Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002303

Physical Location & Seq

Genomic Coordinates Reverse (-)

37531054 .. 37533707

Gene Structure 2654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0217200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2199 bp

ATGTCAACCCTACCCTGCACCACCTTATCCCTCCCTCACCACCCAAACCCAAAACCAAGCCCAACAATCCTAACCACCACACCCACAACCCTCTTCACAGCCCTCTCCTCCTCCACCAACCTCAAGCACCTCAAACAAGTCCACGCCCAAATCCTCAAATCCAACCTCGACCGCTCCGACTCTCTTCTCTTCAAACTCCTCCTCTCCTCCTTCACCCTCTCCCCGACCCTCCACTACCCCCTATCCCTCTTCACCCAAATCCCGAAACCCCAAACCCATCTCTGCAACAAGCTCCTGCGTGAGCTTTCGCGGTGCCGTGAACCCGAAAAGGCCCTCTTGGTTTATGAGAGGATGAGGAGGGAGGGCGTGGCTCTCGACAGGTTCAGCTTCCCGCCGCTGTTGAAGGCCGTGTCGAGAGCTTCGGCTCTGGCTGAGGGGACAGAGATTCATGGGCTTGCGTGCAAGTTGGGCTTTGATTCGGACCCGTTTGTGCAGACGGTTTTGGTCAGAATGTACGCTGCCTGTGGGAGGGTTATGGATGCACGCCTGGTGTTTGATAAAATGCCTAGCCGGGATGTTGTTGCCTGGAGTATTATGATTGATGGGTACTGTCAGAGTGGCCATTATGACATTGCATTCAACCTCTTTGAAGACATGAAGAATTCGGATGTGAAGCCAGATGAGATGATTCTTTCCACCATTCTTTCTGCCTGCGGCCGTGCTGGGAAGTTAACTTATGGGAAAGCAGTCCATGACTTCATTGAGGAGAATGATATTGTGGTCGACTCTCATATACTGAGTGCTCTTATTGCCATGTATGCTGGTAGTGGTTCTATGGATTTGGCTCAGCGATTGTTTGACAAGACGTCAGAGAAAAGTTTCATAGTTGCAACTGCTATGGTCTCTGGTTATTCAAAACTAGGACGGGTTGAAGATGCGCGCTTGATTTTTGACCAAATTGTTCAGAAGGACTTGGTCTGTTGGAGTGCTATGATATCTGGTTATGCTGAAACTGATCGACCTCAAGAGGCACTTAGATTGTTTTCTGAAATGGAAGTTTCGGGATTAAGACCTGATCAAGTCACCATGTTGAGTGTCATTTCAGCTTGTGCTCATCTTGGTGCACTGGATCAAGCTAAATGGGTTCATTTATATGTTGATAAGAATGGATTTGGTGGAGCTTTGTCTGTCAACAATGCCCTCATTGATATGTATGCGAAATGTGGAAACTTGGAAAGAGCAAGAGGGGTGTTTCAGAAAATGCCGAGAAGAAATGTGATAACTTGGACCACTATGATTAGCGCCTTTGCCATGCATGGGGATGCTAGTAATGCACTCAACTTCTTCAATCAAATGAAACTTGCCAATGTAGAGCCCAATGGGGTTACATTTGTGGGTGTGCTTTATGCTTGTAGTCATGCCGGGTTAGTTGAGGAGGGTAGACAAATCTTTGCATCGATGGTGAATGAATATAATATCACTCCTAAACACGAGCACTATGGTTGCATGGTTGACCTCTATGGCCGTGCAAATCTCTTGAGAGAAGCTCTTGAGGTTATAGAGACAATGCCCTTGGCACCAAATGTTGTCATTTGGGGATCTTTGATGGCAGCTTGTCAGATTCATGGTGAGATTGAATTAGGAGAATTTGCTGCAAAACAGGTTCTTGAGCTGGAACCAGATCATGATGGAGCCCTTGTCGTCTTATCAAACATCTATGCGAAAGAAAGAAGATGGGAAGATGTTGGTATGGTGAGGAAAATAATGAAAAATAATGGCATCTCAAAGCAGAGGGGGTGTAGCAGGATAGAACTGAAGAATGAGGTACATGAGTTTTTAATGGCAGATAGAAGTCATAAACAAGCAGATCAGATCTATGAGAAGCTAGATGAGGTAGTTAGGGAGGTGAAGCAAGTCGGTTATACGCCCAATACATGTAACGTTTTGGTTGATTTAGAAGAGGAGGAAAAGAAAGAAGCGATTCTCTGGCACAGTGAGAAGTTGGCTCTTTCTTTTGGTTTGATAGGTGCAAAAAACGGTTCTTGCATTCGCATAGTTAAGAATCTCAGGATTTGTGAAGATTGCCATACTTTCATGAAGTTGGCTTCAAAGGTGTATCATAGAGAGATTATTGTCAGAGATAGGACTAGGTTTCACCATTACAAACATGGTTACTGTTCTTGTAAAGACTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

