Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006048

Physical Location & Seq

Genomic Coordinates Reverse (-)

10312580 .. 10314481

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g11620.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGAAGTTTCCCACCCCAATATTATTTTACAGTTTCCTTATTGCCTTGGTATTGCTGAATTCTCGCCATGCAACATCTGAAGAAGTTGAAGATCAGAGGGAGTTTAATTATGAGGAAGACAGTGAGAAGGGACCGCTTCGATGGGGAGAGATACGCCAAGAATGGAGCATGTGCAGCAAGGGATCGATGCAGTCTCCGATTGATCTGTCAGATGACAGAGTCGAACTAGTGTCACATTTGGGGATACTTAAGAGTAACTACAGGCCTTGCAATGCCACTCTTAAGAATAGGGGACATGATATGATGTTGAAATGGGAAACTGATGCAGGATTTATACTATTAAACGGAACTTTGTATAAACTGAAACAATGCCACTGGCACGCGTCTTCAGAACACACCATCAATGGAAAGAGGTTTGATTTAGAGGTGCATTTGGTTCATGAGAGCGCAACTGGAAATATTGCTGTGACTGGAATTCTTTATAGGATTGGAGCTCCTGATCCATTTTTGTCATCGATCATGGATTATTTAGCAGACGTCTCTGATACCACTGACGAGGAAGAAGTGGTTGGTATGGTTGATCCAAGGCAAATGAAAACAAGCAGCACAAAGTATTACAGATATATTGGCTCACTTACAACTCCCCCTTGCACACAAAATGTTATCTGGACCATTGCTCGAGAGGTGAGCACTGTCTCAGAAGAACAAGTGAAATCACTCCGAGTAGCTGTTCATGATGACTCAGACACTAATGCAAGACCAGTACAACCCAGAAACAGGCGGATAGTGCAACTTTATAGACAAACAGTAGAGGAAAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0010033 GO:0010037 GO:0016020 GO:0042221 GO:0042493 GO:0050896 GO:0072347 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

276

Amino Acids

31.53

Weight (kDa)

