Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002303

Physical Location & Seq

Genomic Coordinates Reverse (-)

3045259 .. 3048006

Gene Structure 2748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGCTGGACTTAAGATCTGGCAAGCCATCTTTATCACCATTGCACTGATCATCATTGTCGTACTCTCTGTTCTTTCATTTTGTCTCATTTGGAAAAAGAAATCAAGAAGATCCAAAACCTTAAGTCTTCCCATCATACAAACCCCTGTGGTGTCAAAGGAGATCAAGGAAGTCAGGATCGAGCATGTTGTCTCAACGAGTAGTAACTTCGATCCTCAGGATGAAAACAACAATGAATCTGACAAATTCTTGCTTAATTTGGAAATGGAGAAGAACAGAGAGAATGGTTTGAGTAGTAGCCGGTCTGGTTCAGGCAAAGAAGGTTATTTATGTGTTGCAAACCGGTCTACTTCATCATTGTATGAGATGGCTACACCATCACCATCACCTCTTTCTGGTTTACCTGAGTCACACCTTGGATGGGGTCATTGGTTTACTCTGAGAGATCTTGAGATAGCAACAAACAGATTCTCAAAGGAAAATGTGATTGGTGAAGGAGGCTATGGAGTTGTTTACCGAGGCGAGTTGGTCAATGGGAGTCTTGTTGCCGTGAAAAAGATCCTAAACCACTTGGGACAAGCAGAGAAAGAGTTTAGAGTAGAGGTAGATGCTATAGGTCATGTGCGTCACAAGAACTTGGTACGTCTTCTAGGATACTGCATTGAAGGCACAAACAGGATATTGGTTTATGAGTATATGAACAATGGGAACCTTGAAGAATGGCTTCACGGAGCAATGAAACATCATGGATATCTAACTTGGGAAGCTCGAATGAAAGTTCTCACTGGAACATCCAAGGCTCTTGCATATCTACACGAGGCAATCGAACCAAAAGTGGTGCATAGAGACATCAAGTCGAGCAACATCTTGATCGATGATAGATTCAATGCAAAGATTTCTGATTTTGGCCTTGCCAAGTTACTTGGAGATGGGAAAAGCCATGTGACTACTAGAGTCATGGGAACATTTGGGTATGTTGCTCCTGAGTATGCGAATACCGGACTTTTGAATGAAAAGAGTGATGTGTACAGCTTTGGTGTCTTGGTCTTAGAAGCAATAACCGGAAGAGATCCTGTGGATTACGCGCGGCCTGCTAATGAGGTGAATTTGGTTGAGTGGTTGAAGATGATGGTAGGATCTAAGAGATTAGAAGAAGTCATTGATCCAAACATAGCAGTTAGGCCAGCGACTAGAGCACTGAAACGAGTACTTCTTACAGCACTTAGATGCATTGATCCTGATTCTGAAAAGAGACCTAAAATGAGTCAAGTTGTGCGTATGCTGGAGTCTGAGGAATATCCTGTACCAAGAGAGGAGCGGAGAGTGCGCAGAACGCAAGAGGAAAACTCGGATACCGATAGAAGCAGACCGGTTTCAAGATCACAGAGCAAGAGACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

466

Amino Acids

52.59

Weight (kDa)