732

Amino Acids

82.25

Weight (kDa)

6.95

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	99 - 243	6.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	191 - 238	2e-12	PPR repeat family
PPR_1	PF12854	191 - 220	2.4e-08	PPR repeat
PPR	PF01535	194 - 223	9.5e-08	PPR repeat
PPR_2	PF13041	324 - 372	4.9e-11	PPR repeat family
PPR	PF01535	326 - 356	4.8e-07	PPR repeat
PPR_2	PF13041	424 - 472	1.5e-10	PPR repeat family
PPR	PF01535	427 - 455	8.7e-06	PPR repeat
E_motif	PF20431	542 - 604	2.2e-20	E motif
Eplus_motif	PF20430	609 - 635	4.9e-06	E+ motif
DYW_deaminase	PF14432	640 - 732	1.6e-38	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09440 AT1G09440 AT1G56720 AT1G56720 AT1G56720 AT1G56720
fragaria_vesca	FvH4_4g21450 FvH4_4g21450 FvH4_6g08381
malus_domestica	MD04G1187400.v1.1 MD12G1201000.v1.1 MD13G1141100.v1.1 MD16G1137200.v1.1
prunus_persica	Prupe.1G106300_v2.0.a1 Prupe.1G106300_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1
pyrus_communis	pycom04g16550 pycom12g18730 pycom13g12260 pycom16g12090 pycom16g12100
rosa_chinensis	RchiOBHm_Chr3g0458331 RchiOBHm_Chr4g0427381
rosa_laevigata	RLG00000007248 RLG00000025168
rosa_multiflora	Rmu_sc0003813.1_g000020 Rmu_sc0007338.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369050 Rroxscaffold_6G00421160
rosa_rugosa	Rorug03G0025800 Rorug03G0025800 Rorug04G0217200 Rorug04G0217300 Rorug04G0217400 Rorug04G0217500
rosa_samantha	Rh3BG089600 Rh4AG273600 Rh4DG276600
rosa_wichuraiana	Rw3G007360 Rw4G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	869
AccB1I	GGYRCC	2 cut(s)	312, 1576
AccBSI	CCGCTC	1 cut(s)	174
AccI	GTMKAC	2 cut(s)	783, 1441
AccII	CGCG	2 cut(s)	310, 940
AciI	CCGC	5 cut(s)	172, 310, 392, 395, 714
AclI	AACGTT	1 cut(s)	1941
AclWI	GGATC	2 cut(s)	1137, 1606
AcoI	YGGCCR	3 cut(s)	619, 715, 1522
AcsI	RAATTY	2 cut(s)	661, 1646
AcuI	CTGAAG	1 cut(s)	1835
AcyI	GRCGYC	1 cut(s)	866
AfaI	GTAC	3 cut(s)	515, 608, 1827
AfiI	CCNNNNNNNGG	2 cut(s)	528, 1317
AflIII	ACRYGT	1 cut(s)	1934
AgsI	TTSAA	9 cut(s)	193, 403, 640, 650, 915, 932, 1348, 1637, 2109
AhdI	GACNNNNNGTC	1 cut(s)	865
AjnI	CCWGG	2 cut(s)	546, 584
Alw21I	GWGCWC	4 cut(s)	805, 1114, 1126, 1497