5.52

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08080 AT2G28210 AT2G28210
fragaria_vesca	FvH4_3g31680 FvH4_3g31680 FvH4_3g31680 FvH4_3g31680
malus_domestica	MD03G1121900.v1.1 MD11G1140500.v1.1
prunus_persica	Prupe.6G104900_v2.0.a1
pyrus_communis	pycom11g11620
rosa_chinensis	RchiOBHm_Chr5g0056011 RchiOBHm_Chr5g0058391
rosa_laevigata	RLG00000035043 RLG00000035216
rosa_multiflora	Rmu_sc0000367.1_g000109
rosa_roxburghii	Rroxscaffold_1G00022170 Rroxscaffold_1G00024250
rosa_rugosa	Rorug05G0313500
rosa_samantha	Rh5AG368100 Rh5AG381000 Rh5BG378800 Rh5BG392600 Rh5CG416700 Rh5DG407800
rosa_wichuraiana	Rw5G034560 Rw5G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	543
AccII	CGCG	1 cut(s)	386
AciI	CCGC	2 cut(s)	137, 784
AclWI	GGATC	3 cut(s)	193, 497, 578
AcsI	RAATTY	2 cut(s)	61, 477
AcuI	CTGAAG	2 cut(s)	102, 375
AcyI	GRCGYC	1 cut(s)	540
AfaI	GTAC	1 cut(s)	768
AfiI	CCNNNNNNNGG	1 cut(s)	780
AflII	CTTAAG	2 cut(s)	251, 284
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	92, 313
AhlI	ACTAGT	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	555, 587
AluBI	AGCT	2 cut(s)	497, 731
AluI	AGCT	2 cut(s)	497, 731
Alw21I	GWGCWC	2 cut(s)	499, 695
Alw26I	GTCTC	3 cut(s)	201, 547, 703
AlwI	GGATC	3 cut(s)	193, 497, 578
Ama87I	CYCGRG	1 cut(s)	681
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	2 cut(s)	177, 606
ApoI	RAATTY	2 cut(s)	61, 477
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	2 cut(s)	134, 672
AsuHPI	GGTGA	1 cut(s)	700
AvaI	CYCGRG	1 cut(s)	681
AvaII	GGWCC	2 cut(s)	134, 672
BanII	GRGCYC	1 cut(s)	499
BbsI	GAAGAC	2 cut(s)	126, 381
Bbv12I	GWGCWC	2 cut(s)	499, 695
BbvI	GCAGC	2 cut(s)	189, 618
BccI	CCATC	2 cut(s)	138, 410
BciVI	GTATCC	1 cut(s)	240
BcoDI	GTCTC	3 cut(s)	201, 547, 703
BcuI	ACTAGT	1 cut(s)	229
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	262
BfrI	CTTAAG	2 cut(s)	251, 284
BfuI	GTATCC	1 cut(s)	240
BisI	GCNGC	2 cut(s)	178, 607
BlsI	GCNGC	2 cut(s)	179, 608
Bme18I	GGWCC	2 cut(s)	134, 672
BmeT110I	CYCGRG	1 cut(s)	681
BmgT120I	GGNCC	2 cut(s)	134, 672
BmiI	GGNNCC	1 cut(s)	135
BmsI	GCATC	2 cut(s)	180, 316
BpiI	GAAGAC	2 cut(s)	126, 381
Bsa29I	ATCGAT	2 cut(s)	188, 518
BsaHI	GRCGYC	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	48, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	780
Bse1I	ACTGG	4 cut(s)	383, 460, 478, 764
Bse3DI	GCAATG	2 cut(s)	280, 675
BseCI	ATCGAT	2 cut(s)	188, 518
BseDI	CCNNGG	2 cut(s)	48, 587
BseLI	CCNNNNNNNGG	1 cut(s)	780
BseMI	GCAATG	2 cut(s)	280, 675
BseMII	CTCAG	2 cut(s)	714, 759
BseNI	ACTGG	4 cut(s)	383, 460, 478, 764
BseXI	GCAGC	2 cut(s)	189, 618
BsgI	GTGCAG	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	386
BshFI	GGCC	1 cut(s)	268
BshVI	ATCGAT	2 cut(s)	188, 518
BsiHKAI	GWGCWC	2 cut(s)	499, 695
BsiHKCI	CYCGRG	1 cut(s)	681
BslFI	GGGAC	2 cut(s)	147, 309
BslI	CCNNNNNNNGG	1 cut(s)	780
BsmAI	GTCTC	3 cut(s)	201, 547, 703
BsmBI	CGTCTC	1 cut(s)	547
BsmFI	GGGAC	2 cut(s)	147, 309
BsnI	GGCC	1 cut(s)	268
BsoBI	CYCGRG	1 cut(s)	681
Bsp1286I	GDGCHC	2 cut(s)	499, 695
Bsp143I	GATC	6 cut(s)	94, 185, 205, 502, 519, 583
