Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000367.1

Orthogroup ID

OG0006048

Physical Location & Seq

Genomic Coordinates Forward (+)

470124 .. 473666

Gene Structure 3543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000367.1_g000109.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgatggttcttgacttgaggacacgcgcgtgttggggcagcagggcagcagcggcaacactgggcagcagtgcgatggtgagcaatagcagggacttgacgttgtggtgtgcaaggcgtagggctgcagcaggaggcaggcagcagcagggtgcagtgacagggaggctaggtgcgcaggggctgcggcaggatgctgcagcaggaggcttgcggctaggggtgcaggtagggttttcagcagtttttgttgactgtgggcaacttctcattgcctcctttcaaacttgtggaagcatatcactattttacctgagacattgtctagtcttggccgggccggaagatgaaattaatgtagaaaaagtctcaaaaatgttgaagctacccagcctattagttttggtttgcagcattgttcttgttttgcattcataccaagcaacctcacatgatgaacatgatgaagttgaggatgagagggagtttaattatgacgacaacagtgagaaggggccagctagatggggaaagatacgccatgaatggagcatatgtaacaatggatcgttgcagtctcccatagatctgttagatgacagagttgatgtagtctcagatttagggaaacttcagggtaactacagggcttgcaatgccactcttaagaatagaggccatgatatgatgttgaaatggcatgctgatgcaggatatattccaatcaatggaactcagtatacagtcagacaatgccattggcactcaccttctgaacacaccatcaatggcaagcagtttgatttagaggtgcatctggttcatgacagtccaaatggaagcatcgctgttatcgggatcctgtataagtttggaaaacctgacccatttttgacacggatgatggactacttagaagacttatctgatagcagtaaagaagagaaagtgattggtatggttgatccaaagcaaataaaaactgtcagtacaaagtactacagatatataggctctcttacaactcctccttgcacacaaaatgtcctctggaccattgttggagaggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0010033 GO:0010037 GO:0016020 GO:0042221 GO:0042493 GO:0050896 GO:0072347 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

357

Amino Acids

39.54

Weight (kDa)

