Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002303

Physical Location & Seq

Genomic Coordinates Reverse (-)

52646222 .. 52650328

Gene Structure 4107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39631

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

ATGGCATCCGATCTTAATACTGAATTAGCCAAGAAGACATTTGTTTTTGGCTTAAAAGTTTGGGTATTAACAGGGATCCTTGTGGGAGTTTTTATTGTGACGATTCTACTGGTGCTATCAATTTGTCTTACTTCACGAAAGAAATCCAGAAAGTCAAATGGCATGCTTCCTCTTAACCAAATTCCAAATGTTTCAAGGGAAATTAAAGAGATTAGGGTTGATCAAGCTTCAGCAAATAACCATATGCCCCGTGGTTCTCTCCTGACTCTTAATGAGAAATTCAGTGACAGAGAATCAGAGAAAGTTTTGATTCATAAAAATGGAGATAGTAGCAGTCGATCAGGCTCATTTAATAATGCAGAGAAGGAAAATGTTGGCTCTCAATCTGGAGACGAGGGTGGTGCAGGGTCAGCTTATACACAGAAGCCATCTTCACATCCTATAACTGCCCCTTCACCTCTTAGTGGTCTACCGGAATTCTCTCACCTTGGTTGGGGTCACTGGTTTACATTACGGGATCTTGAATTTGCAACAAGCCGGTTTTCAAAGGAAAATGTCATTGGTGAGGGTGGATATGGAGTTGTTTATCGCGGTAATCTGATTAATGGAACTCCTGTGGCTGTGAAGAAGCTACTCAACAACCTAGGACAAGCAGAGAAGGAATTTAGAGTGGAAGTCGAGGCTATTGGGCATGTACGACACAAAAACTTGGTTCGTCTTCTAGGATACTGCATCGAAGGCACCCATAGGATGCTGGTTTATGAGTATGTCAACAATGGAAATCTGGAGCAATGGCTTCATGGAGCTATGCGACATCATGGATATCTAACATGGGAGGCGCGCATGAAAGTGCTCCTTGGCACTGCTAAAGCGCTGGCTTATTTGCATGAGGCCATCGAGCCAAAAGTAGTGCATCGAGATATCAAGTCGAGTAATATCTTGCTTGATGATGACTTCAATGCTAAAATATCTGACTTTGGTCTGGCAAAGATGCTAATGGCTGGAAAGAGCCATATTACGACTAGAGTTATGGGAACCTTTGGATATGTAGCACCCGAATATGCCAATTCTGGCCTTTTAAACGAGAAGAGTGATGTTTATAGCTTTGGCGTTGTGATTTTGGAAGCAATTACTGGAAGAGACCCAGTGGACTATGGTCGGCAAGCACAAGAGGTAAATTTGGTAGACTGGCTCAAGATGATGGTCGGAAGTCGGCGTTCAGAGGAGGTGGTGGATCCAAACATTGAGACCAGACCATCGACAAGTGCCCTTAAACGAGCCCTCTTGACTGCGTTGAGGTGTGTAGATCCTGATTCTGATAAAAGACCAAAGATGGGTCAAGTTGTTCGCATGCTTGAATCTGAGGAATATCCTGTACTTCGAGAGGATCGAAGACGCCGAAAAAGTCAAGCAGGCAATGTGGAGGGCGAGTCTCAGAAAGACAATTCTGATACAGATAGGAGTGACAATCCAGATACAAGGACCAACAACAGAAGGAACAATCGAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

503

Amino Acids

56.14

Weight (kDa)

