Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006048

Physical Location & Seq

Genomic Coordinates Reverse (-)

11351768 .. 11354975

Gene Structure 3208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1121900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGAAGTTTCCCACCCTAATCTTATTTTGCAGTTTCCTCATTGTCCTGGTATTGCTGAATTCATGCCAAGCATCATCTGATGAAGTTGAAGATGAGAGGGAGTTTAATTACAAGGAAGACAGTGAGAAGGGGCCGGCTCGATGGGGCGAGATACGCCAAGAATGGAGCATGTGCAGCAAGGGATCGATGCAGTCACCGATCGATCTGTTAGATGACAGGGTTGAAGTAGTGTCAAATTTTGGGATACTTCAGGGTAGCTACAGGCCTTGCAATGCCACTCTTAAGAATAGGGGCCATGATATGATGTTGAAGTGGGAAGCTGACGCAGGATTTATACAATTAAACGGAACTTTGTATAAACTGAAACAATGCCACTGGCACTCGTCTTCTGAACACACCATCAATGGCAAGAGGTTTGATTTAGAGGCGCATTTGGTTCATGAGAGCTCAACTGGCAAGATCGCTGTAACGGGAATCCTTTATAAGATTGGAGCTCCTGATCCATTTTTGTCATCAATGATGGATTCTTTGGCAGAAGTTTCTGGTACCAGTGAAGAGGAAGAGGCGGTTGGTACGGTTGATCCAAAGAAAATAAAAACAAGGAGCACAAAGTATTACAGATATATTGGCTCACTTACAATTCCTCCATGCACACAAAATGTTACCTGGACAATTGTTCAAGAGGTGAGGACTGTCTCAGAAGAACAAGTGGAATTCCTCCGCGTAGCTGTTCATGATGACTCAAAAACTAATGCAAGACCAGTACAACCGAGAAACGGGCGGGTAGTGCAAGTTTATAGACCCAAAGAAGAGGAAGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0010033 GO:0010037 GO:0016020 GO:0042221 GO:0042493 GO:0050896 GO:0072347 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

276

Amino Acids

31.23

Weight (kDa)