6.46

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08080 AT2G28210 AT2G28210
fragaria_vesca	FvH4_3g31680 FvH4_3g31680 FvH4_3g31680 FvH4_3g31680
malus_domestica	MD03G1121900.v1.1 MD11G1140500.v1.1
prunus_persica	Prupe.6G104900_v2.0.a1
pyrus_communis	pycom11g11620
rosa_chinensis	RchiOBHm_Chr5g0056011 RchiOBHm_Chr5g0058391
rosa_laevigata	RLG00000035043 RLG00000035216
rosa_multiflora	Rmu_sc0000367.1_g000109
rosa_roxburghii	Rroxscaffold_1G00022170 Rroxscaffold_1G00024250
rosa_rugosa	Rorug05G0313500
rosa_samantha	Rh5AG368100 Rh5AG381000 Rh5BG378800 Rh5BG392600 Rh5CG416700 Rh5DG407800
rosa_wichuraiana	Rw5G034560 Rw5G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	177
Acc36I	ACCTGC	1 cut(s)	217
AccB7I	CCANNNNNTGG	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	740
AccII	CGCG	2 cut(s)	27, 29
AciI	CCGC	3 cut(s)	53, 187, 214
AclWI	GGATC	4 cut(s)	574, 853, 866, 959
AcoI	YGGCCR	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	2 cut(s)	991, 998
AfiI	CCNNNNNNNGG	1 cut(s)	728
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	3 cut(s)	284, 382, 694
AleI	CACNNNNGTG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	385, 521
AluI	AGCT	2 cut(s)	385, 521
Alw26I	GTCTC	4 cut(s)	310, 373, 582, 619
AlwI	GGATC	4 cut(s)	574, 853, 866, 959
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	4 cut(s)	333, 338, 515, 676
AseI	ATTAAT	1 cut(s)	354
AspLEI	GCGC	2 cut(s)	29, 178
AspS9I	GGNCC	3 cut(s)	338, 515, 1053
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	91, 759
AvaII	GGWCC	1 cut(s)	1053
BamHI	GGATCC	1 cut(s)	858
BbsI	GAAGAC	1 cut(s)	924
BccI	CCATC	4 cut(s)	70, 519, 791, 898
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	4 cut(s)	310, 373, 582, 619
BfaI	CTAG	4 cut(s)	170, 218, 326, 522
BfmI	CTRYAG	4 cut(s)	126, 198, 643, 1000
BfrI	CTTAAG	1 cut(s)	665
BfuAI	ACCTGC	1 cut(s)	217
BglII	AGATCT	1 cut(s)	586
BmcAI	AGTACT	1 cut(s)	998
Bme1390I	CCNGG	1 cut(s)	337
Bme18I	GGWCC	1 cut(s)	1053
BmgT120I	GGNCC	3 cut(s)	338, 515, 1053
BmiI	GGNNCC	2 cut(s)	516, 860
BmrFI	CCNGG	1 cut(s)	337
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	4 cut(s)	184, 697, 823, 852
BmuI	ACTGGG	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	924
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	337
BsaXI	ACNNNNNCTCC	6 cut(s)	157, 187, 541, 571, 1012, 1042
Bsc4I	CCNNNNNNNGG	1 cut(s)	728
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	2 cut(s)	270, 661
BseGI	GGATG	3 cut(s)	199, 481, 906
BseLI	CCNNNNNNNGG	1 cut(s)	728
BseMI	GCAATG	2 cut(s)	270, 661
BseMII	CTCAG	3 cut(s)	305, 630, 749
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	1017
BseYI	CCCAGC	1 cut(s)	389
BsgI	GTGCAG	2 cut(s)	174, 245
Bsh1236I	CGCG	2 cut(s)	27, 29
BshFI	GGCC	4 cut(s)	335, 340, 517, 678
BsiSI	CCGG	2 cut(s)	336, 341
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	728
BsmAI	GTCTC	4 cut(s)	310, 373, 582, 619
BsmFI	GGGAC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	4 cut(s)	335, 340, 517, 678
Bsp143I	GATC	4 cut(s)	566, 586, 858, 964
