49 - 269 1e-43 Eukaryotic-type carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 114, 738
AciI CCGC 1 cut(s) 736
AclI AACGTT 1 cut(s) 675
AclWI GGATC 1 cut(s) 590
AcsI RAATTY 1 cut(s) 326
AfaI GTAC 1 cut(s) 497
AfiI CCNNNNNNNGG 1 cut(s) 739
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 6 cut(s) 87, 285, 332, 368, 380, 782
AluBI AGCT 3 cut(s) 385, 442, 730
AluI AGCT 3 cut(s) 385, 442, 730
Alw21I GWGCWC 2 cut(s) 750, 807
Alw26I GTCTC 1 cut(s) 264
Alw44I GTGCAC 2 cut(s) 746, 803
AlwI GGATC 1 cut(s) 590
AoxI GGCC 3 cut(s) 146, 307, 773
ApaLI GTGCAC 2 cut(s) 746, 803
ApeKI GCWGC 2 cut(s) 80, 442
ApoI RAATTY 1 cut(s) 326
AseI ATTAAT 1 cut(s) 417
AspLEI GCGC 1 cut(s) 798
AspS9I GGNCC 2 cut(s) 146, 705
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 764
AvaII GGWCC 1 cut(s) 705
BaeGI GKGCMC 2 cut(s) 750, 807
BaeI ACNNNNGTAYC 2 cut(s) 628, 661
BarI GAAGNNNNNNTAC 2 cut(s) 499, 531
Bbv12I GWGCWC 2 cut(s) 750, 807
BbvI GCAGC 2 cut(s) 67, 429
BccI CCATC 2 cut(s) 150, 329
BcoDI GTCTC 1 cut(s) 264
BfrI CTTAAG 1 cut(s) 296
BglII AGATCT 1 cut(s) 217
BisI GCNGC 2 cut(s) 81, 443
BlsI GCNGC 2 cut(s) 82, 444
Bme18I GGWCC 1 cut(s) 705
BmgT120I GGNCC 2 cut(s) 146, 705
BmiI GGNNCC 1 cut(s) 147
BmsI GCATC 3 cut(s) 36, 192, 745
Bpu14I TTCGAA 1 cut(s) 764
BpuEI CTTGAG 1 cut(s) 458
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bsc4I CCNNNNNNNGG 1 cut(s) 739
Bse118I RCCGGY 1 cut(s) 775
Bse1I ACTGG 2 cut(s) 395, 646
Bse3DI GCAATG 1 cut(s) 552
BseLI CCNNNNNNNGG 1 cut(s) 739
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 2 cut(s) 395, 646
BseRI GAGGAG 3 cut(s) 581, 648, 722
BseSI GKGCMC 2 cut(s) 750, 807
BseXI GCAGC 2 cut(s) 67, 429
Bsh1236I CGCG 2 cut(s) 114, 738
BshFI GGCC 3 cut(s) 148, 309, 775
BsiHKAI GWGCWC 2 cut(s) 750, 807
BsiSI CCGG 2 cut(s) 173, 776
BslI CCNNNNNNNGG 1 cut(s) 739
BsmAI GTCTC 1 cut(s) 264
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 3 cut(s) 148, 309, 775
Bsp119I TTCGAA 1 cut(s) 764
Bsp1286I GDGCHC 2 cut(s) 750, 807
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 6 cut(s) 217, 354, 501, 527, 595, 612
BspACI CCGC 1 cut(s) 736
BspANI GGCC 3 cut(s) 148, 309, 775
BspCNI CTCAG 1 cut(s) 565
BspFNI CGCG 2 cut(s) 114, 738
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 1 cut(s) 590
BspQI GCTCTTC 1 cut(s) 502
BspT104I TTCGAA 1 cut(s) 764
BspTI CTTAAG 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 552
BsrFI RCCGGY 1 cut(s) 775
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 2 cut(s) 395, 646
BssAI RCCGGY 1 cut(s) 775
BssMI GATC 6 cut(s) 217, 354, 501, 527, 595, 612
Bst4CI ACNGT 2 cut(s) 490, 709
Bst6I CTCTTC 1 cut(s) 502
BstAFI CTTAAG 1 cut(s) 296
BstAUI TGTACA 1 cut(s) 495
BstBI TTCGAA 1 cut(s) 764
BstDEI CTNAG 1 cut(s) 573
BstFNI CGCG 2 cut(s) 114, 738
BstHHI GCGC 1 cut(s) 798
BstKTI GATC 6 cut(s) 220, 357, 504, 530, 598, 615
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 6 cut(s) 217, 354, 501, 527, 595, 612
BstMWI GCNNNNNNNGC 2 cut(s) 391, 802
BstSLI GKGCMC 2 cut(s) 750, 807
BstUI CGCG 2 cut(s) 114, 738
BstV1I GCAGC 2 cut(s) 67, 429
BstX2I RGATCY 1 cut(s) 217
BstXI CCANNNNNNTGG 1 cut(s) 156
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 3 cut(s) 148, 309, 775
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 3 cut(s) 388, 639, 750
CfoI GCGC 1 cut(s) 798
Cfr10I RCCGGY 1 cut(s) 775
Cfr13I GGNCC 2 cut(s) 146, 705
CseI GACGC 1 cut(s) 676
Csp6I GTAC 1 cut(s) 496
CviAII CATG 2 cut(s) 311, 319
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 1 cut(s) 573
DpnI GATC 6 cut(s) 219, 356, 503, 529, 597, 614
DpnII GATC 6 cut(s) 217, 354, 501, 527, 595, 612
