Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006048

Physical Location & Seq

Genomic Coordinates Reverse (-)

13051711 .. 13053585

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1140500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGAAGTTTCCCACCCCAATATTATTTTACAGTTTCCTTATTGCCTTGGTATTGCTGAATTCTCGCCATGCAACATCTGAAGAAGTTGAAGATCAGAGGGAGTTTAACTATGAGGAAGACAGTGAGAAGGGACCGGTTCGATGGGGAGAGATACGCCAAGACTGGAGCATGTGCAGCAAGGGATCGATGCAGTCTCCGATTGATCTGTTAGATGACAGAGTCGAACTAGTGTCACATTTGGGGATACTTAAGAGTAACTACAGGCCTTGCAATGCCACTCTTAAGAATAGGGGGCATGATATGATGTTGAAATGGGAAGCTGATCCAGGATTTATACTATTAAACGGAACTTTATATAAACTGAAACAATGCCACTGGCACGCGTCTTCAGAACACACCATCAATGGCAAGAGGTTTGATTTAGAGGTGCATTTGGTTCATGAGAGCGCAACTGGAAATATTGCTGTGACTGGAATTCTTTATAGGATTGGAGCTCCTGATCCATTTTTGTCATCGATCATGGATTATTTAGCAGACGTCTCTGATACCACTGAAGACGAAGAAGTCGTTGGTATGGTTGATCCAAGGCAAATGAAAACAAGCAGCACAAAGTATTACAGATATATTGGCTCACTCACAACTCCTCCATGCACACAAAATGTTATCTGGACCATTGCTCGAGAGGTGAGCACTGTCTCAGAAGAACAAGTGAAAGCACTCCGAGTAGCTGTTCATGATGACTCAGACACTAATGCAAGACCAGTACAACCCAGAAACAGGCGGATAGTGCAACTTTATAGACAAACAGTAGAGGAAAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0010033 GO:0010037 GO:0016020 GO:0042221 GO:0042493 GO:0050896 GO:0072347 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

276

Amino Acids

31.51

Weight (kDa)