9.05

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	182 - 449	2.2e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	184 - 452	1.2e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09440 AT1G09440 AT1G56720 AT1G56720 AT1G56720 AT1G56720
fragaria_vesca	FvH4_4g21450 FvH4_4g21450 FvH4_6g08381
malus_domestica	MD04G1187400.v1.1 MD12G1201000.v1.1 MD13G1141100.v1.1 MD16G1137200.v1.1
prunus_persica	Prupe.1G106300_v2.0.a1 Prupe.1G106300_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1
pyrus_communis	pycom04g16550 pycom12g18730 pycom13g12260 pycom16g12090 pycom16g12100
rosa_chinensis	RchiOBHm_Chr3g0458331 RchiOBHm_Chr4g0427381
rosa_laevigata	RLG00000007248 RLG00000025168
rosa_multiflora	Rmu_sc0003813.1_g000020 Rmu_sc0007338.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369050 Rroxscaffold_6G00421160
rosa_rugosa	Rorug03G0025800 Rorug03G0025800 Rorug04G0217200 Rorug04G0217300 Rorug04G0217400 Rorug04G0217500
rosa_samantha	Rh3BG089600 Rh4AG273600 Rh4DG276600
rosa_wichuraiana	Rw3G007360 Rw4G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	740
AccI	GTMKAC	2 cut(s)	469, 1185
AccII	CGCG	2 cut(s)	591, 841
AciI	CCGC	1 cut(s)	591
AclWI	GGATC	7 cut(s)	70, 83, 525, 1229, 1242, 1301, 1395
AcsI	RAATTY	6 cut(s)	180, 278, 476, 524, 662, 1177
AcuI	CTGAAG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	1396
AfaI	GTAC	2 cut(s)	696, 1377
AfeI	AGCGCT	1 cut(s)	873
AfiI	CCNNNNNNNGG	3 cut(s)	464, 493, 1334
AgsI	TTSAA	5 cut(s)	195, 524, 546, 958, 1358
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	5 cut(s)	227, 413, 631, 806, 1104
AluI	AGCT	5 cut(s)	227, 413, 631, 806, 1104
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	4 cut(s)	384, 1134, 1241, 1437
AlwI	GGATC	7 cut(s)	70, 83, 525, 1229, 1242, 1301, 1395
Aor51HI	AGCGCT	1 cut(s)	873
AoxI	GGCC	2 cut(s)	891, 1072
ApoI	RAATTY	6 cut(s)	180, 278, 476, 524, 662, 1177
AseI	ATTAAT	1 cut(s)	603
AspA2I	CCTAGG	1 cut(s)	643
AspLEI	GCGC	3 cut(s)	841, 843, 874
AspS9I	GGNCC	1 cut(s)	1482
AsuHPI	GGTGA	3 cut(s)	447, 476, 575
AvaII	GGWCC	1 cut(s)	1482
AvrII	CCTAGG	1 cut(s)	643
BaeGI	GKGCMC	1 cut(s)	1270
BamHI	GGATCC	2 cut(s)	75, 1234
BanI	GGYRCC	1 cut(s)	740
BanII	GRGCYC	1 cut(s)	1282
BbsI	GAAGAC	3 cut(s)	41, 710, 1399
Bbv12I	GWGCWC	1 cut(s)	855
BccI	CCATC	5 cut(s)	436, 902, 1195, 1264, 1327
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciVI	GTATCC	1 cut(s)	719
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	4 cut(s)	384, 1134, 1241, 1437