BspACI	CCGC	2 cut(s)	137, 784
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	2 cut(s)	713, 758
BspDI	ATCGAT	2 cut(s)	188, 518
BspFNI	CGCG	1 cut(s)	386
BspHI	TCATGA	2 cut(s)	442, 736
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	3 cut(s)	193, 497, 578
BspTI	CTTAAG	2 cut(s)	251, 284
BsrDI	GCAATG	2 cut(s)	280, 675
BsrI	ACTGG	4 cut(s)	383, 460, 478, 764
BssECI	CCNNGG	2 cut(s)	48, 587
BssMI	GATC	6 cut(s)	94, 185, 205, 502, 519, 583
BssNI	GRCGYC	1 cut(s)	540
BssT1I	CCWWGG	2 cut(s)	48, 587
Bst4CI	ACNGT	4 cut(s)	35, 125, 697, 811
BstACI	GRCGYC	1 cut(s)	540
BstAFI	CTTAAG	2 cut(s)	251, 284
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	700, 745
BstFNI	CGCG	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	6 cut(s)	97, 188, 208, 505, 522, 586
BstMAI	GTCTC	3 cut(s)	201, 547, 703
BstMBI	GATC	6 cut(s)	94, 185, 205, 502, 519, 583
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 790
BstNSI	RCATGY	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	262
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	2 cut(s)	189, 618
BstV2I	GAAGAC	2 cut(s)	126, 381
Bsu15I	ATCGAT	2 cut(s)	188, 518
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	268
BsuTUI	ATCGAT	2 cut(s)	188, 518
BtsIMutI	CAGTG	4 cut(s)	130, 376, 552, 693
Cac8I	GCNNGC	1 cut(s)	384
CciI	TCATGA	2 cut(s)	442, 736
CfoI	GCGC	1 cut(s)	452
Cfr13I	GGNCC	2 cut(s)	134, 672
ClaI	ATCGAT	2 cut(s)	188, 518
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	767
CviAII	CATG	6 cut(s)	71, 172, 299, 443, 523, 737
CviJI	RGCY	4 cut(s)	268, 497, 633, 731
CviKI_1	RGCY	4 cut(s)	268, 497, 633, 731
CviQI	GTAC	1 cut(s)	767
DdeI	CTNAG	2 cut(s)	700, 745
DpnI	GATC	6 cut(s)	96, 187, 207, 504, 521, 585
DpnII	GATC	6 cut(s)	94, 185, 205, 502, 519, 583
EciI	GGCGGA	1 cut(s)	799
Ecl136II	GAGCTC	1 cut(s)	497
Eco130I	CCWWGG	2 cut(s)	48, 587
Eco147I	AGGCCT	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	499
Eco47I	GGWCC	2 cut(s)	134, 672
Eco53kI	GAGCTC	1 cut(s)	497
Eco57I	CTGAAG	2 cut(s)	102, 375
Eco88I	CYCGRG	1 cut(s)	681
EcoICRI	GAGCTC	1 cut(s)	497
EcoRI	GAATTC	2 cut(s)	61, 477
EcoT14I	CCWWGG	2 cut(s)	48, 587
EcoT38I	GRGCYC	1 cut(s)	499
ErhI	CCWWGG	2 cut(s)	48, 587
Esp3I	CGTCTC	1 cut(s)	547
FaeI	CATG	6 cut(s)	74, 175, 302, 446, 526, 740
FaqI	GGGAC	2 cut(s)	147, 309
FatI	CATG	6 cut(s)	70, 171, 298, 442, 522, 736
Fnu4HI	GCNGC	2 cut(s)	178, 607
FriOI	GRGCYC	1 cut(s)	499
Fsp4HI	GCNGC	2 cut(s)	178, 607
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	2 cut(s)	178, 607
HaeIII	GGCC	1 cut(s)	268
HgaI	GACGC	1 cut(s)	375
HhaI	GCGC	1 cut(s)	452
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	6 cut(s)	74, 175, 302, 446, 526, 740
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HinfI	GANTC	2 cut(s)	222, 743
HphI	GGTGA	1 cut(s)	700
Hpy188I	TCNGA	9 cut(s)	82, 99, 201, 214, 394, 547, 703, 725, 748
Hpy188III	TCNNGA	5 cut(s)	443, 500, 670, 683, 737
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	4 cut(s)	35, 125, 697, 811
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	9 cut(s)	74, 177, 193, 273, 329, 433, 654, 758, 793
