FvH4_3g31680

Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006048
Physical Location & Seq
Forward (+)
26117641 .. 26120212
2572 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31680.t3

Sequence Viewer

Length: 828 bp
ATGTTGAAGCTTTCCAGCCTATTAATCTTGTTTTGCAGCATCGTTCTTGTTTTGCATTCCTACCAAGTGACCTCACATGAAAATGAAGTTGAGGATGAGAGTGAGTTTAGTTATGACGAAAACAGTGAGAAGGGGCCTGCTAGATGGGGGAATATACGCCGCGAATGGAGCATGTGCAACAATGGATTGTTGCAGTCTCCGATCAATCTGTCAGATGACAGAGTTAATGTAATCTCAGATTTAGGGGCACTACAGGGTAGCTACAAGGCTTGTAATGCCACTCTTAAGAATAGAGGCCATGATATTATGTTGAAATGGCAAGCTGATGCAGGATATATTCCTATCAATGGAACACATTATAGCGTCAGACAATGCCACTGGCACTCACCTTCGGAACACAAAATCAATGGCAAGCAGTTTGATTTAGAAGCGCATATGGTTCATGATGGTCCCAATGGAAGCATCGCTGTTATCGGAATCCTGTATAAGATTGGAAAACCTGACCCATTTTTGACACAGATGATGGACTACATAGAAGACTTATCTGAGAGCAGTGGAGAAGAGAAGGTGATTGGTATGGTCGATCCAAAGCAAATAAAAACTGTCAGCACAAAGTACTACAGATATATAGGCTCTCTTACAATTCCTCCTTGCACACAAAACGTCCTCTGGAACCTTGTTGGAGAGGTGAGGACTGTCTCTAAAGAACAGGTCGAATTCCTCCGTGAGGCTGTTCACGATGAGTCGGAAACTAATGCAAGACCACTACAACCGATAAACACACGCTCAGTGAGACTCTATAATCCCAGTACAGAGGAACAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0008150 GO:0010033 GO:0010037 GO:0016020 GO:0042221 GO:0042493 GO:0050896 GO:0072347 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Carb_anhydrase

Protein Analysis

276

Amino Acids

31.17

Weight (kDa)