BfaI	CTAG	3 cut(s)	644, 722, 1023
BfoI	RGCGCY	1 cut(s)	875
BfuI	GTATCC	1 cut(s)	719
BlnI	CCTAGG	1 cut(s)	643
Bme18I	GGWCC	1 cut(s)	1482
BmgT120I	GGNCC	1 cut(s)	1482
BmiI	GGNNCC	4 cut(s)	77, 742, 1036, 1236
BmrI	ACTGGG	1 cut(s)	1139
BmsI	GCATC	5 cut(s)	14, 741, 741, 922, 981
BmuI	ACTGGG	1 cut(s)	1139
BoxI	GACNNNNGTC	2 cut(s)	978, 1155
BpiI	GAAGAC	3 cut(s)	41, 710, 1399
BpmI	CTGGAG	2 cut(s)	408, 806
BpuEI	CTTGAG	1 cut(s)	1178
BsaHI	GRCGYC	1 cut(s)	1396
BsaI	GGTCTC	2 cut(s)	1134, 1241
BsaJI	CCNNGG	4 cut(s)	250, 487, 643, 856
BsaWI	WCCGGW	1 cut(s)	472
BsaXI	ACNNNNNCTCC	2 cut(s)	1415, 1445
Bsc4I	CCNNNNNNNGG	3 cut(s)	464, 493, 1334
Bse118I	RCCGGY	1 cut(s)	537
Bse1I	ACTGG	5 cut(s)	114, 506, 1138, 1145, 1193
Bse3DI	GCAATG	2 cut(s)	797, 1423
BseDI	CCNNGG	4 cut(s)	250, 487, 643, 856
BseGI	GGATG	3 cut(s)	5, 436, 756
BseLI	CCNNNNNNNGG	3 cut(s)	464, 493, 1334
BseMI	GCAATG	2 cut(s)	797, 1423
BseMII	CTCAG	2 cut(s)	1353, 1448
BseNI	ACTGG	5 cut(s)	114, 506, 1138, 1145, 1193
BsePI	GCGCGC	1 cut(s)	839
BseRI	GAGGAG	1 cut(s)	1238
BseSI	GKGCMC	1 cut(s)	1270
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	2 cut(s)	591, 841
BshFI	GGCC	2 cut(s)	893, 1074
BshNI	GGYRCC	1 cut(s)	740
BsiHKAI	GWGCWC	1 cut(s)	855
BsiSI	CCGG	2 cut(s)	473, 538
BslI	CCNNNNNNNGG	3 cut(s)	464, 493, 1334
BsmAI	GTCTC	4 cut(s)	384, 1134, 1241, 1437
BsmBI	CGTCTC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	893, 1074
Bso31I	GGTCTC	2 cut(s)	1134, 1241
Bsp1286I	GDGCHC	3 cut(s)	855, 1270, 1282
Bsp143I	GATC	8 cut(s)	10, 75, 220, 338, 517, 1234, 1306, 1387
BspACI	CCGC	1 cut(s)	591
BspANI	GGCC	2 cut(s)	893, 1074
BspCNI	CTCAG	2 cut(s)	1354, 1447
BspFNI	CGCG	2 cut(s)	591, 841
BspLI	GGNNCC	4 cut(s)	77, 742, 1036, 1236
BspPI	GGATC	7 cut(s)	70, 83, 525, 1229, 1242, 1301, 1395
BspT107I	GGYRCC	1 cut(s)	740
BspTNI	GGTCTC	2 cut(s)	1134, 1241
BsrDI	GCAATG	2 cut(s)	797, 1423
BsrFI	RCCGGY	1 cut(s)	537
BsrI	ACTGG	5 cut(s)	114, 506, 1138, 1145, 1193
BssAI	RCCGGY	1 cut(s)	537
BssECI	CCNNGG	4 cut(s)	250, 487, 643, 856
BssHII	GCGCGC	1 cut(s)	839
BssMI	GATC	8 cut(s)	10, 75, 220, 338, 517, 1234, 1306, 1387
BssNI	GRCGYC	1 cut(s)	1396
BssT1I	CCWWGG	3 cut(s)	487, 643, 856
Bst6I	CTCTTC	2 cut(s)	1082, 1132
BstACI	GRCGYC	1 cut(s)	1396
BstC8I	GCNNGC	6 cut(s)	164, 841, 876, 1164, 1352, 1414
BstDEI	CTNAG	3 cut(s)	461, 1362, 1434
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	3 cut(s)	5, 436, 756
BstFNI	CGCG	2 cut(s)	591, 841
BstH2I	RGCGCY	1 cut(s)	875