5.31

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	45 - 266	2e-43	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08080 AT2G28210 AT2G28210
fragaria_vesca	FvH4_3g31680 FvH4_3g31680 FvH4_3g31680 FvH4_3g31680
malus_domestica	MD03G1121900.v1.1 MD11G1140500.v1.1
prunus_persica	Prupe.6G104900_v2.0.a1
pyrus_communis	pycom11g11620
rosa_chinensis	RchiOBHm_Chr5g0056011 RchiOBHm_Chr5g0058391
rosa_laevigata	RLG00000035043 RLG00000035216
rosa_multiflora	Rmu_sc0000367.1_g000109
rosa_roxburghii	Rroxscaffold_1G00022170 Rroxscaffold_1G00024250
rosa_rugosa	Rorug05G0313500
rosa_samantha	Rh5AG368100 Rh5AG381000 Rh5BG378800 Rh5BG392600 Rh5CG416700 Rh5DG407800
rosa_wichuraiana	Rw5G034560 Rw5G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
Acc65I	GGTACC	1 cut(s)	548
AccB1I	GGYRCC	1 cut(s)	548
AccII	CGCG	1 cut(s)	726
AciI	CCGC	3 cut(s)	569, 724, 784
AclWI	GGATC	3 cut(s)	193, 497, 578
AcsI	RAATTY	3 cut(s)	61, 238, 716
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	3 cut(s)	550, 577, 768
AfiI	CCNNNNNNNGG	1 cut(s)	779
AflII	CTTAAG	1 cut(s)	284
AgsI	TTSAA	4 cut(s)	92, 227, 313, 683
AjnI	CCWGG	2 cut(s)	48, 668
AjuI	GAANNNNNNNTTGG	2 cut(s)	555, 587
AluBI	AGCT	5 cut(s)	261, 323, 450, 497, 731
AluI	AGCT	5 cut(s)	261, 323, 450, 497, 731
Alw21I	GWGCWC	3 cut(s)	452, 499, 611
Alw26I	GTCTC	1 cut(s)	703
AlwI	GGATC	3 cut(s)	193, 497, 578
AoxI	GGCC	3 cut(s)	134, 266, 295
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	3 cut(s)	61, 238, 716
Asp718I	GGTACC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	2 cut(s)	134, 295
AsuHPI	GGTGA	2 cut(s)	189, 700
BanI	GGYRCC	1 cut(s)	548
BanII	GRGCYC	2 cut(s)	452, 499
BbsI	GAAGAC	2 cut(s)	126, 381
Bbv12I	GWGCWC	3 cut(s)	452, 499, 611
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	3 cut(s)	138, 410, 517
BciT130I	CCWGG	2 cut(s)	50, 670
BciVI	GTATCC	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	703
BfmI	CTRYAG	1 cut(s)	262
BfrI	CTTAAG	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	240
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	50, 670
BmgT120I	GGNCC	2 cut(s)	134, 295
BmiI	GGNNCC	3 cut(s)	135, 296, 550
BmrFI	CCNGG	2 cut(s)	50, 670
BmsI	GCATC	2 cut(s)	83, 180
BpiI	GAAGAC	2 cut(s)	126, 381
Bsa29I	ATCGAT	2 cut(s)	188, 204
BsaXI	ACNNNNNCTCC	2 cut(s)	631, 661
Bsc4I	CCNNNNNNNGG	1 cut(s)	779
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	4 cut(s)	383, 460, 552, 764
Bse3DI	GCAATG	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	50, 670
BseCI	ATCGAT	2 cut(s)	188, 204
BseLI	CCNNNNNNNGG	1 cut(s)	779
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	714
BseNI	ACTGG	4 cut(s)	383, 460, 552, 764
BseXI	GCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	726
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	3 cut(s)	136, 268, 297
BshNI	GGYRCC	1 cut(s)	548
BshVI	ATCGAT	2 cut(s)	188, 204
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	3 cut(s)	452, 499, 611
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	779
BsmAI	GTCTC	1 cut(s)	703
BsnI	GGCC	3 cut(s)	136, 268, 297
Bsp1286I	GDGCHC	3 cut(s)	452, 499, 611
Bsp143I	GATC	6 cut(s)	185, 201, 205, 462, 502, 583
BspACI	CCGC	3 cut(s)	569, 724, 784
BspANI	GGCC	3 cut(s)	136, 268, 297
BspCNI	CTCAG	1 cut(s)	713
BspDI	ATCGAT	2 cut(s)	188, 204
BspFNI	CGCG	1 cut(s)	726
BspHI	TCATGA	2 cut(s)	442, 736
BspLI	GGNNCC	3 cut(s)	135, 296, 550
BspPI	GGATC	3 cut(s)	193, 497, 578
BspT107I	GGYRCC	1 cut(s)	548
BspTI	CTTAAG	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	280
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	4 cut(s)	383, 460, 552, 764
BssAI	RCCGGY	1 cut(s)	136
BssMI	GATC	6 cut(s)	185, 201, 205, 462, 502, 583
Bst2UI	CCWGG	2 cut(s)	50, 670
Bst4CI	ACNGT	3 cut(s)	125, 580, 697
Bst6I	CTCTTC	4 cut(s)	552, 558, 807, 813
BstAFI	CTTAAG	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	700
BstFNI	CGCG	1 cut(s)	726
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	6 cut(s)	188, 204, 208, 465, 505, 586
BstMAI	GTCTC	1 cut(s)	703
BstMBI	GATC	6 cut(s)	185, 201, 205, 462, 502, 583
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 177, 456, 790
BstNI	CCWGG	2 cut(s)	50, 670
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	2 cut(s)	48, 668
BstSFI	CTRYAG	1 cut(s)	262
BstUI	CGCG	1 cut(s)	726
BstV1I	GCAGC	1 cut(s)	189
BstV2I	GAAGAC	2 cut(s)	126, 381
Bsu15I	ATCGAT	2 cut(s)	188, 204
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	136, 268, 297
BsuTUI	ATCGAT	2 cut(s)	188, 204
BtsIMutI	CAGTG	3 cut(s)	130, 376, 559
Cac8I	GCNNGC	1 cut(s)	138
CciI	TCATGA	2 cut(s)	442, 736
CfoI	GCGC	1 cut(s)	433