9.0

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	158 - 426	3e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	160 - 428	2.3e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09440 AT1G09440 AT1G56720 AT1G56720 AT1G56720 AT1G56720
fragaria_vesca	FvH4_4g21450 FvH4_4g21450 FvH4_6g08381
malus_domestica	MD04G1187400.v1.1 MD12G1201000.v1.1 MD13G1141100.v1.1 MD16G1137200.v1.1
prunus_persica	Prupe.1G106300_v2.0.a1 Prupe.1G106300_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1
pyrus_communis	pycom04g16550 pycom12g18730 pycom13g12260 pycom16g12090 pycom16g12100
rosa_chinensis	RchiOBHm_Chr3g0458331 RchiOBHm_Chr4g0427381
rosa_laevigata	RLG00000007248 RLG00000025168
rosa_multiflora	Rmu_sc0003813.1_g000020 Rmu_sc0007338.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369050 Rroxscaffold_6G00421160
rosa_rugosa	Rorug03G0025800 Rorug03G0025800 Rorug04G0217200 Rorug04G0217300 Rorug04G0217400 Rorug04G0217500
rosa_samantha	Rh3BG089600 Rh4AG273600 Rh4DG276600
rosa_wichuraiana	Rw3G007360 Rw4G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1328
AccBSI	CCGCTC	1 cut(s)	1318
AccI	GTMKAC	1 cut(s)	347
AccII	CGCG	2 cut(s)	1085, 1087
AciI	CCGC	2 cut(s)	1087, 1318
AclWI	GGATC	8 cut(s)	105, 185, 206, 553, 1064, 1144, 1157, 1229
AcsI	RAATTY	2 cut(s)	245, 1105
AfaI	GTAC	5 cut(s)	63, 642, 1028, 1209, 1305
AfiI	CCNNNNNNNGG	2 cut(s)	395, 421
AflII	CTTAAG	2 cut(s)	11, 121
AgeI	ACCGGT	2 cut(s)	342, 1369
AgsI	TTSAA	6 cut(s)	665, 716, 886, 1009, 1123, 1377
AhdI	GACNNNNNGTC	1 cut(s)	853
AjuI	GAANNNNNNNTTGG	2 cut(s)	471, 503
AluBI	AGCT	2 cut(s)	767, 1032
AluI	AGCT	2 cut(s)	767, 1032
Alw21I	GWGCWC	1 cut(s)	1198
Alw26I	GTCTC	5 cut(s)	89, 196, 840, 1246, 1387
AlwI	GGATC	8 cut(s)	105, 185, 206, 553, 1064, 1144, 1157, 1229
AoxI	GGCC	3 cut(s)	907, 1088, 1181
ApoI	RAATTY	2 cut(s)	245, 1105
AsiGI	ACCGGT	2 cut(s)	342, 1369
Asp700I	GAANNNNTTC	1 cut(s)	723
AspLEI	GCGC	2 cut(s)	1087, 1329
AsuHPI	GGTGA	5 cut(s)	28, 372, 378, 503, 1114
AxyI	CCTNAGG	1 cut(s)	216
BauI	CACGAG	1 cut(s)	815
BbsI	GAAGAC	2 cut(s)	119, 638
Bbv12I	GWGCWC	1 cut(s)	1198
BccI	CCATC	8 cut(s)	35, 140, 361, 385, 391, 414, 923, 1123
BceAI	ACGGC	1 cut(s)	533
BciVI	GTATCC	2 cut(s)	647, 1345
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	5 cut(s)	89, 196, 840, 1246, 1387
BfaI	CTAG	3 cut(s)	650, 951, 1191
BfmI	CTRYAG	1 cut(s)	612
BfrI	CTTAAG	2 cut(s)	11, 121
BfuI	GTATCC	2 cut(s)	647, 1345
BglII	AGATCT	2 cut(s)	15, 445
BisI	GCNGC	1 cut(s)	1088
BlsI	GCNGC	1 cut(s)	1089
BmcAI	AGTACT	1 cut(s)	1209
BmeRI	GACNNNNNGTC	1 cut(s)	853