BstHHI	GCGC	3 cut(s)	841, 843, 874
BstKTI	GATC	8 cut(s)	13, 78, 223, 341, 520, 1237, 1309, 1390
BstMAI	GTCTC	4 cut(s)	384, 1134, 1241, 1437
BstMBI	GATC	8 cut(s)	10, 75, 220, 338, 517, 1234, 1306, 1387
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 738
BstNSI	RCATGY	3 cut(s)	166, 695, 1354
BstPAI	GACNNNNGTC	2 cut(s)	978, 1155
BstSLI	GKGCMC	1 cut(s)	1270
BstUI	CGCG	2 cut(s)	591, 841
BstV2I	GAAGAC	3 cut(s)	41, 710, 1399
BstX2I	RGATCY	4 cut(s)	75, 517, 1234, 1306
BstYI	RGATCY	4 cut(s)	75, 517, 1234, 1306
BsuI	GTATCC	1 cut(s)	719
BsuRI	GGCC	2 cut(s)	893, 1074
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	5, 436, 756
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	4 cut(s)	289, 499, 861, 1152
Cac8I	GCNNGC	6 cut(s)	164, 841, 876, 1164, 1352, 1414
CfoI	GCGC	3 cut(s)	841, 843, 874
Cfr10I	RCCGGY	1 cut(s)	537
Cfr13I	GGNCC	1 cut(s)	1482
CseI	GACGC	1 cut(s)	1404
Csp6I	GTAC	2 cut(s)	695, 1376
CviAII	CATG	8 cut(s)	163, 692, 800, 818, 831, 844, 887, 1351
CviQI	GTAC	2 cut(s)	695, 1376
DdeI	CTNAG	3 cut(s)	461, 1362, 1434
DpnI	GATC	8 cut(s)	12, 77, 222, 340, 519, 1236, 1308, 1389
DpnII	GATC	8 cut(s)	10, 75, 220, 338, 517, 1234, 1306, 1387
DraI	TTTAAA	1 cut(s)	1080
Eam1104I	CTCTTC	2 cut(s)	1082, 1132
EarI	CTCTTC	2 cut(s)	1082, 1132
Eco130I	CCWWGG	3 cut(s)	487, 643, 856
Eco24I	GRGCYC	1 cut(s)	1282
Eco31I	GGTCTC	2 cut(s)	1134, 1241
Eco32I	GATATC	2 cut(s)	824, 922
Eco47I	GGWCC	1 cut(s)	1482
Eco47III	AGCGCT	1 cut(s)	873
Eco57I	CTGAAG	1 cut(s)	213
EcoRI	GAATTC	1 cut(s)	476
EcoRV	GATATC	2 cut(s)	824, 922
EcoT14I	CCWWGG	3 cut(s)	487, 643, 856
EcoT38I	GRGCYC	1 cut(s)	1282
ErhI	CCWWGG	3 cut(s)	487, 643, 856
Esp3I	CGTCTC	1 cut(s)	384
FaeI	CATG	8 cut(s)	166, 695, 803, 821, 834, 847, 890, 1354
FalI	AAGNNNNNCTT	2 cut(s)	840, 872
FatI	CATG	8 cut(s)	162, 691, 799, 817, 830, 843, 886, 1350
FauNDI	CATATG	1 cut(s)	243
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	2 cut(s)	469, 1185
FokI	GGATG	2 cut(s)	423, 763
FriOI	GRGCYC	1 cut(s)	1282
FspBI	CTAG	3 cut(s)	644, 722, 1023
GlaI	GCGC	3 cut(s)	840, 842, 873
GsuI	CTGGAG	2 cut(s)	408, 806
HaeII	RGCGCY	1 cut(s)	875
HaeIII	GGCC	2 cut(s)	893, 1074
HapII	CCGG	2 cut(s)	473, 538
HgaI	GACGC	1 cut(s)	1404
HhaI	GCGC	3 cut(s)	841, 843, 874
Hin1I	GRCGYC	1 cut(s)	1396
Hin1II	CATG	8 cut(s)	166, 695, 803, 821, 834, 847, 890, 1354
Hin6I	GCGC	3 cut(s)	839, 841, 872
HinP1I	GCGC	3 cut(s)	839, 841, 872
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	7 cut(s)	103, 265, 293, 310, 1313, 1358, 1430