Alw26I	GTCTC	2 cut(s)	907, 1556
Alw44I	GTGCAC	1 cut(s)	1122
AlwI	GGATC	2 cut(s)	1137, 1606
AoxI	GGCC	5 cut(s)	330, 405, 619, 715, 1522
ApaLI	GTGCAC	1 cut(s)	1122
ApeKI	GCWGC	3 cut(s)	518, 1610, 1652
ApoI	RAATTY	2 cut(s)	661, 1646
Asp700I	GAANNNNTTC	2 cut(s)	878, 1980
AspLEI	GCGC	3 cut(s)	940, 942, 1304
AspS9I	GGNCC	3 cut(s)	331, 481, 1287
AsuC2I	CCSGG	2 cut(s)	572, 1423
AsuHPI	GGTGA	9 cut(s)	29, 205, 244, 1075, 1474, 1640, 1765, 1918, 2147
AvaII	GGWCC	2 cut(s)	481, 1287
BaeGI	GKGCMC	1 cut(s)	1126
BaeI	ACNNNNGTAYC	2 cut(s)	1817, 1850
BalI	TGGCCA	1 cut(s)	621
BanI	GGYRCC	2 cut(s)	312, 1576
BanII	GRGCYC	2 cut(s)	1377, 1696
BauI	CACGAG	1 cut(s)	1490
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	4 cut(s)	805, 1114, 1126, 1497
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	3 cut(s)	505, 1622, 1639
BccI	CCATC	6 cut(s)	285, 596, 1453, 1600, 1682, 1728
BceAI	ACGGC	4 cut(s)	300, 392, 702, 1509
BciT130I	CCWGG	2 cut(s)	548, 586
BclI	TGATCA	1 cut(s)	1075
BcnI	CCSGG	2 cut(s)	572, 1423
BcoDI	GTCTC	2 cut(s)	907, 1556
BfaI	CTAG	5 cut(s)	567, 920, 1326, 1886, 2148
BfoI	RGCGCY	1 cut(s)	1305
BglII	AGATCT	1 cut(s)	1872
BisI	GCNGC	5 cut(s)	395, 519, 715, 1611, 1653
BlpI	GCTNAGC	1 cut(s)	846
BlsI	GCNGC	5 cut(s)	396, 520, 716, 1612, 1654
Bme1390I	CCNGG	4 cut(s)	548, 572, 586, 1423
Bme18I	GGWCC	2 cut(s)	481, 1287
BmeRI	GACNNNNNGTC	1 cut(s)	865
BmgT120I	GGNCC	3 cut(s)	331, 481, 1287
BmiI	GGNNCC	5 cut(s)	314, 483, 1578, 1677, 1693
BmrFI	CCNGG	4 cut(s)	548, 572, 586, 1423
BmsI	GCATC	5 cut(s)	529, 925, 1312, 1463, 1788
BpiI	GAAGAC	1 cut(s)	657
BplI	GAGNNNNNCTC	2 cut(s)	1531, 1563
BpmI	CTGGAG	1 cut(s)	607
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu1102I	GCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	5 cut(s)	107, 1008, 1558, 1571, 1688
BpuMI	CCSGG	2 cut(s)	572, 1423
Bsa29I	ATCGAT	1 cut(s)	1457
BsaHI	GRCGYC	1 cut(s)	866
BsaI	GGTCTC	1 cut(s)	907
BsaJI	CCNNGG	1 cut(s)	1572
BsaXI	ACNNNNNCTCC	2 cut(s)	1683, 1713
Bsc4I	CCNNNNNNNGG	2 cut(s)	528, 1317
Bse1I	ACTGG	2 cut(s)	1131, 2198
Bse3DI	GCAATG	1 cut(s)	630
BseBI	CCWGG	2 cut(s)	548, 586
BseCI	ATCGAT	1 cut(s)	1457
BseDI	CCNNGG	1 cut(s)	1572
BseGI	GGATG	5 cut(s)	357, 544, 580, 673, 1327
BseLI	CCNNNNNNNGG	2 cut(s)	528, 1317
BseMI	GCAATG	1 cut(s)	630
BseMII	CTCAG	4 cut(s)	423, 788, 860, 2080
BseNI	ACTGG	2 cut(s)	1131, 2198
BsePI	GCGCGC	1 cut(s)	938