Eam1104I CTCTTC 1 cut(s) 502
EarI CTCTTC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 705
FaeI CATG 2 cut(s) 314, 322
FatI CATG 2 cut(s) 310, 318
FauNDI CATATG 1 cut(s) 447
Fnu4HI GCNGC 2 cut(s) 81, 443
Fsp4HI GCNGC 2 cut(s) 81, 443
GlaI GCGC 1 cut(s) 797
GluI GCNGC 2 cut(s) 81, 443
HaeIII GGCC 3 cut(s) 148, 309, 775
HapII CCGG 2 cut(s) 173, 776
HgaI GACGC 1 cut(s) 676
HhaI GCGC 1 cut(s) 798
Hin1II CATG 2 cut(s) 314, 322
Hin6I GCGC 1 cut(s) 796
HinP1I GCGC 1 cut(s) 796
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HpaI GTTAAC 1 cut(s) 238
HpaII CCGG 2 cut(s) 173, 776
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 6 cut(s) 7, 238, 454, 647, 748, 805
Hpy188I TCNGA 4 cut(s) 406, 506, 527, 617
Hpy188III TCNNGA 1 cut(s) 455
Hpy8I GTNNAC 6 cut(s) 7, 238, 454, 647, 748, 805
Hpy99I CGWCG 1 cut(s) 692
HpyAV CCTTC 5 cut(s) 136, 252, 291, 420, 452
HpyCH4III ACNGT 2 cut(s) 490, 709
HpyCH4IV ACGT 1 cut(s) 675
HpyCH4V TGCA 8 cut(s) 27, 205, 290, 434, 445, 666, 748, 805
HpyF10VI GCNNNNNNNGC 2 cut(s) 391, 802
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 1 cut(s) 675
Hsp92II CATG 2 cut(s) 314, 322
HspAI GCGC 1 cut(s) 796
KspAI GTTAAC 1 cut(s) 238
Kzo9I GATC 6 cut(s) 217, 354, 501, 527, 595, 612
LguI GCTCTTC 1 cut(s) 502
LmnI GCTCC 3 cut(s) 338, 684, 735
LpnPI CCDG 7 cut(s) 162, 186, 327, 376, 448, 627, 789
Lsp1109I GCAGC 2 cut(s) 67, 429
LweI GCATC 3 cut(s) 36, 192, 745
MaeII ACGT 1 cut(s) 675
MaeIII GTNAC 4 cut(s) 89, 484, 676, 709
MalI GATC 6 cut(s) 219, 356, 503, 529, 597, 614
MboI GATC 6 cut(s) 217, 354, 501, 527, 595, 612
MboII GAAGA 6 cut(s) 22, 142, 344, 435, 483, 519
MfeI CAATTG 1 cut(s) 60
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 750, 807
MluCI AATT 5 cut(s) 60, 326, 542, 606, 760
MmeI TCCRAC 1 cut(s) 513
MnlI CCTC 8 cut(s) 97, 299, 541, 559, 562, 669, 743, 765
MslI CAYNNNNRTG 1 cut(s) 753
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 2 cut(s) 173, 776
MunI CAATTG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 772
MvnI CGCG 2 cut(s) 114, 738
MwoI GCNNNNNNNGC 2 cut(s) 391, 802
NdeI CATATG 1 cut(s) 447
NdeII GATC 6 cut(s) 217, 354, 501, 527, 595, 612
NlaIII CATG 2 cut(s) 314, 322
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 3 cut(s) 89, 484, 709
NspV TTCGAA 1 cut(s) 764
PciSI GCTCTTC 1 cut(s) 502
PctI GAATGC 1 cut(s) 772
PkrI GCNGC 2 cut(s) 82, 444
PshBI ATTAAT 1 cut(s) 417
Psp1406I AACGTT 1 cut(s) 675
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 146, 705
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
RseI CAYNNNNRTG 1 cut(s) 753
SapI GCTCTTC 1 cut(s) 502
SatI GCNGC 2 cut(s) 81, 443
Sau3AI GATC 6 cut(s) 217, 354, 501, 527, 595, 612
Sau96I GGNCC 2 cut(s) 146, 705
SduI GDGCHC 2 cut(s) 750, 807
SetI ASST 6 cut(s) 387, 431, 444, 678, 702, 732
SfaNI GCATC 3 cut(s) 36, 192, 745
SfuI TTCGAA 1 cut(s) 764
SinI GGWCC 1 cut(s) 705
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 2 cut(s) 296, 437
SmoI CTYRAG 2 cut(s) 296, 437
Sse9I AATT 5 cut(s) 60, 326, 542, 606, 760
SsiI CCGC 1 cut(s) 736
SspI AATATT 1 cut(s) 629
TaaI ACNGT 2 cut(s) 490, 709
TaiI ACGT 1 cut(s) 678
TaqI TCGA 3 cut(s) 68, 74, 764
TasI AATT 5 cut(s) 60, 326, 542, 606, 760
TatI WGTACW 1 cut(s) 495
TscAI CASTG 3 cut(s) 395, 646, 750
TseFI GTSAC 3 cut(s) 89, 484, 709
TseI GCWGC 2 cut(s) 80, 442
Tsp45I GTSAC 3 cut(s) 89, 484, 709
TspDTI ATGAA 2 cut(s) 239, 387
TspGWI ACGGA 2 cut(s) 108, 390
TspRI CASTG 3 cut(s) 395, 646, 750
Vha464I CTTAAG 1 cut(s) 296
VneI GTGCAC 2 cut(s) 746, 803
VpaK11BI GGWCC 1 cut(s) 705
VspI ATTAAT 1 cut(s) 417
XapI RAATTY 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.