5.52

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	45 - 265	2.1e-43	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08080 AT2G28210 AT2G28210
fragaria_vesca	FvH4_3g31680 FvH4_3g31680 FvH4_3g31680 FvH4_3g31680
malus_domestica	MD03G1121900.v1.1 MD11G1140500.v1.1
prunus_persica	Prupe.6G104900_v2.0.a1
pyrus_communis	pycom11g11620
rosa_chinensis	RchiOBHm_Chr5g0056011 RchiOBHm_Chr5g0058391
rosa_laevigata	RLG00000035043 RLG00000035216
rosa_multiflora	Rmu_sc0000367.1_g000109
rosa_roxburghii	Rroxscaffold_1G00022170 Rroxscaffold_1G00024250
rosa_rugosa	Rorug05G0313500
rosa_samantha	Rh5AG368100 Rh5AG381000 Rh5BG378800 Rh5BG392600 Rh5CG416700 Rh5DG407800
rosa_wichuraiana	Rw5G034560 Rw5G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	566
AatII	GACGTC	1 cut(s)	543
AccII	CGCG	1 cut(s)	386
AciI	CCGC	1 cut(s)	784
AclWI	GGATC	4 cut(s)	193, 320, 497, 578
AcsI	RAATTY	2 cut(s)	61, 477
AcuI	CTGAAG	3 cut(s)	102, 375, 576
AcyI	GRCGYC	1 cut(s)	540
AfaI	GTAC	1 cut(s)	768
AfiI	CCNNNNNNNGG	1 cut(s)	780
AflII	CTTAAG	2 cut(s)	251, 284
AflIII	ACRYGT	1 cut(s)	384
AgeI	ACCGGT	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	92, 313
AhlI	ACTAGT	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	555, 587
AluBI	AGCT	3 cut(s)	323, 497, 731
AluI	AGCT	3 cut(s)	323, 497, 731
Alw21I	GWGCWC	2 cut(s)	499, 695
Alw26I	GTCTC	3 cut(s)	201, 547, 703
AlwI	GGATC	4 cut(s)	193, 320, 497, 578
Ama87I	CYCGRG	1 cut(s)	681
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	2 cut(s)	177, 606
ApoI	RAATTY	2 cut(s)	61, 477
AsiGI	ACCGGT	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	2 cut(s)	134, 672
AsuHPI	GGTGA	1 cut(s)	700
AvaI	CYCGRG	1 cut(s)	681
AvaII	GGWCC	2 cut(s)	134, 672
BanII	GRGCYC	1 cut(s)	499
BbsI	GAAGAC	3 cut(s)	126, 381, 564
Bbv12I	GWGCWC	2 cut(s)	499, 695
BbvI	GCAGC	2 cut(s)	189, 618
BccI	CCATC	2 cut(s)	138, 410
BciT130I	CCWGG	1 cut(s)	330
BciVI	GTATCC	1 cut(s)	240
BcoDI	GTCTC	3 cut(s)	201, 547, 703
BcuI	ACTAGT	1 cut(s)	229
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	262
BfrI	CTTAAG	2 cut(s)	251, 284
BfuI	GTATCC	1 cut(s)	240
BisI	GCNGC	2 cut(s)	178, 607
BlsI	GCNGC	2 cut(s)	179, 608
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	2 cut(s)	134, 672
BmeT110I	CYCGRG	1 cut(s)	681
BmgT120I	GGNCC	2 cut(s)	134, 672
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	180
BpiI	GAAGAC	3 cut(s)	126, 381, 564
BpmI	CTGGAG	1 cut(s)	187
Bsa29I	ATCGAT	2 cut(s)	188, 518
BsaHI	GRCGYC	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	48, 587
BsaWI	WCCGGW	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	631, 661
Bsc4I	CCNNNNNNNGG	1 cut(s)	780
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	5 cut(s)	170, 383, 460, 478, 764
Bse3DI	GCAATG	2 cut(s)	280, 675
BseBI	CCWGG	1 cut(s)	330
BseCI	ATCGAT	2 cut(s)	188, 518
BseDI	CCNNGG	2 cut(s)	48, 587
BseLI	CCNNNNNNNGG	1 cut(s)	780
BseMI	GCAATG	2 cut(s)	280, 675
BseMII	CTCAG	2 cut(s)	714, 759
BseNI	ACTGG	5 cut(s)	170, 383, 460, 478, 764
BseRI	GAGGAG	1 cut(s)	636
BseXI	GCAGC	2 cut(s)	189, 618
BsgI	GTGCAG	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	386
BshFI	GGCC	1 cut(s)	268
BshTI	ACCGGT	1 cut(s)	136
BshVI	ATCGAT	2 cut(s)	188, 518
BsiHKAI	GWGCWC	2 cut(s)	499, 695
BsiHKCI	CYCGRG	1 cut(s)	681
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	780
BsmAI	GTCTC	3 cut(s)	201, 547, 703
BsmBI	CGTCTC	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	268