BseRI	GAGGAG	9 cut(s)	97, 100, 188, 191, 196, 370, 779, 1448, 1976
BseSI	GKGCMC	1 cut(s)	1126
BseX3I	CGGCCG	1 cut(s)	715
BseXI	GCAGC	3 cut(s)	505, 1622, 1639
BseYI	CCCAGC	1 cut(s)	722
BsgI	GTGCAG	1 cut(s)	512
Bsh1236I	CGCG	2 cut(s)	310, 940
Bsh1285I	CGRYCG	2 cut(s)	172, 718
BshFI	GGCC	5 cut(s)	332, 407, 621, 717, 1524
BshNI	GGYRCC	2 cut(s)	312, 1576
BshVI	ATCGAT	1 cut(s)	1457
BsiEI	CGRYCG	2 cut(s)	172, 718
BsiHKAI	GWGCWC	4 cut(s)	805, 1114, 1126, 1497
BsiSI	CCGG	2 cut(s)	571, 1422
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	528, 1317
BsmAI	GTCTC	2 cut(s)	907, 1556
BsmFI	GGGAC	1 cut(s)	451
BsmI	GAATGC	2 cut(s)	635, 2046
BsnI	GGCC	5 cut(s)	332, 407, 621, 717, 1524
Bso31I	GGTCTC	1 cut(s)	907
Bsp1286I	GDGCHC	6 cut(s)	805, 1114, 1126, 1377, 1497, 1696
Bsp143I	GATC	7 cut(s)	1015, 1075, 1129, 1598, 1681, 1867, 1872
Bsp1720I	GCTNAGC	1 cut(s)	846
BspACI	CCGC	5 cut(s)	172, 310, 392, 395, 714
BspANI	GGCC	5 cut(s)	332, 407, 621, 717, 1524
BspCNI	CTCAG	4 cut(s)	424, 789, 859, 2079
BspDI	ATCGAT	1 cut(s)	1457
BspFNI	CGCG	2 cut(s)	310, 940
BspHI	TCATGA	2 cut(s)	1684, 2094
BspLI	GGNNCC	5 cut(s)	314, 483, 1578, 1677, 1693
BspPI	GGATC	2 cut(s)	1137, 1606
BspT107I	GGYRCC	2 cut(s)	312, 1576
BspTNI	GGTCTC	1 cut(s)	907
BsrBI	CCGCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	630
BsrI	ACTGG	2 cut(s)	1131, 2198
BssECI	CCNNGG	1 cut(s)	1572
BssHII	GCGCGC	1 cut(s)	938
BssMI	GATC	7 cut(s)	1015, 1075, 1129, 1598, 1681, 1867, 1872
BssNI	GRCGYC	1 cut(s)	866
BssSI	CACGAG	1 cut(s)	1490
BssT1I	CCWWGG	1 cut(s)	1572
Bst2BI	CACGAG	1 cut(s)	1490
Bst2UI	CCWGG	2 cut(s)	548, 586
Bst4CI	ACNGT	5 cut(s)	499, 611, 1994, 2039, 2177
Bst6I	CTCTTC	5 cut(s)	98, 189, 194, 254, 1953
BstACI	GRCGYC	1 cut(s)	866
BstC8I	GCNNGC	5 cut(s)	456, 460, 544, 712, 940
BstDEI	CTNAG	5 cut(s)	432, 797, 846, 1034, 2066
BstENI	CCTNNNNNAGG	1 cut(s)	526
BstF5I	GGATG	5 cut(s)	357, 544, 580, 673, 1327
BstFNI	CGCG	2 cut(s)	310, 940
BstH2I	RGCGCY	1 cut(s)	1305
BstHHI	GCGC	3 cut(s)	940, 942, 1304
BstKTI	GATC	7 cut(s)	1018, 1078, 1132, 1601, 1684, 1870, 1875
BstMAI	GTCTC	2 cut(s)	907, 1556
BstMBI	GATC	7 cut(s)	1015, 1075, 1129, 1598, 1681, 1867, 1872
BstMCI	CGRYCG	2 cut(s)	172, 718
BstMWI	GCNNNNNNNGC	4 cut(s)	468, 809, 818, 1331
BstNI	CCWGG	2 cut(s)	548, 586
BstNSI	RCATGY	1 cut(s)	1938
BstSCI	CCNGG	4 cut(s)	546, 570, 584, 1421
BstSLI	GKGCMC	1 cut(s)	1126
