Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002303

Physical Location & Seq

Genomic Coordinates Reverse (-)

37597486 .. 37599406

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0217400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCAAAGGCTGAGCAAAATGGTCCCATTCTTGTTGATCTGGAAAAACAGAAGGCTGAAGTTCAGACAATTGGAAAAGAATGCCAATTGGCTTCTGGTTCAATCGATAATGTTGTGGCTATTGCAACAATTATAGAAGTCAATGACGAAAGCAACAGCCAGCTTATTCATGGTGTTCCATTGGGCGAAGGAAATAAGCGTGTCTCGATTGTACGCTCTCTAGTGGATGAAGCTAAGCTTCCATTCCCAATCAAGGATGAAATAGTGACTGTTCGTGATGCGCTCAGGACTTATGTGGCCTGGCCTGAAAACATGAAAATTTTTTCAGCAGAGTGTAAGAAAGAGTTGCCACCAAAGAGTAAAGGACTGAAGAAGAGAAAAAGGACTAAAGAAAATGATGATGATGATGAGGAAGATCTGGACATGACATCATTGCCACCAACTATTCCTCCATCCCTTAAAGCTGTATGCAGTTGGGCCAAAGAAACATTGAGAAATGGGAACACCATTGTCTGCAACTACGATGAAAAGATTTTTGGACATGCGTCCAAAATTTTTGTGAGTAAACACGATATTAATAACTTTGTTACCATGAAGGAAGTATCGGGCAGCTGTATATGCATCTATATGAGCTATCTTTATGGTGTGTTGAAAAAATCGAAGATGGTGGACATGGTCGGATTTATGGACACTACTGATATTGGTTCCATTGGGTGTGGTAATCCAATTGAGCGTTCCCCTGCAATAGCTGATAGGTTGAAACGAGCAAAGCGTGGCCAGATTATTTTGTTGCCATATAACTCTGGATGTCATTGGATGCTGACTGTAATAAATGCTGAAGAAGACACTGTCTACTTCATGGATCCATTAAAGAGGAGACTTGTTACAGGAGAATGGAAGGACATTGTCGATAACGGCATCAAAATACATAATGCTCAAGTCAAAAGGCAAGGCAGAAAAGCAACTACCTGGAAAAACTGTGCGGGTATCTCGGAGCAAAAGACCGACAAAGATTGTGGATACTTTATAATGAGATACATGAAGGAAATAGTGGAAGATATGAATTTGGACTTTTTCAGCAAGGTAATTAAAACTAGTTTATATTGCTTGGATTGTGGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

374

Amino Acids

42.11

Weight (kDa)