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	134, 295
ClaI	ATCGAT	2 cut(s)	188, 204
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	3 cut(s)	549, 576, 767
CviAII	CATG	6 cut(s)	66, 172, 299, 443, 651, 737
CviQI	GTAC	3 cut(s)	549, 576, 767
DdeI	CTNAG	1 cut(s)	700
DpnI	GATC	6 cut(s)	187, 203, 207, 464, 504, 585
DpnII	GATC	6 cut(s)	185, 201, 205, 462, 502, 583
Eam1104I	CTCTTC	4 cut(s)	552, 558, 807, 813
EarI	CTCTTC	4 cut(s)	552, 558, 807, 813
Ecl136II	GAGCTC	2 cut(s)	450, 497
Eco147I	AGGCCT	1 cut(s)	268
Eco24I	GRGCYC	2 cut(s)	452, 499
Eco53kI	GAGCTC	2 cut(s)	450, 497
Eco57I	CTGAAG	1 cut(s)	236
EcoICRI	GAGCTC	2 cut(s)	450, 497
EcoRI	GAATTC	2 cut(s)	61, 716
EcoRII	CCWGG	2 cut(s)	48, 668
EcoT38I	GRGCYC	2 cut(s)	452, 499
FaeI	CATG	6 cut(s)	69, 175, 302, 446, 654, 740
FatI	CATG	6 cut(s)	65, 171, 298, 442, 650, 736
FauI	CCCGC	1 cut(s)	777
Fnu4HI	GCNGC	1 cut(s)	178
FriOI	GRGCYC	2 cut(s)	452, 499
Fsp4HI	GCNGC	1 cut(s)	178
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	136, 268, 297
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	6 cut(s)	69, 175, 302, 446, 654, 740
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HinfI	GANTC	3 cut(s)	477, 527, 743
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	2 cut(s)	189, 700
Hpy188I	TCNGA	3 cut(s)	82, 394, 703
Hpy188III	TCNNGA	4 cut(s)	443, 500, 683, 737
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	3 cut(s)	125, 580, 697
HpyCH4V	TGCA	7 cut(s)	33, 177, 193, 273, 654, 758, 793
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 177, 456, 790
HpyF3I	CTNAG	1 cut(s)	700
Hsp92II	CATG	6 cut(s)	69, 175, 302, 446, 654, 740
HspAI	GCGC	1 cut(s)	431
KpnI	GGTACC	1 cut(s)	552
KroI	GCCGGC	1 cut(s)	136
KroNI	GCCGGC	1 cut(s)	138
Kzo9I	GATC	6 cut(s)	185, 201, 205, 462, 502, 583
LmnI	GCTCC	4 cut(s)	168, 494, 502, 606
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	2 cut(s)	83, 180
MaeIII	GTNAC	3 cut(s)	195, 469, 664
MalI	GATC	6 cut(s)	187, 203, 207, 464, 504, 585
MboI	GATC	6 cut(s)	185, 201, 205, 462, 502, 583
MboII	GAAGA	7 cut(s)	104, 131, 381, 569, 575, 716, 824
MfeI	CAATTG	1 cut(s)	675
MhlI	GDGCHC	3 cut(s)	452, 499, 611
MluCI	AATT	7 cut(s)	61, 109, 238, 341, 642, 675, 716
MlyI	GAGTC	1 cut(s)	737
MroNI	GCCGGC	1 cut(s)	136
MseI	TTAA	3 cut(s)	108, 285, 344
MspCI	CTTAAG	1 cut(s)	284
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	50, 670
MunI	CAATTG	1 cut(s)	675
MvaI	CCWGG	2 cut(s)	50, 670
MvnI	CGCG	1 cut(s)	726
MwoI	GCNNNNNNNGC	4 cut(s)	156, 177, 456, 790
NaeI	GCCGGC	1 cut(s)	138
NdeII	GATC	6 cut(s)	185, 201, 205, 462, 502, 583
NgoMIV	GCCGGC	1 cut(s)	136
NlaIII	CATG	6 cut(s)	69, 175, 302, 446, 654, 740
NlaIV	GGNNCC	3 cut(s)	135, 296, 550
NmuCI	GTSAC	1 cut(s)	195
NspI	RCATGY	1 cut(s)	175
PagI	TCATGA	2 cut(s)	442, 736
PceI	AGGCCT	1 cut(s)	268
PdiI	GCCGGC	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	477, 527
PkrI	GCNGC	1 cut(s)	179
Ple19I	CGATCG	1 cut(s)	204
PleI	GAGTC	1 cut(s)	737
PpsI	GAGTC	1 cut(s)	737
PsiI	TTATAA	1 cut(s)	486
Psp124BI	GAGCTC	2 cut(s)	452, 499
Psp6I	CCWGG	2 cut(s)	48, 668
PspGI	CCWGG	2 cut(s)	48, 668
PspN4I	GGNNCC	3 cut(s)	135, 296, 550
PspPI	GGNCC	2 cut(s)	134, 295
PvuI	CGATCG	1 cut(s)	204
RsaI	GTAC	3 cut(s)	550, 577, 768
RsaNI	GTAC	3 cut(s)	549, 576, 767
SacI	GAGCTC	2 cut(s)	452, 499
SaqAI	TTAA	3 cut(s)	108, 285, 344
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	6 cut(s)	185, 201, 205, 462, 502, 583
Sau96I	GGNCC	2 cut(s)	134, 295
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	2 cut(s)	50, 670
SduI	GDGCHC	3 cut(s)	452, 499, 611
SetI	ASST	8 cut(s)	263, 325, 419, 452, 499, 671, 690, 733
SfaNI	GCATC	2 cut(s)	83, 180
SfcI	CTRYAG	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	7 cut(s)	61, 109, 238, 341, 642, 675, 716
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	3 cut(s)	569, 724, 784
SstI	GAGCTC	2 cut(s)	452, 499
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	48, 668
TaaI	ACNGT	3 cut(s)	125, 580, 697
TaqI	TCGA	3 cut(s)	142, 188, 204
TasI	AATT	7 cut(s)	61, 109, 238, 341, 642, 675, 716
TatI	WGTACW	1 cut(s)	766
TfiI	GAWTC	2 cut(s)	477, 527
Tru1I	TTAA	3 cut(s)	108, 285, 344
Tru9I	TTAA	3 cut(s)	108, 285, 344
TscAI	CASTG	3 cut(s)	130, 383, 559
TseFI	GTSAC	1 cut(s)	195
TseI	GCWGC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	195
TspDTI	ATGAA	4 cut(s)	54, 99, 431, 725
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	3 cut(s)	130, 383, 559
Vha464I	CTTAAG	1 cut(s)	284
XapI	RAATTY	3 cut(s)	61, 238, 716
XceI	RCATGY	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.