BstUI	CGCG	2 cut(s)	310, 940
BstV1I	GCAGC	3 cut(s)	505, 1622, 1639
BstV2I	GAAGAC	1 cut(s)	657
BstX2I	RGATCY	2 cut(s)	1598, 1872
BstYI	RGATCY	2 cut(s)	1598, 1872
BstZI	CGGCCG	1 cut(s)	715
Bsu15I	ATCGAT	1 cut(s)	1457
BsuRI	GGCC	5 cut(s)	332, 407, 621, 717, 1524
BsuTUI	ATCGAT	1 cut(s)	1457
BtsCI	GGATG	5 cut(s)	357, 544, 580, 673, 1327
BtsIMutI	CAGTG	2 cut(s)	1124, 1999
Cac8I	GCNNGC	5 cut(s)	456, 460, 544, 712, 940
CciI	TCATGA	2 cut(s)	1684, 2094
CfoI	GCGC	3 cut(s)	940, 942, 1304
Cfr13I	GGNCC	3 cut(s)	331, 481, 1287
ClaI	ATCGAT	1 cut(s)	1457
Csp6I	GTAC	3 cut(s)	514, 607, 1826
CviQI	GTAC	3 cut(s)	514, 607, 1826
DdeI	CTNAG	5 cut(s)	432, 797, 846, 1034, 2066
DpnI	GATC	7 cut(s)	1017, 1077, 1131, 1600, 1683, 1869, 1874
DpnII	GATC	7 cut(s)	1015, 1075, 1129, 1598, 1681, 1867, 1872
DriI	GACNNNNNGTC	1 cut(s)	865
EaeI	YGGCCR	3 cut(s)	619, 715, 1522
EagI	CGGCCG	1 cut(s)	715
Eam1104I	CTCTTC	5 cut(s)	98, 189, 194, 254, 1953
Eam1105I	GACNNNNNGTC	1 cut(s)	865
EarI	CTCTTC	5 cut(s)	98, 189, 194, 254, 1953
EclXI	CGGCCG	1 cut(s)	715
Eco130I	CCWWGG	1 cut(s)	1572
Eco24I	GRGCYC	2 cut(s)	1377, 1696
Eco31I	GGTCTC	1 cut(s)	907
Eco32I	GATATC	1 cut(s)	996
Eco47I	GGWCC	2 cut(s)	481, 1287
Eco52I	CGGCCG	1 cut(s)	715
Eco57I	CTGAAG	1 cut(s)	1835
EcoNI	CCTNNNNNAGG	1 cut(s)	526
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	661
EcoRII	CCWGG	2 cut(s)	546, 584
EcoRV	GATATC	1 cut(s)	996
EcoT14I	CCWWGG	1 cut(s)	1572
EcoT22I	ATGCAT	1 cut(s)	1317
EcoT38I	GRGCYC	2 cut(s)	1377, 1696
ErhI	CCWWGG	1 cut(s)	1572
FalI	AAGNNNNNCTT	6 cut(s)	320, 352, 455, 487, 1017, 1049
FaqI	GGGAC	1 cut(s)	451
FauI	CCCGC	1 cut(s)	399
FbaI	TGATCA	1 cut(s)	1075
FblI	GTMKAC	2 cut(s)	783, 1441
Fnu4HI	GCNGC	5 cut(s)	395, 519, 715, 1611, 1653
FokI	GGATG	5 cut(s)	364, 551, 587, 680, 1334
FriOI	GRGCYC	2 cut(s)	1377, 1696
Fsp4HI	GCNGC	5 cut(s)	395, 519, 715, 1611, 1653
FspBI	CTAG	5 cut(s)	567, 920, 1326, 1886, 2148
GlaI	GCGC	3 cut(s)	939, 941, 1303
GluI	GCNGC	5 cut(s)	395, 519, 715, 1611, 1653
GsaI	CCCAGC	1 cut(s)	726
GsuI	CTGGAG	1 cut(s)	607
HaeII	RGCGCY	1 cut(s)	1305
HaeIII	GGCC	5 cut(s)	332, 407, 621, 717, 1524
HapII	CCGG	2 cut(s)	571, 1422
HhaI	GCGC	3 cut(s)	940, 942, 1304
Hin1I	GRCGYC	1 cut(s)	866
Hin6I	GCGC	3 cut(s)	938, 940, 1302
HinP1I	GCGC	3 cut(s)	938, 940, 1302
HincII	GTYRAC	5 cut(s)	6, 732, 784, 1192, 1513
HindII	GTYRAC	5 cut(s)	6, 732, 784, 1192, 1513