BmiI	GGNNCC	1 cut(s)	710
BmsI	GCATC	2 cut(s)	598, 1217
BpiI	GAAGAC	2 cut(s)	119, 638
BplI	GAGNNNNNCTC	2 cut(s)	1331, 1363
BpmI	CTGGAG	1 cut(s)	1304
BpuEI	CTTGAG	1 cut(s)	470
Bsa29I	ATCGAT	1 cut(s)	873
BsaI	GGTCTC	1 cut(s)	1246
BsaJI	CCNNGG	3 cut(s)	415, 517, 795
BsaWI	WCCGGW	4 cut(s)	342, 998, 1061, 1369
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 421
Bse118I	RCCGGY	3 cut(s)	300, 342, 1369
Bse1I	ACTGG	1 cut(s)	790
Bse21I	CCTNAGG	1 cut(s)	216
Bse3DI	GCAATG	2 cut(s)	39, 741
BseCI	ATCGAT	1 cut(s)	873
BseDI	CCNNGG	3 cut(s)	415, 517, 795
BseGI	GGATG	3 cut(s)	226, 425, 791
BseLI	CCNNNNNNNGG	2 cut(s)	395, 421
BseMI	GCAATG	2 cut(s)	39, 741
BseMII	CTCAG	5 cut(s)	230, 396, 431, 975, 1281
BseNI	ACTGG	1 cut(s)	790
BseRI	GAGGAG	1 cut(s)	1328
Bsh1236I	CGCG	2 cut(s)	1085, 1087
BshFI	GGCC	3 cut(s)	909, 1090, 1183
BshTI	ACCGGT	2 cut(s)	342, 1369
BshVI	ATCGAT	1 cut(s)	873
BsiHKAI	GWGCWC	1 cut(s)	1198
BsiSI	CCGG	5 cut(s)	301, 343, 999, 1062, 1370
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	2 cut(s)	395, 421
BsmAI	GTCTC	5 cut(s)	89, 196, 840, 1246, 1387
BsmFI	GGGAC	1 cut(s)	588
BsnI	GGCC	3 cut(s)	909, 1090, 1183
Bso31I	GGTCTC	1 cut(s)	1246
Bsp1286I	GDGCHC	1 cut(s)	1198
Bsp1407I	TGTACA	1 cut(s)	1026
BspACI	CCGC	2 cut(s)	1087, 1318
BspANI	GGCC	3 cut(s)	909, 1090, 1183
BspCNI	CTCAG	5 cut(s)	229, 397, 432, 976, 1282
BspDI	ATCGAT	1 cut(s)	873
BspFNI	CGCG	2 cut(s)	1085, 1087
BspLI	GGNNCC	1 cut(s)	710
BspPI	GGATC	8 cut(s)	105, 185, 206, 553, 1064, 1144, 1157, 1229
BspTI	CTTAAG	2 cut(s)	11, 121
BspTNI	GGTCTC	1 cut(s)	1246
BsrBI	CCGCTC	1 cut(s)	1318
BsrDI	GCAATG	2 cut(s)	39, 741
BsrFI	RCCGGY	3 cut(s)	300, 342, 1369
BsrGI	TGTACA	1 cut(s)	1026
BsrI	ACTGG	1 cut(s)	790
BssAI	RCCGGY	3 cut(s)	300, 342, 1369
BssECI	CCNNGG	3 cut(s)	415, 517, 795
BssSI	CACGAG	1 cut(s)	815
BssT1I	CCWWGG	2 cut(s)	415, 795
Bst2BI	CACGAG	1 cut(s)	815
Bst4CI	ACNGT	1 cut(s)	1398
Bst6I	CTCTTC	1 cut(s)	1060
BstAFI	CTTAAG	2 cut(s)	11, 121
BstAUI	TGTACA	1 cut(s)	1026
BstC8I	GCNNGC	3 cut(s)	24, 1092, 1185
BstDEI	CTNAG	8 cut(s)	216, 405, 440, 984, 1048, 1140, 1223, 1290
BstF5I	GGATG	3 cut(s)	226, 425, 791
BstFNI	CGCG	2 cut(s)	1085, 1087
BstHHI	GCGC	2 cut(s)	1087, 1329
BstMAI	GTCTC	5 cut(s)	89, 196, 840, 1246, 1387
BstMWI	GCNNNNNNNGC	5 cut(s)	666, 1091, 1193, 1324, 1333
BstNSI	RCATGY	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	612
BstUI	CGCG	2 cut(s)	1085, 1087
BstV2I	GAAGAC	2 cut(s)	119, 638
BstX2I	RGATCY	6 cut(s)	15, 110, 445, 558, 1069, 1136
BstYI	RGATCY	6 cut(s)	15, 110, 445, 558, 1069, 1136
Bsu15I	ATCGAT	1 cut(s)	873