BsoBI	CYCGRG	1 cut(s)	681
Bsp1286I	GDGCHC	2 cut(s)	499, 695
Bsp143I	GATC	7 cut(s)	94, 185, 205, 325, 502, 519, 583
BspACI	CCGC	1 cut(s)	784
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	2 cut(s)	713, 758
BspDI	ATCGAT	2 cut(s)	188, 518
BspFNI	CGCG	1 cut(s)	386
BspHI	TCATGA	2 cut(s)	442, 736
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	4 cut(s)	193, 320, 497, 578
BspTI	CTTAAG	2 cut(s)	251, 284
BsrDI	GCAATG	2 cut(s)	280, 675
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	5 cut(s)	170, 383, 460, 478, 764
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	48, 587
BssMI	GATC	7 cut(s)	94, 185, 205, 325, 502, 519, 583
BssNI	GRCGYC	1 cut(s)	540
BssT1I	CCWWGG	2 cut(s)	48, 587
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	4 cut(s)	35, 125, 697, 811
BstACI	GRCGYC	1 cut(s)	540
BstAFI	CTTAAG	2 cut(s)	251, 284
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	700, 745
BstFNI	CGCG	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	7 cut(s)	97, 188, 208, 328, 505, 522, 586
BstMAI	GTCTC	3 cut(s)	201, 547, 703
BstMBI	GATC	7 cut(s)	94, 185, 205, 325, 502, 519, 583
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 790
BstNI	CCWGG	1 cut(s)	330
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	262
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	2 cut(s)	189, 618
BstV2I	GAAGAC	3 cut(s)	126, 381, 564
Bsu15I	ATCGAT	2 cut(s)	188, 518
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	268
BsuTUI	ATCGAT	2 cut(s)	188, 518
BtsIMutI	CAGTG	4 cut(s)	130, 376, 552, 693
Cac8I	GCNNGC	1 cut(s)	384
CciI	TCATGA	2 cut(s)	442, 736
CfoI	GCGC	1 cut(s)	452
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	134, 672
ClaI	ATCGAT	2 cut(s)	188, 518
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	767
CspAI	ACCGGT	1 cut(s)	136
CviAII	CATG	7 cut(s)	71, 172, 299, 443, 523, 651, 737
CviJI	RGCY	5 cut(s)	268, 323, 497, 633, 731
CviKI_1	RGCY	5 cut(s)	268, 323, 497, 633, 731
CviQI	GTAC	1 cut(s)	767
DdeI	CTNAG	2 cut(s)	700, 745
DpnI	GATC	7 cut(s)	96, 187, 207, 327, 504, 521, 585
DpnII	GATC	7 cut(s)	94, 185, 205, 325, 502, 519, 583
DrdI	GACNNNNNNGTC	1 cut(s)	566
DseDI	GACNNNNNNGTC	1 cut(s)	566
EciI	GGCGGA	1 cut(s)	799
Ecl136II	GAGCTC	1 cut(s)	497
Eco130I	CCWWGG	2 cut(s)	48, 587
Eco147I	AGGCCT	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	499
Eco47I	GGWCC	2 cut(s)	134, 672
Eco53kI	GAGCTC	1 cut(s)	497
Eco57I	CTGAAG	3 cut(s)	102, 375, 576
Eco88I	CYCGRG	1 cut(s)	681
EcoICRI	GAGCTC	1 cut(s)	497
EcoRI	GAATTC	2 cut(s)	61, 477
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	2 cut(s)	48, 587
EcoT38I	GRGCYC	1 cut(s)	499
ErhI	CCWWGG	2 cut(s)	48, 587
Esp3I	CGTCTC	1 cut(s)	547
FaeI	CATG	7 cut(s)	74, 175, 302, 446, 526, 654, 740
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	7 cut(s)	70, 171, 298, 442, 522, 650, 736
Fnu4HI	GCNGC	2 cut(s)	178, 607
FriOI	GRGCYC	1 cut(s)	499
Fsp4HI	GCNGC	2 cut(s)	178, 607
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	2 cut(s)	178, 607
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	375
HhaI	GCGC	1 cut(s)	452
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	7 cut(s)	74, 175, 302, 446, 526, 654, 740
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HinfI	GANTC	2 cut(s)	222, 743
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	700
Hpy188I	TCNGA	8 cut(s)	82, 99, 201, 394, 547, 703, 725, 748
Hpy188III	TCNNGA	5 cut(s)	443, 500, 670, 683, 737