HinfI	GANTC	8 cut(s)	179, 445, 476, 688, 785, 1621, 1981, 2062
HpaI	GTTAAC	1 cut(s)	732
HpaII	CCGG	2 cut(s)	571, 1422
HphI	GGTGA	9 cut(s)	29, 205, 244, 1075, 1474, 1640, 1765, 1918, 2147
Hpy166II	GTNNAC	9 cut(s)	6, 142, 320, 732, 784, 1124, 1192, 1442, 1513
Hpy8I	GTNNAC	9 cut(s)	6, 142, 320, 732, 784, 1124, 1192, 1442, 1513
HpyAV	CCTTC	3 cut(s)	220, 397, 961
HpyCH4III	ACNGT	5 cut(s)	499, 611, 1994, 2039, 2177
HpyCH4IV	ACGT	2 cut(s)	866, 1941
HpyF10VI	GCNNNNNNNGC	4 cut(s)	468, 809, 818, 1331
HpyF3I	CTNAG	5 cut(s)	432, 797, 846, 1034, 2066
HpySE526I	ACGT	2 cut(s)	866, 1941
Hsp92I	GRCGYC	1 cut(s)	866
HspAI	GCGC	3 cut(s)	938, 940, 1302
Ksp22I	TGATCA	1 cut(s)	1075
KspAI	GTTAAC	1 cut(s)	732
Kzo9I	GATC	7 cut(s)	1015, 1075, 1129, 1598, 1681, 1867, 1872
LmnI	GCTCC	4 cut(s)	179, 297, 1178, 1691
Lsp1109I	GCAGC	3 cut(s)	505, 1622, 1639
LweI	GCATC	5 cut(s)	529, 925, 1312, 1463, 1788
MaeI	CTAG	5 cut(s)	567, 920, 1326, 1886, 2148
MaeII	ACGT	2 cut(s)	866, 1941
MaeIII	GTNAC	4 cut(s)	1081, 1384, 1937, 2171
MalI	GATC	7 cut(s)	1017, 1077, 1131, 1600, 1683, 1869, 1874
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	7 cut(s)	1015, 1075, 1129, 1598, 1681, 1867, 1872
MflI	RGATCY	2 cut(s)	1598, 1872
MhlI	GDGCHC	6 cut(s)	805, 1114, 1126, 1377, 1497, 1696
MlsI	TGGCCA	1 cut(s)	621
MluCI	AATT	4 cut(s)	661, 957, 1637, 1646
MluNI	TGGCCA	1 cut(s)	621
MlyI	GAGTC	2 cut(s)	173, 779
MmeI	TCCRAC	3 cut(s)	186, 201, 962
Mox20I	TGGCCA	1 cut(s)	621
Mph1103I	ATGCAT	1 cut(s)	1317
MroXI	GAANNNNTTC	2 cut(s)	878, 1980
MscI	TGGCCA	1 cut(s)	621
MseI	TTAA	4 cut(s)	731, 1067, 1838, 2058
MslI	CAYNNNNRTG	4 cut(s)	1119, 1152, 1208, 1320
Msp20I	TGGCCA	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	2 cut(s)	571, 1422
MspR9I	CCNGG	4 cut(s)	548, 572, 586, 1423
Mva1269I	GAATGC	2 cut(s)	635, 2046
MvaI	CCWGG	2 cut(s)	548, 586
MvnI	CGCG	2 cut(s)	310, 940
MwoI	GCNNNNNNNGC	4 cut(s)	468, 809, 818, 1331
NciI	CCSGG	2 cut(s)	572, 1423
NdeII	GATC	7 cut(s)	1015, 1075, 1129, 1598, 1681, 1867, 1872
NlaIV	GGNNCC	5 cut(s)	314, 483, 1578, 1677, 1693
NmeAIII	GCCGAG	1 cut(s)	1290
NmuCI	GTSAC	1 cut(s)	1081
NsiI	ATGCAT	1 cut(s)	1317
NspI	RCATGY	1 cut(s)	1938
PagI	TCATGA	2 cut(s)	1684, 2094
PauI	GCGCGC	1 cut(s)	938
PciI	ACATGT	1 cut(s)	1934
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	2 cut(s)	635, 2046
PdmI	GAANNNNTTC	2 cut(s)	878, 1980