Bsu36I	CCTNAGG	1 cut(s)	216
BsuI	GTATCC	2 cut(s)	647, 1345
BsuRI	GGCC	3 cut(s)	909, 1090, 1183
BsuTUI	ATCGAT	1 cut(s)	873
BtsCI	GGATG	3 cut(s)	226, 425, 791
BtsIMutI	CAGTG	3 cut(s)	44, 783, 1196
Cac8I	GCNNGC	3 cut(s)	24, 1092, 1185
CfoI	GCGC	2 cut(s)	1087, 1329
Cfr10I	RCCGGY	3 cut(s)	300, 342, 1369
ClaI	ATCGAT	1 cut(s)	873
CseI	GACGC	1 cut(s)	614
Csp6I	GTAC	5 cut(s)	62, 641, 1027, 1208, 1304
CspAI	ACCGGT	2 cut(s)	342, 1369
CviAII	CATG	5 cut(s)	185, 620, 746, 941, 958
CviQI	GTAC	5 cut(s)	62, 641, 1027, 1208, 1304
DdeI	CTNAG	8 cut(s)	216, 405, 440, 984, 1048, 1140, 1223, 1290
DriI	GACNNNNNGTC	1 cut(s)	853
Eam1104I	CTCTTC	1 cut(s)	1060
Eam1105I	GACNNNNNGTC	1 cut(s)	853
EarI	CTCTTC	1 cut(s)	1060
Eco130I	CCWWGG	2 cut(s)	415, 795
Eco31I	GGTCTC	1 cut(s)	1246
Eco32I	GATATC	1 cut(s)	752
Eco81I	CCTNAGG	1 cut(s)	216
EcoRV	GATATC	1 cut(s)	752
EcoT14I	CCWWGG	2 cut(s)	415, 795
EcoT22I	ATGCAT	1 cut(s)	1232
ErhI	CCWWGG	2 cut(s)	415, 795
FaeI	CATG	5 cut(s)	188, 623, 749, 944, 961
FalI	AAGNNNNNCTT	2 cut(s)	708, 740
FaqI	GGGAC	1 cut(s)	588
FatI	CATG	5 cut(s)	184, 619, 745, 940, 957
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	1 cut(s)	1088
FokI	GGATG	3 cut(s)	233, 432, 778
Fsp4HI	GCNGC	1 cut(s)	1088
FspBI	CTAG	3 cut(s)	650, 951, 1191
FspI	TGCGCA	1 cut(s)	1328
GlaI	GCGC	2 cut(s)	1086, 1328
GluI	GCNGC	1 cut(s)	1088
GsuI	CTGGAG	1 cut(s)	1304
HaeIII	GGCC	3 cut(s)	909, 1090, 1183
HapII	CCGG	5 cut(s)	301, 343, 999, 1062, 1370
HgaI	GACGC	1 cut(s)	614
HhaI	GCGC	2 cut(s)	1087, 1329
Hin1II	CATG	5 cut(s)	188, 623, 749, 944, 961
Hin6I	GCGC	2 cut(s)	1085, 1327
HinP1I	GCGC	2 cut(s)	1085, 1327
HinfI	GANTC	9 cut(s)	236, 407, 468, 538, 882, 954, 1241, 1264, 1286
HpaII	CCGG	5 cut(s)	301, 343, 999, 1062, 1370
HphI	GGTGA	5 cut(s)	28, 372, 378, 503, 1114
Hpy166II	GTNNAC	5 cut(s)	348, 401, 435, 514, 1027
Hpy188I	TCNGA	6 cut(s)	241, 441, 901, 1246, 1291, 1351
Hpy188III	TCNNGA	8 cut(s)	105, 175, 218, 449, 868, 983, 1238, 1377
Hpy8I	GTNNAC	5 cut(s)	348, 401, 435, 514, 1027
HpyAV	CCTTC	3 cut(s)	314, 488, 659
HpyCH4III	ACNGT	1 cut(s)	1398
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	7 cut(s)	44, 338, 660, 806, 841, 890, 1230
HpyF10VI	GCNNNNNNNGC	5 cut(s)	666, 1091, 1193, 1324, 1333
HpyF3I	CTNAG	8 cut(s)	216, 405, 440, 984, 1048, 1140, 1223, 1290
HpySE526I	ACGT	1 cut(s)	643
Hsp92II	CATG	5 cut(s)	188, 623, 749, 944, 961
HspAI	GCGC	2 cut(s)	1085, 1327
Ksp22I	TGATCA	1 cut(s)	48
LmnI	GCTCC	3 cut(s)	731, 985, 1315
LweI	GCATC	2 cut(s)	598, 1217
MaeI	CTAG	3 cut(s)	650, 951, 1191
MaeII	ACGT	1 cut(s)	643