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	4 cut(s)	35, 125, 697, 811
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	8 cut(s)	74, 177, 193, 273, 433, 654, 758, 793
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 790
HpyF3I	CTNAG	2 cut(s)	700, 745
HpySE526I	ACGT	1 cut(s)	540
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	7 cut(s)	74, 175, 302, 446, 526, 654, 740
HspAI	GCGC	1 cut(s)	450
Kzo9I	GATC	7 cut(s)	94, 185, 205, 325, 502, 519, 583
LmnI	GCTCC	3 cut(s)	168, 494, 502
Lsp1109I	GCAGC	2 cut(s)	189, 618
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	3 cut(s)	234, 257, 469
MalI	GATC	7 cut(s)	96, 187, 207, 327, 504, 521, 585
MboI	GATC	7 cut(s)	94, 185, 205, 325, 502, 519, 583
MboII	GAAGA	7 cut(s)	95, 104, 131, 381, 569, 575, 716
MhlI	GDGCHC	2 cut(s)	499, 695
MluCI	AATT	3 cut(s)	61, 477, 823
MluI	ACGCGT	1 cut(s)	384
MlyI	GAGTC	2 cut(s)	231, 737
MnlI	CCTC	7 cut(s)	93, 109, 408, 421, 657, 679, 808
MseI	TTAA	4 cut(s)	108, 252, 285, 344
MspCI	CTTAAG	2 cut(s)	251, 284
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	2 cut(s)	177, 790
NdeII	GATC	7 cut(s)	94, 185, 205, 325, 502, 519, 583
NlaIII	CATG	7 cut(s)	74, 175, 302, 446, 526, 654, 740
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	234, 469
NspI	RCATGY	1 cut(s)	175
PaeR7I	CTCGAG	1 cut(s)	681
PagI	TCATGA	2 cut(s)	442, 736
PceI	AGGCCT	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PflFI	GACNNNGTC	1 cut(s)	221
PfoI	TCCNGGA	1 cut(s)	328
PinAI	ACCGGT	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	179, 608
PleI	GAGTC	2 cut(s)	230, 737
PpsI	GAGTC	2 cut(s)	230, 737
Psp124BI	GAGCTC	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	134, 672
PsyI	GACNNNGTC	1 cut(s)	221
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
SacI	GAGCTC	1 cut(s)	499
SaqAI	TTAA	4 cut(s)	108, 252, 285, 344
SatI	GCNGC	2 cut(s)	178, 607
Sau3AI	GATC	7 cut(s)	94, 185, 205, 325, 502, 519, 583
Sau96I	GGNCC	2 cut(s)	134, 672
SchI	GAGTC	2 cut(s)	231, 737
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	2 cut(s)	499, 695
SetI	ASST	7 cut(s)	325, 419, 432, 499, 543, 690, 733
SfaNI	GCATC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	262
Sfr274I	CTCGAG	1 cut(s)	681
SinI	GGWCC	2 cut(s)	134, 672
SlaI	CTCGAG	1 cut(s)	681
SmlI	CTYRAG	3 cut(s)	251, 284, 681
SmoI	CTYRAG	3 cut(s)	251, 284, 681
SpeI	ACTAGT	1 cut(s)	229
Sse9I	AATT	3 cut(s)	61, 477, 823
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	1 cut(s)	784
SspI	AATATT	2 cut(s)	24, 463
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	499
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	2 cut(s)	48, 587
TaaI	ACNGT	4 cut(s)	35, 125, 697, 811
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	5 cut(s)	142, 188, 225, 518, 682
TasI	AATT	3 cut(s)	61, 477, 823
TatI	WGTACW	1 cut(s)	766
Tru1I	TTAA	4 cut(s)	108, 252, 285, 344
Tru9I	TTAA	4 cut(s)	108, 252, 285, 344
TscAI	CASTG	4 cut(s)	130, 383, 559, 700
TseFI	GTSAC	2 cut(s)	234, 469
TseI	GCWGC	2 cut(s)	177, 606
Tsp45I	GTSAC	2 cut(s)	234, 469
TspDTI	ATGAA	3 cut(s)	431, 611, 725
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	4 cut(s)	130, 383, 559, 700
Tth111I	GACNNNGTC	1 cut(s)	221
Vha464I	CTTAAG	2 cut(s)	251, 284
VpaK11BI	GGWCC	2 cut(s)	134, 672
XapI	RAATTY	2 cut(s)	61, 477
XceI	RCATGY	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	681
XspI	CTAG	1 cut(s)	230
ZraI	GACGTC	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.