5.39

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Carb_anhydrase PF00194 45 - 246 6.9e-34 Eukaryotic-type carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 162
AciI CCGC 1 cut(s) 160
AclWI GGATC 1 cut(s) 578
AcsI RAATTY 1 cut(s) 716
AfaI GTAC 2 cut(s) 617, 811
AfiI CCNNNNNNNGG 2 cut(s) 347, 727
AflII CTTAAG 1 cut(s) 284
AgsI TTSAA 2 cut(s) 7, 313
AluBI AGCT 3 cut(s) 10, 261, 323
AluI AGCT 3 cut(s) 10, 261, 323
Alw26I GTCTC 3 cut(s) 201, 703, 787
AlwI GGATC 1 cut(s) 578
AoxI GGCC 2 cut(s) 134, 295
ApeKI GCWGC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 716
AseI ATTAAT 1 cut(s) 23
AspLEI GCGC 1 cut(s) 433
AspS9I GGNCC 2 cut(s) 134, 449
AsuHPI GGTGA 3 cut(s) 378, 580, 700
AvaII GGWCC 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 543
BbvI GCAGC 1 cut(s) 48
BccI CCATC 3 cut(s) 138, 440, 517
BcoDI GTCTC 3 cut(s) 201, 703, 787
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 2 cut(s) 251, 619
BfrI CTTAAG 1 cut(s) 284
BisI GCNGC 2 cut(s) 37, 160
BlsI GCNGC 2 cut(s) 38, 161
BmcAI AGTACT 1 cut(s) 617
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 2 cut(s) 134, 449
BmiI GGNNCC 3 cut(s) 135, 451, 674
BmrI ACTGGG 1 cut(s) 801
BmsI GCATC 3 cut(s) 48, 316, 471
BmuI ACTGGG 1 cut(s) 801
BpiI GAAGAC 1 cut(s) 543
BsaXI ACNNNNNCTCC 2 cut(s) 631, 661
Bsc4I CCNNNNNNNGG 2 cut(s) 347, 727
Bse1I ACTGG 2 cut(s) 383, 807
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 2 cut(s) 347, 727
BseMII CTCAG 3 cut(s) 249, 537, 801
BseNI ACTGG 2 cut(s) 383, 807
BseSI GKGCMC 1 cut(s) 250
BseXI GCAGC 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 136, 297
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 2 cut(s) 347, 727
BsmAI GTCTC 3 cut(s) 201, 703, 787
BsmFI GGGAC 1 cut(s) 435
BsmI GAATGC 1 cut(s) 55
BsnI GGCC 2 cut(s) 136, 297
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 2 cut(s) 201, 583
BspACI CCGC 1 cut(s) 160
BspANI GGCC 2 cut(s) 136, 297
BspCNI CTCAG 3 cut(s) 248, 538, 800
BspFNI CGCG 1 cut(s) 162
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 3 cut(s) 135, 451, 674
BspPI GGATC 1 cut(s) 578
BspTI CTTAAG 1 cut(s) 284
BsrI ACTGG 2 cut(s) 383, 807
BssMI GATC 2 cut(s) 201, 583
Bst4CI ACNGT 3 cut(s) 125, 604, 697
Bst6I CTCTTC 1 cut(s) 555
BstAFI CTTAAG 1 cut(s) 284
BstC8I GCNNGC 3 cut(s) 138, 321, 413
BstDEI CTNAG 3 cut(s) 235, 546, 787
BstENI CCTNNNNNAGG 1 cut(s) 725
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 2 cut(s) 204, 586
BstMAI GTCTC 3 cut(s) 201, 703, 787
BstMBI GATC 2 cut(s) 201, 583
BstMWI GCNNNNNNNGC 2 cut(s) 168, 275
BstNSI RCATGY 1 cut(s) 175
BstSFI CTRYAG 2 cut(s) 251, 619
BstSLI GKGCMC 1 cut(s) 250
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 48
BstV2I GAAGAC 1 cut(s) 543
BsuRI GGCC 2 cut(s) 136, 297
BtgZI GCGATG 1 cut(s) 448
BtsCI GGATG 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 4 cut(s) 130, 376, 559, 795
Cac8I GCNNGC 3 cut(s) 138, 321, 413
CciI TCATGA 1 cut(s) 442
CfoI GCGC 1 cut(s) 433
Cfr13I GGNCC 2 cut(s) 134, 449
CseI GACGC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 616, 810
CviAII CATG 4 cut(s) 77, 172, 299, 443
CviJI RGCY 9 cut(s) 10, 18, 136, 261, 269, 297, 323, 633, 731
CviKI_1 RGCY 9 cut(s) 10, 18, 136, 261, 269, 297, 323, 633, 731
CviQI GTAC 2 cut(s) 616, 810
DdeI CTNAG 3 cut(s) 235, 546, 787
DpnI GATC 2 cut(s) 203, 585
DpnII GATC 2 cut(s) 201, 583
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 449
EcoNI CCTNNNNNAGG 1 cut(s) 725