7.87

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8039	PF26133	25 - 105	3.1e-09	Domain of unknown function (DUF8039)
Peptidase_C48	PF02902	260 - 360	1.1e-10	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09440 AT1G09440 AT1G56720 AT1G56720 AT1G56720 AT1G56720
fragaria_vesca	FvH4_4g21450 FvH4_4g21450 FvH4_6g08381
malus_domestica	MD04G1187400.v1.1 MD12G1201000.v1.1 MD13G1141100.v1.1 MD16G1137200.v1.1
prunus_persica	Prupe.1G106300_v2.0.a1 Prupe.1G106300_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1
pyrus_communis	pycom04g16550 pycom12g18730 pycom13g12260 pycom16g12090 pycom16g12100
rosa_chinensis	RchiOBHm_Chr3g0458331 RchiOBHm_Chr4g0427381
rosa_laevigata	RLG00000007248 RLG00000025168
rosa_multiflora	Rmu_sc0003813.1_g000020 Rmu_sc0007338.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369050 Rroxscaffold_6G00421160
rosa_rugosa	Rorug03G0025800 Rorug03G0025800 Rorug04G0217200 Rorug04G0217300 Rorug04G0217400 Rorug04G0217500
rosa_samantha	Rh3BG089600 Rh4AG273600 Rh4DG276600
rosa_wichuraiana	Rw3G007360 Rw4G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1028
AccI	GTMKAC	1 cut(s)	852
AciI	CCGC	1 cut(s)	983
AclWI	GGATC	2 cut(s)	857, 870
AcoI	YGGCCR	1 cut(s)	775
AcsI	RAATTY	3 cut(s)	318, 552, 1063
AcuI	CTGAAG	3 cut(s)	78, 389, 858
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	102, 652, 760
AhlI	ACTAGT	1 cut(s)	1094
AjnI	CCWGG	2 cut(s)	299, 968
AjuI	GAANNNNNNNTTGG	4 cut(s)	519, 551, 718, 750
AluBI	AGCT	7 cut(s)	163, 233, 238, 464, 612, 633, 749
AluI	AGCT	7 cut(s)	163, 233, 238, 464, 612, 633, 749
Alw26I	GTCTC	2 cut(s)	208, 871
AlwI	GGATC	2 cut(s)	857, 870
AoxI	GGCC	4 cut(s)	297, 302, 477, 775
ApeKI	GCWGC	1 cut(s)	609
ApoI	RAATTY	3 cut(s)	318, 552, 1063
AseI	ATTAAT	1 cut(s)	576
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	2 cut(s)	23, 477
AvaII	GGWCC	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	777
BamHI	GGATCC	1 cut(s)	862
BbsI	GAAGAC	1 cut(s)	849
BbvI	GCAGC	1 cut(s)	621
BccI	CCATC	2 cut(s)	460, 658
BceAI	ACGGC	1 cut(s)	931
BciT130I	CCWGG	2 cut(s)	301, 970
BciVI	GTATCC	1 cut(s)	1013
BcoDI	GTCTC	2 cut(s)	208, 871
BcuI	ACTAGT	1 cut(s)	1094
BfaI	CTAG	2 cut(s)	221, 1095
BfuI	GTATCC	1 cut(s)	1013
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	1 cut(s)	610
BlpI	GCTNAGC	2 cut(s)	12, 234
BlsI	GCNGC	1 cut(s)	611
Bme1390I	CCNGG	2 cut(s)	301, 970
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	23, 477
BmiI	GGNNCC	3 cut(s)	25, 706, 864
BmrFI	CCNGG	2 cut(s)	301, 970
BmsI	GCATC	4 cut(s)	268, 630, 807, 927
BoxI	GACNNNNGTC	1 cut(s)	544
BpiI	GAAGAC	1 cut(s)	849
Bpu10I	CCTNAGC	1 cut(s)	284
Bpu1102I	GCTNAGC	2 cut(s)	12, 234
BpuEI	CTTGAG	1 cut(s)	921
Bsa29I	ATCGAT	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	431
BseBI	CCWGG	2 cut(s)	301, 970
BseCI	ATCGAT	1 cut(s)	105
BseGI	GGATG	5 cut(s)	232, 262, 452, 812, 822
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	431
BseMII	CTCAG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	889
BseXI	GCAGC	1 cut(s)	621
BshFI	GGCC	4 cut(s)	299, 304, 479, 777