PfeI	GAWTC	6 cut(s)	445, 476, 688, 1621, 1981, 2062
PflFI	GACNNNGTC	1 cut(s)	974
PkrI	GCNGC	5 cut(s)	396, 520, 716, 1612, 1654
PleI	GAGTC	2 cut(s)	173, 779
PpsI	GAGTC	2 cut(s)	173, 779
PscI	ACATGT	1 cut(s)	1934
Psp1406I	AACGTT	1 cut(s)	1941
Psp6I	CCWGG	2 cut(s)	546, 584
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	546, 584
PspN4I	GGNNCC	5 cut(s)	314, 483, 1578, 1677, 1693
PspPI	GGNCC	3 cut(s)	331, 481, 1287
PsuI	RGATCY	2 cut(s)	1598, 1872
PsyI	GACNNNGTC	1 cut(s)	974
PteI	GCGCGC	1 cut(s)	938
RsaI	GTAC	3 cut(s)	515, 608, 1827
RsaNI	GTAC	3 cut(s)	514, 607, 1826
RseI	CAYNNNNRTG	4 cut(s)	1119, 1152, 1208, 1320
SalI	GTCGAC	1 cut(s)	782
SaqAI	TTAA	4 cut(s)	731, 1067, 1838, 2058
SatI	GCNGC	5 cut(s)	395, 519, 715, 1611, 1653
Sau3AI	GATC	7 cut(s)	1015, 1075, 1129, 1598, 1681, 1867, 1872
Sau96I	GGNCC	3 cut(s)	331, 481, 1287
SchI	GAGTC	2 cut(s)	173, 779
ScrFI	CCNGG	4 cut(s)	548, 572, 586, 1423
SduI	GDGCHC	6 cut(s)	805, 1114, 1126, 1377, 1497, 1696
SfaNI	GCATC	5 cut(s)	529, 925, 1312, 1463, 1788
SinI	GGWCC	2 cut(s)	481, 1287
SmiMI	CAYNNNNRTG	4 cut(s)	1119, 1152, 1208, 1320
SmlI	CTYRAG	5 cut(s)	122, 1023, 1537, 1550, 1667
SmoI	CTYRAG	5 cut(s)	122, 1023, 1537, 1550, 1667
Sse9I	AATT	4 cut(s)	661, 957, 1637, 1646
SsiI	CCGC	5 cut(s)	172, 310, 392, 395, 714
SspMI	CTAG	5 cut(s)	567, 920, 1326, 1886, 2148
StyD4I	CCNGG	4 cut(s)	546, 570, 584, 1421
StyI	CCWWGG	1 cut(s)	1572
TaaI	ACNGT	5 cut(s)	499, 611, 1994, 2039, 2177
TaiI	ACGT	2 cut(s)	869, 1944
TaqI	TCGA	6 cut(s)	168, 375, 413, 783, 1018, 1457
TasI	AATT	4 cut(s)	661, 957, 1637, 1646
TauI	GCSGC	2 cut(s)	397, 717
TfiI	GAWTC	6 cut(s)	445, 476, 688, 1621, 1981, 2062
Tru1I	TTAA	4 cut(s)	731, 1067, 1838, 2058
Tru9I	TTAA	4 cut(s)	731, 1067, 1838, 2058
TscAI	CASTG	2 cut(s)	1131, 1999
TseFI	GTSAC	1 cut(s)	1081
TseI	GCWGC	3 cut(s)	518, 1610, 1652
Tsp45I	GTSAC	1 cut(s)	1081
TspRI	CASTG	2 cut(s)	1131, 1999
Tth111I	GACNNNGTC	1 cut(s)	974
VneI	GTGCAC	1 cut(s)	1122
VpaK11BI	GGWCC	2 cut(s)	481, 1287
XagI	CCTNNNNNAGG	1 cut(s)	526
XapI	RAATTY	2 cut(s)	661, 1646
XceI	RCATGY	1 cut(s)	1938
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2165
XmiI	GTMKAC	2 cut(s)	783, 1441
XmnI	GAANNNNTTC	2 cut(s)	878, 1980
XspI	CTAG	5 cut(s)	567, 920, 1326, 1886, 2148
ZraI	GACGTC	1 cut(s)	867
Zsp2I	ATGCAT	1 cut(s)	1317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.