MaeIII	GTNAC	5 cut(s)	203, 408, 626, 918, 943
MbiI	CCGCTC	1 cut(s)	1318
MboII	GAAGA	8 cut(s)	119, 120, 283, 638, 728, 1077, 1135, 1163
MflI	RGATCY	6 cut(s)	15, 110, 445, 558, 1069, 1136
MhlI	GDGCHC	1 cut(s)	1198
MluCI	AATT	3 cut(s)	245, 256, 1105
MlyI	GAGTC	5 cut(s)	416, 547, 963, 1273, 1295
Mph1103I	ATGCAT	1 cut(s)	1232
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	3 cut(s)	12, 122, 255
MslI	CAYNNNNRTG	1 cut(s)	1225
MspCI	CTTAAG	2 cut(s)	11, 121
MspI	CCGG	5 cut(s)	301, 343, 999, 1062, 1370
MvnI	CGCG	2 cut(s)	1085, 1087
MwoI	GCNNNNNNNGC	5 cut(s)	666, 1091, 1193, 1324, 1333
NlaIII	CATG	5 cut(s)	188, 623, 749, 944, 961
NlaIV	GGNNCC	1 cut(s)	710
NmuCI	GTSAC	3 cut(s)	408, 626, 943
NsbI	TGCGCA	1 cut(s)	1328
NsiI	ATGCAT	1 cut(s)	1232
NspI	RCATGY	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	1 cut(s)	822
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	4 cut(s)	236, 468, 882, 1241
PinAI	ACCGGT	2 cut(s)	342, 1369
PkrI	GCNGC	1 cut(s)	1089
PleI	GAGTC	5 cut(s)	415, 546, 962, 1272, 1294
PpsI	GAGTC	5 cut(s)	415, 546, 962, 1272, 1294
PspN4I	GGNNCC	1 cut(s)	710
PsrI	GAACNNNNNNTAC	2 cut(s)	54, 86
PsuI	RGATCY	6 cut(s)	15, 110, 445, 558, 1069, 1136
RsaI	GTAC	5 cut(s)	63, 642, 1028, 1209, 1305
RsaNI	GTAC	5 cut(s)	62, 641, 1027, 1208, 1304
RseI	CAYNNNNRTG	1 cut(s)	1225
SaqAI	TTAA	3 cut(s)	12, 122, 255
SatI	GCNGC	1 cut(s)	1088
ScaI	AGTACT	1 cut(s)	1209
SchI	GAGTC	5 cut(s)	416, 547, 963, 1273, 1295
SduI	GDGCHC	1 cut(s)	1198
SfaNI	GCATC	2 cut(s)	598, 1217
SfcI	CTRYAG	1 cut(s)	612
SmiMI	CAYNNNNRTG	1 cut(s)	1225
SmlI	CTYRAG	3 cut(s)	11, 121, 449
SmoI	CTYRAG	3 cut(s)	11, 121, 449
Sse9I	AATT	3 cut(s)	245, 256, 1105
SsiI	CCGC	2 cut(s)	1087, 1318
SspMI	CTAG	3 cut(s)	650, 951, 1191
StyI	CCWWGG	2 cut(s)	415, 795
TaaI	ACNGT	1 cut(s)	1398
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	6 cut(s)	180, 210, 769, 825, 857, 873
TasI	AATT	3 cut(s)	245, 256, 1105
TatI	WGTACW	2 cut(s)	1026, 1207
TauI	GCSGC	1 cut(s)	1090
TfiI	GAWTC	4 cut(s)	236, 468, 882, 1241
Tru1I	TTAA	3 cut(s)	12, 122, 255
Tru9I	TTAA	3 cut(s)	12, 122, 255
TscAI	CASTG	3 cut(s)	51, 790, 1203
TseFI	GTSAC	3 cut(s)	408, 626, 943
Tsp45I	GTSAC	3 cut(s)	408, 626, 943
TspDTI	ATGAA	8 cut(s)	66, 237, 249, 342, 713, 752, 788, 1026
TspGWI	ACGGA	1 cut(s)	744
TspRI	CASTG	3 cut(s)	51, 790, 1203
Vha464I	CTTAAG	2 cut(s)	11, 121
XapI	RAATTY	2 cut(s)	245, 1105
XceI	RCATGY	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	3 cut(s)	650, 951, 1191
ZrmI	AGTACT	1 cut(s)	1209
Zsp2I	ATGCAT	1 cut(s)	1232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.