BshVI	ATCGAT	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	2 cut(s)	208, 871
BsmFI	GGGAC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	4 cut(s)	299, 304, 479, 777
Bsp143I	GATC	3 cut(s)	37, 415, 862
Bsp1720I	GCTNAGC	2 cut(s)	12, 234
BspACI	CCGC	1 cut(s)	983
BspANI	GGCC	4 cut(s)	299, 304, 479, 777
BspCNI	CTCAG	2 cut(s)	4, 297
BspDI	ATCGAT	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	25, 706, 864
BspPI	GGATC	2 cut(s)	857, 870
BsrDI	GCAATG	1 cut(s)	431
BssMI	GATC	3 cut(s)	37, 415, 862
Bst2UI	CCWGG	2 cut(s)	301, 970
Bst4CI	ACNGT	4 cut(s)	271, 826, 850, 980
Bst6I	CTCTTC	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	3 cut(s)	12, 234, 284
BstF5I	GGATG	5 cut(s)	232, 262, 452, 812, 822
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	3 cut(s)	40, 418, 865
BstMAI	GTCTC	2 cut(s)	208, 871
BstMBI	GATC	3 cut(s)	37, 415, 862
BstMWI	GCNNNNNNNGC	1 cut(s)	618
BstNI	CCWGG	2 cut(s)	301, 970
BstNSI	RCATGY	1 cut(s)	545
BstPAI	GACNNNNGTC	1 cut(s)	544
BstSCI	CCNGG	2 cut(s)	299, 968
BstV1I	GCAGC	1 cut(s)	621
BstV2I	GAAGAC	1 cut(s)	849
BstX2I	RGATCY	2 cut(s)	415, 862
BstYI	RGATCY	2 cut(s)	415, 862
Bsu15I	ATCGAT	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	1013
BsuRI	GGCC	4 cut(s)	299, 304, 479, 777
BsuTUI	ATCGAT	1 cut(s)	105
BtsCI	GGATG	5 cut(s)	232, 262, 452, 812, 822
BtsIMutI	CAGTG	1 cut(s)	846
Cac8I	GCNNGC	1 cut(s)	161
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	23, 477
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	212
CspCI	CAANNNNNGTGG	2 cut(s)	997, 1032
CviAII	CATG	8 cut(s)	170, 313, 424, 542, 592, 673, 859, 1039
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	3 cut(s)	12, 234, 284
DpnI	GATC	3 cut(s)	39, 417, 864
DpnII	GATC	3 cut(s)	37, 415, 862
EaeI	YGGCCR	1 cut(s)	775
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	23
Eco57I	CTGAAG	3 cut(s)	78, 389, 858
EcoRII	CCWGG	2 cut(s)	299, 968
EcoT22I	ATGCAT	1 cut(s)	623
FaeI	CATG	8 cut(s)	173, 316, 427, 545, 595, 676, 862, 1042
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	1 cut(s)	9
FatI	CATG	8 cut(s)	169, 312, 423, 541, 591, 672, 858, 1038
FauI	CCCGC	1 cut(s)	976
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	1 cut(s)	610
FokI	GGATG	5 cut(s)	239, 269, 439, 819, 829
Fsp4HI	GCNGC	1 cut(s)	610
FspBI	CTAG	2 cut(s)	221, 1095
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	610
HaeIII	GGCC	4 cut(s)	299, 304, 479, 777
HgaI	GACGC	1 cut(s)	534
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	8 cut(s)	173, 316, 427, 545, 595, 676, 862, 1042
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HindIII	AAGCTT	1 cut(s)	236
Hpy166II	GTNNAC	3 cut(s)	566, 670, 853
Hpy188I	TCNGA	3 cut(s)	66, 680, 994
Hpy188III	TCNNGA	6 cut(s)	41, 205, 275, 286, 419, 804
Hpy8I	GTNNAC	3 cut(s)	566, 670, 853
HpyAV	CCTTC	5 cut(s)	46, 182, 589, 892, 1036
HpyCH4III	ACNGT	4 cut(s)	271, 826, 850, 980
HpyCH4V	TGCA	5 cut(s)	125, 471, 516, 621, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	618
HpyF3I	CTNAG	3 cut(s)	12, 234, 284