BspACI	CCGC	3 cut(s)	53, 187, 214
BspANI	GGCC	4 cut(s)	335, 340, 517, 678
BspCNI	CTCAG	3 cut(s)	306, 629, 748
BspFNI	CGCG	2 cut(s)	27, 29
BspHI	TCATGA	1 cut(s)	823
BspLI	GGNNCC	2 cut(s)	516, 860
BspMAI	CTGCAG	2 cut(s)	130, 202
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	4 cut(s)	574, 853, 866, 959
BspTI	CTTAAG	1 cut(s)	665
BsrDI	GCAATG	2 cut(s)	270, 661
BsrI	ACTGG	1 cut(s)	66
BssMI	GATC	4 cut(s)	566, 586, 858, 964
BssNAI	GTATAC	1 cut(s)	741
Bst1107I	GTATAC	1 cut(s)	741
Bst4CI	ACNGT	5 cut(s)	257, 506, 745, 830, 985
Bst6I	CTCTTC	1 cut(s)	936
BstAFI	CTTAAG	1 cut(s)	665
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstC8I	GCNNGC	6 cut(s)	140, 212, 519, 652, 702, 794
BstDEI	CTNAG	4 cut(s)	314, 616, 735, 913
BstF5I	GGATG	3 cut(s)	199, 481, 906
BstFNI	CGCG	2 cut(s)	27, 29
BstHHI	GCGC	2 cut(s)	29, 178
BstKTI	GATC	4 cut(s)	569, 589, 861, 967
BstMAI	GTCTC	4 cut(s)	310, 373, 582, 619
BstMBI	GATC	4 cut(s)	566, 586, 858, 964
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 175, 184, 223, 656
BstNSI	RCATGY	1 cut(s)	704
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	4 cut(s)	126, 198, 643, 1000
BstUI	CGCG	2 cut(s)	27, 29
BstV2I	GAAGAC	1 cut(s)	924
BstX2I	RGATCY	2 cut(s)	586, 858
BstXI	CCANNNNNNTGG	1 cut(s)	525
BstYI	RGATCY	2 cut(s)	586, 858
BstZ17I	GTATAC	1 cut(s)	741
BsuRI	GGCC	4 cut(s)	335, 340, 517, 678
BtgZI	GCGATG	2 cut(s)	89, 829
BtsCI	GGATG	3 cut(s)	199, 481, 906
BtsI	GCAGTG	2 cut(s)	76, 162
BtsIMutI	CAGTG	4 cut(s)	59, 76, 162, 511
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	6 cut(s)	140, 212, 519, 652, 702, 794
CaiI	CAGNNNCTG	1 cut(s)	184
CciI	TCATGA	1 cut(s)	823
CfoI	GCGC	2 cut(s)	29, 178
Cfr13I	GGNCC	3 cut(s)	338, 515, 1053
Csp6I	GTAC	2 cut(s)	990, 997
CviAII	CATG	6 cut(s)	452, 461, 542, 680, 701, 824
CviQI	GTAC	2 cut(s)	990, 997
DdeI	CTNAG	4 cut(s)	314, 616, 735, 913
DpnI	GATC	4 cut(s)	568, 588, 860, 966
DpnII	GATC	4 cut(s)	566, 586, 858, 964
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	936
EarI	CTCTTC	1 cut(s)	936
Eco47I	GGWCC	1 cut(s)	1053
Eco57I	CTGAAG	1 cut(s)	617
FaeI	CATG	6 cut(s)	455, 464, 545, 683, 704, 827
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	6 cut(s)	451, 460, 541, 679, 700, 823
FauNDI	CATATG	1 cut(s)	554
FblI	GTMKAC	1 cut(s)	740
FokI	GGATG	3 cut(s)	206, 488, 913
FspBI	CTAG	4 cut(s)	170, 218, 326, 522
FspI	TGCGCA	1 cut(s)	177
GlaI	GCGC	2 cut(s)	28, 177
GsaI	CCCAGC	1 cut(s)	393
HaeIII	GGCC	4 cut(s)	335, 340, 517, 678
HapII	CCGG	2 cut(s)	336, 341
HhaI	GCGC	2 cut(s)	29, 178
Hin1II	CATG	6 cut(s)	455, 464, 545, 683, 704, 827
Hin6I	GCGC	2 cut(s)	27, 176
HinP1I	GCGC	2 cut(s)	27, 176
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	336, 341
HphI	GGTGA	2 cut(s)	91, 759
Hpy166II	GTNNAC	2 cut(s)	253, 741
Hpy188I	TCNGA	4 cut(s)	619, 749, 775, 928
Hpy188III	TCNNGA	4 cut(s)	11, 824, 856, 1051
Hpy8I	GTNNAC	2 cut(s)	253, 741
HpyAV	CCTTC	2 cut(s)	505, 780
HpyCH4III	ACNGT	5 cut(s)	257, 506, 745, 830, 985
HpyCH4IV	ACGT	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 175, 184, 223, 656