EcoO109I RGGNCCY 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 716
FaeI CATG 4 cut(s) 80, 175, 302, 446
FaqI GGGAC 1 cut(s) 435
FatI CATG 4 cut(s) 76, 171, 298, 442
FauNDI CATATG 1 cut(s) 435
Fnu4HI GCNGC 2 cut(s) 37, 160
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 37, 160
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 432
GluI GCNGC 2 cut(s) 37, 160
HaeIII GGCC 2 cut(s) 136, 297
HgaI GACGC 1 cut(s) 352
HhaI GCGC 1 cut(s) 433
Hin1II CATG 4 cut(s) 80, 175, 302, 446
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 3 cut(s) 477, 743, 795
HphI GGTGA 3 cut(s) 378, 580, 700
Hpy166II GTNNAC 1 cut(s) 736
Hpy188I TCNGA 8 cut(s) 201, 214, 238, 368, 394, 476, 547, 748
Hpy188III TCNNGA 3 cut(s) 443, 670, 737
Hpy8I GTNNAC 1 cut(s) 736
HpyAV CCTTC 3 cut(s) 124, 399, 559
HpyCH4III ACNGT 3 cut(s) 125, 604, 697
HpyCH4IV ACGT 1 cut(s) 663
HpyCH4V TGCA 7 cut(s) 36, 55, 177, 193, 329, 654, 758
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 275
HpyF3I CTNAG 3 cut(s) 235, 546, 787
HpySE526I ACGT 1 cut(s) 663
Hsp92II CATG 4 cut(s) 80, 175, 302, 446
HspAI GCGC 1 cut(s) 431
Kzo9I GATC 2 cut(s) 201, 583
LmnI GCTCC 1 cut(s) 168
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 3 cut(s) 48, 316, 471
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 663
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 203, 585
MboI GATC 2 cut(s) 201, 583
MboII GAAGA 2 cut(s) 548, 572
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 2 cut(s) 642, 716
MlyI GAGTC 2 cut(s) 752, 789
MmeI TCCRAC 2 cut(s) 661, 726
MseI TTAA 3 cut(s) 23, 225, 285
MslI CAYNNNNRTG 1 cut(s) 81
MspCI CTTAAG 1 cut(s) 284
Mva1269I GAATGC 1 cut(s) 55
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 168, 275
NdeI CATATG 1 cut(s) 435
NdeII GATC 2 cut(s) 201, 583
NlaIII CATG 4 cut(s) 80, 175, 302, 446
NlaIV GGNNCC 3 cut(s) 135, 451, 674
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 175
PagI TCATGA 1 cut(s) 442
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 477
PkrI GCNGC 2 cut(s) 38, 161
PleI GAGTC 2 cut(s) 751, 789
PpsI GAGTC 2 cut(s) 751, 789
PshBI ATTAAT 1 cut(s) 23
PspN4I GGNNCC 3 cut(s) 135, 451, 674
PspPI GGNCC 2 cut(s) 134, 449
RsaI GTAC 2 cut(s) 617, 811
RsaNI GTAC 2 cut(s) 616, 810
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 3 cut(s) 23, 225, 285
SatI GCNGC 2 cut(s) 37, 160
Sau3AI GATC 2 cut(s) 201, 583
Sau96I GGNCC 2 cut(s) 134, 449
ScaI AGTACT 1 cut(s) 617
SchI GAGTC 2 cut(s) 752, 789
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 3 cut(s) 48, 316, 471
SfcI CTRYAG 2 cut(s) 251, 619
SinI GGWCC 1 cut(s) 449
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 2 cut(s) 642, 716
SsiI CCGC 1 cut(s) 160
SspMI CTAG 1 cut(s) 141
TaaI ACNGT 3 cut(s) 125, 604, 697
TaiI ACGT 1 cut(s) 666
TaqI TCGA 2 cut(s) 582, 714
TasI AATT 2 cut(s) 642, 716
TatI WGTACW 2 cut(s) 615, 809
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 1 cut(s) 477
Tru1I TTAA 3 cut(s) 23, 225, 285
Tru9I TTAA 3 cut(s) 23, 225, 285
TscAI CASTG 4 cut(s) 130, 383, 559, 795
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 3 cut(s) 93, 99, 431
TspGWI ACGGA 1 cut(s) 713
TspRI CASTG 4 cut(s) 130, 383, 559, 795
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 449
VspI ATTAAT 1 cut(s) 23
XagI CCTNNNNNAGG 1 cut(s) 725
XapI RAATTY 1 cut(s) 716
XceI RCATGY 1 cut(s) 175
XspI CTAG 1 cut(s) 141
ZrmI AGTACT 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.