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 790
HpyF3I	CTNAG	2 cut(s)	700, 745
HpySE526I	ACGT	1 cut(s)	540
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	6 cut(s)	74, 175, 302, 446, 526, 740
HspAI	GCGC	1 cut(s)	450
Kzo9I	GATC	6 cut(s)	94, 185, 205, 502, 519, 583
LmnI	GCTCC	3 cut(s)	168, 494, 502
Lsp1109I	GCAGC	2 cut(s)	189, 618
LweI	GCATC	2 cut(s)	180, 316
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	3 cut(s)	234, 257, 469
MalI	GATC	6 cut(s)	96, 187, 207, 504, 521, 585
MboI	GATC	6 cut(s)	94, 185, 205, 502, 519, 583
MboII	GAAGA	6 cut(s)	95, 104, 131, 381, 575, 716
MhlI	GDGCHC	2 cut(s)	499, 695
MluCI	AATT	4 cut(s)	61, 109, 477, 823
MluI	ACGCGT	1 cut(s)	384
MlyI	GAGTC	2 cut(s)	231, 737
MnlI	CCTC	7 cut(s)	93, 109, 408, 421, 553, 679, 808
MseI	TTAA	4 cut(s)	108, 252, 285, 344
MspCI	CTTAAG	2 cut(s)	251, 284
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	2 cut(s)	177, 790
NdeII	GATC	6 cut(s)	94, 185, 205, 502, 519, 583
NlaIII	CATG	6 cut(s)	74, 175, 302, 446, 526, 740
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	234, 469
NspI	RCATGY	1 cut(s)	175
PaeR7I	CTCGAG	1 cut(s)	681
PagI	TCATGA	2 cut(s)	442, 736
PceI	AGGCCT	1 cut(s)	268
PflFI	GACNNNGTC	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	179, 608
PleI	GAGTC	2 cut(s)	230, 737
PpsI	GAGTC	2 cut(s)	230, 737
Psp124BI	GAGCTC	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	134, 672
PsyI	GACNNNGTC	1 cut(s)	221
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
SacI	GAGCTC	1 cut(s)	499
SaqAI	TTAA	4 cut(s)	108, 252, 285, 344
SatI	GCNGC	2 cut(s)	178, 607
Sau3AI	GATC	6 cut(s)	94, 185, 205, 502, 519, 583
Sau96I	GGNCC	2 cut(s)	134, 672
SchI	GAGTC	2 cut(s)	231, 737
SduI	GDGCHC	2 cut(s)	499, 695
SetI	ASST	6 cut(s)	419, 432, 499, 543, 690, 733
SfaNI	GCATC	2 cut(s)	180, 316
SfcI	CTRYAG	1 cut(s)	262
Sfr274I	CTCGAG	1 cut(s)	681
SinI	GGWCC	2 cut(s)	134, 672
SlaI	CTCGAG	1 cut(s)	681
SmlI	CTYRAG	3 cut(s)	251, 284, 681
SmoI	CTYRAG	3 cut(s)	251, 284, 681
SpeI	ACTAGT	1 cut(s)	229
Sse9I	AATT	4 cut(s)	61, 109, 477, 823
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	2 cut(s)	137, 784
SspI	AATATT	2 cut(s)	24, 463
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	499
StuI	AGGCCT	1 cut(s)	268
StyI	CCWWGG	2 cut(s)	48, 587
TaaI	ACNGT	4 cut(s)	35, 125, 697, 811
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	5 cut(s)	142, 188, 225, 518, 682
TasI	AATT	4 cut(s)	61, 109, 477, 823
TatI	WGTACW	1 cut(s)	766
Tru1I	TTAA	4 cut(s)	108, 252, 285, 344
Tru9I	TTAA	4 cut(s)	108, 252, 285, 344
TscAI	CASTG	4 cut(s)	130, 383, 559, 700
TseFI	GTSAC	2 cut(s)	234, 469
TseI	GCWGC	2 cut(s)	177, 606
Tsp45I	GTSAC	2 cut(s)	234, 469
TspDTI	ATGAA	3 cut(s)	431, 611, 725
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	4 cut(s)	130, 383, 559, 700
Tth111I	GACNNNGTC	1 cut(s)	221
Vha464I	CTTAAG	2 cut(s)	251, 284
VpaK11BI	GGWCC	2 cut(s)	134, 672
XapI	RAATTY	2 cut(s)	61, 477
XceI	RCATGY	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	681
XspI	CTAG	1 cut(s)	230
ZraI	GACGTC	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.