Hsp92II	CATG	8 cut(s)	173, 316, 427, 545, 595, 676, 862, 1042
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	3 cut(s)	37, 415, 862
LmnI	GCTCC	1 cut(s)	994
Lsp1109I	GCAGC	1 cut(s)	621
LweI	GCATC	4 cut(s)	268, 630, 807, 927
MaeI	CTAG	2 cut(s)	221, 1095
MaeIII	GTNAC	3 cut(s)	265, 586, 883
MalI	GATC	3 cut(s)	39, 417, 864
MboI	GATC	3 cut(s)	37, 415, 862
MboII	GAAGA	7 cut(s)	382, 385, 425, 673, 851, 854, 1067
MfeI	CAATTG	3 cut(s)	69, 86, 726
MflI	RGATCY	2 cut(s)	415, 862
MlsI	TGGCCA	1 cut(s)	777
MluCI	AATT	8 cut(s)	69, 86, 129, 318, 552, 726, 1063, 1086
MluNI	TGGCCA	1 cut(s)	777
MmeI	TCCRAC	1 cut(s)	658
MnlI	CCTC	3 cut(s)	403, 459, 867
Mox20I	TGGCCA	1 cut(s)	777
Mph1103I	ATGCAT	1 cut(s)	623
MscI	TGGCCA	1 cut(s)	777
MseI	TTAA	4 cut(s)	459, 576, 869, 1089
MslI	CAYNNNNRTG	1 cut(s)	626
Msp20I	TGGCCA	1 cut(s)	777
MspA1I	CMGCKG	1 cut(s)	612
MspR9I	CCNGG	2 cut(s)	301, 970
MunI	CAATTG	3 cut(s)	69, 86, 726
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	2 cut(s)	301, 970
MwoI	GCNNNNNNNGC	1 cut(s)	618
NdeII	GATC	3 cut(s)	37, 415, 862
NlaIII	CATG	8 cut(s)	173, 316, 427, 545, 595, 676, 862, 1042
NlaIV	GGNNCC	3 cut(s)	25, 706, 864
NmuCI	GTSAC	1 cut(s)	265
NsiI	ATGCAT	1 cut(s)	623
NspI	RCATGY	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	1 cut(s)	769
PctI	GAATGC	1 cut(s)	86
PflFI	GACNNNGTC	3 cut(s)	674, 848, 905
PkrI	GCNGC	1 cut(s)	611
PshAI	GACNNNNGTC	1 cut(s)	544
PshBI	ATTAAT	1 cut(s)	576
PsiI	TTATAA	1 cut(s)	1028
Psp6I	CCWGG	2 cut(s)	299, 968
PspGI	CCWGG	2 cut(s)	299, 968
PspN4I	GGNNCC	3 cut(s)	25, 706, 864
PspPI	GGNCC	2 cut(s)	23, 477
PsuI	RGATCY	2 cut(s)	415, 862
PsyI	GACNNNGTC	3 cut(s)	674, 848, 905
PvuII	CAGCTG	1 cut(s)	612
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	626
SaqAI	TTAA	4 cut(s)	459, 576, 869, 1089
SatI	GCNGC	1 cut(s)	610
Sau3AI	GATC	3 cut(s)	37, 415, 862
Sau96I	GGNCC	2 cut(s)	23, 477
ScrFI	CCNGG	2 cut(s)	301, 970
SfaNI	GCATC	4 cut(s)	268, 630, 807, 927
SinI	GGWCC	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	626
SmlI	CTYRAG	1 cut(s)	936
SmoI	CTYRAG	1 cut(s)	936
SpeI	ACTAGT	1 cut(s)	1094
Sse9I	AATT	8 cut(s)	69, 86, 129, 318, 552, 726, 1063, 1086
SsiI	CCGC	1 cut(s)	983
SspMI	CTAG	2 cut(s)	221, 1095
StyD4I	CCNGG	2 cut(s)	299, 968
TaaI	ACNGT	4 cut(s)	271, 826, 850, 980
TaqI	TCGA	4 cut(s)	105, 206, 659, 909
TaqII	GACCGA	1 cut(s)	1019
TasI	AATT	8 cut(s)	69, 86, 129, 318, 552, 726, 1063, 1086
Tru1I	TTAA	4 cut(s)	459, 576, 869, 1089
Tru9I	TTAA	4 cut(s)	459, 576, 869, 1089
TscAI	CASTG	1 cut(s)	853
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	1 cut(s)	609
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	9 cut(s)	158, 243, 273, 329, 540, 608, 847, 1055, 1076
TspRI	CASTG	1 cut(s)	853
Tth111I	GACNNNGTC	3 cut(s)	674, 848, 905
VpaK11BI	GGWCC	1 cut(s)	23
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	3 cut(s)	318, 552, 1063
XceI	RCATGY	1 cut(s)	545
XcmI	CCANNNNNNNNNTGG	2 cut(s)	92, 167
XmiI	GTMKAC	1 cut(s)	852
XspI	CTAG	2 cut(s)	221, 1095
Zsp2I	ATGCAT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.