HpyF3I	CTNAG	4 cut(s)	314, 616, 735, 913
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	6 cut(s)	455, 464, 545, 683, 704, 827
HspAI	GCGC	2 cut(s)	27, 176
Kzo9I	GATC	4 cut(s)	566, 586, 858, 964
LmnI	GCTCC	1 cut(s)	549
LweI	GCATC	4 cut(s)	184, 697, 823, 852
MaeI	CTAG	4 cut(s)	170, 218, 326, 522
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	3 cut(s)	157, 557, 638
MalI	GATC	4 cut(s)	568, 588, 860, 966
MboI	GATC	4 cut(s)	566, 586, 858, 964
MboII	GAAGA	3 cut(s)	356, 929, 953
MflI	RGATCY	2 cut(s)	586, 858
MluCI	AATT	2 cut(s)	351, 490
MmeI	TCCRAC	1 cut(s)	1042
MseI	TTAA	4 cut(s)	354, 489, 666, 1072
MslI	CAYNNNNRTG	2 cut(s)	28, 705
MspA1I	CMGCKG	1 cut(s)	53
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	2 cut(s)	336, 341
MspR9I	CCNGG	1 cut(s)	337
Mva1269I	GAATGC	1 cut(s)	430
MvnI	CGCG	2 cut(s)	27, 29
MwoI	GCNNNNNNNGC	5 cut(s)	53, 175, 184, 223, 656
NciI	CCSGG	1 cut(s)	337
NdeI	CATATG	1 cut(s)	554
NdeII	GATC	4 cut(s)	566, 586, 858, 964
NlaIII	CATG	6 cut(s)	455, 464, 545, 683, 704, 827
NlaIV	GGNNCC	2 cut(s)	516, 860
NmuCI	GTSAC	1 cut(s)	157
NsbI	TGCGCA	1 cut(s)	177
NspI	RCATGY	1 cut(s)	704
OliI	CACNNNNGTG	1 cut(s)	28
PaeI	GCATGC	1 cut(s)	704
PagI	TCATGA	1 cut(s)	823
PctI	GAATGC	1 cut(s)	430
PflFI	GACNNNGTC	1 cut(s)	321
PflMI	CCANNNNNTGG	1 cut(s)	728
PshBI	ATTAAT	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	389
PspN4I	GGNNCC	2 cut(s)	516, 860
PspPI	GGNCC	3 cut(s)	338, 515, 1053
PsrI	GAACNNNNNNTAC	2 cut(s)	724, 756
PstI	CTGCAG	2 cut(s)	130, 202
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	2 cut(s)	586, 858
PsyI	GACNNNGTC	1 cut(s)	321
RsaI	GTAC	2 cut(s)	991, 998
RsaNI	GTAC	2 cut(s)	990, 997
RseI	CAYNNNNRTG	2 cut(s)	28, 705
SaqAI	TTAA	4 cut(s)	354, 489, 666, 1072
Sau3AI	GATC	4 cut(s)	566, 586, 858, 964
Sau96I	GGNCC	3 cut(s)	338, 515, 1053
ScaI	AGTACT	1 cut(s)	998
ScrFI	CCNGG	1 cut(s)	337
SfaNI	GCATC	4 cut(s)	184, 697, 823, 852
SfcI	CTRYAG	4 cut(s)	126, 198, 643, 1000
SinI	GGWCC	1 cut(s)	1053
SmiMI	CAYNNNNRTG	2 cut(s)	28, 705
SmlI	CTYRAG	2 cut(s)	16, 665
SmoI	CTYRAG	2 cut(s)	16, 665
SphI	GCATGC	1 cut(s)	704
Sse9I	AATT	2 cut(s)	351, 490
SsiI	CCGC	3 cut(s)	53, 187, 214
SspMI	CTAG	4 cut(s)	170, 218, 326, 522
StyD4I	CCNGG	1 cut(s)	335
TaaI	ACNGT	5 cut(s)	257, 506, 745, 830, 985
TaiI	ACGT	1 cut(s)	104
TasI	AATT	2 cut(s)	351, 490
TatI	WGTACW	2 cut(s)	989, 996
TauI	GCSGC	3 cut(s)	56, 190, 217
Tru1I	TTAA	4 cut(s)	354, 489, 666, 1072
Tru9I	TTAA	4 cut(s)	354, 489, 666, 1072
TscAI	CASTG	4 cut(s)	66, 76, 162, 511
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	6 cut(s)	363, 423, 471, 480, 558, 812
TspGWI	ACGGA	1 cut(s)	913
TspRI	CASTG	4 cut(s)	66, 76, 162, 511
Tth111I	GACNNNGTC	1 cut(s)	321
Van91I	CCANNNNNTGG	1 cut(s)	728
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	1053
VspI	ATTAAT	1 cut(s)	354
XceI	RCATGY	1 cut(s)	704
XmiI	GTMKAC	1 cut(s)	740
XspI	CTAG	4 cut(s)	170, 218, 326, 522
ZrmI	AGTACT	1 cut(s)	998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.