HpaII	CCGG	2 cut(s)	473, 538
HphI	GGTGA	3 cut(s)	447, 476, 575
Hpy166II	GTNNAC	5 cut(s)	470, 507, 772, 1150, 1186
Hpy8I	GTNNAC	5 cut(s)	470, 507, 772, 1150, 1186
HpyAV	CCTTC	5 cut(s)	358, 462, 652, 731, 1488
HpyCH4V	TGCA	6 cut(s)	359, 404, 530, 732, 886, 913
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 738
HpyF3I	CTNAG	3 cut(s)	461, 1362, 1434
Hsp92I	GRCGYC	1 cut(s)	1396
Hsp92II	CATG	8 cut(s)	166, 695, 803, 821, 834, 847, 890, 1354
HspAI	GCGC	3 cut(s)	839, 841, 872
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	8 cut(s)	10, 75, 220, 338, 517, 1234, 1306, 1387
LmnI	GCTCC	3 cut(s)	787, 803, 858
LweI	GCATC	5 cut(s)	14, 741, 741, 922, 981
MaeI	CTAG	3 cut(s)	644, 722, 1023
MaeIII	GTNAC	4 cut(s)	97, 284, 497, 1463
MalI	GATC	8 cut(s)	12, 77, 222, 340, 519, 1236, 1308, 1389
MboI	GATC	8 cut(s)	10, 75, 220, 338, 517, 1234, 1306, 1387
MboII	GAAGA	7 cut(s)	46, 423, 637, 710, 1099, 1149, 1404
MflI	RGATCY	4 cut(s)	75, 517, 1234, 1306
MhlI	GDGCHC	3 cut(s)	855, 1270, 1282
MlyI	GAGTC	2 cut(s)	259, 1439
MmeI	TCCRAC	1 cut(s)	1186
MslI	CAYNNNNRTG	2 cut(s)	318, 848
MspI	CCGG	2 cut(s)	473, 538
MvnI	CGCG	2 cut(s)	591, 841
MwoI	GCNNNNNNNGC	2 cut(s)	410, 738
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	8 cut(s)	10, 75, 220, 338, 517, 1234, 1306, 1387
NlaIII	CATG	8 cut(s)	166, 695, 803, 821, 834, 847, 890, 1354
NlaIV	GGNNCC	4 cut(s)	77, 742, 1036, 1236
NmuCI	GTSAC	4 cut(s)	97, 284, 497, 1463
NspI	RCATGY	3 cut(s)	166, 695, 1354
PaeI	GCATGC	2 cut(s)	166, 1354
PauI	GCGCGC	1 cut(s)	839
PcsI	WCGNNNNNNNCGW	2 cut(s)	1387, 1396
PfeI	GAWTC	5 cut(s)	103, 293, 310, 1313, 1358
PleI	GAGTC	2 cut(s)	259, 1438
PpsI	GAGTC	2 cut(s)	259, 1438
PshAI	GACNNNNGTC	2 cut(s)	978, 1155
PshBI	ATTAAT	1 cut(s)	603
PspN4I	GGNNCC	4 cut(s)	77, 742, 1036, 1236
PspPI	GGNCC	1 cut(s)	1482
PsuI	RGATCY	4 cut(s)	75, 517, 1234, 1306
PteI	GCGCGC	1 cut(s)	839
RsaI	GTAC	2 cut(s)	696, 1377
RsaNI	GTAC	2 cut(s)	695, 1376
RseI	CAYNNNNRTG	2 cut(s)	318, 848
Sau3AI	GATC	8 cut(s)	10, 75, 220, 338, 517, 1234, 1306, 1387
Sau96I	GGNCC	1 cut(s)	1482
SchI	GAGTC	2 cut(s)	259, 1439
SduI	GDGCHC	3 cut(s)	855, 1270, 1282
SfaNI	GCATC	5 cut(s)	14, 741, 741, 922, 981
SinI	GGWCC	1 cut(s)	1482
SmiMI	CAYNNNNRTG	2 cut(s)	318, 848
SmlI	CTYRAG	1 cut(s)	1193
SmoI	CTYRAG	1 cut(s)	1193
SphI	GCATGC	2 cut(s)	166, 1354
SsiI	CCGC	1 cut(s)	591
SspMI	CTAG	3 cut(s)	644, 722, 1023
StyI	CCWWGG	3 cut(s)	487, 643, 856
TatI	WGTACW	1 cut(s)	1375
TfiI	GAWTC	5 cut(s)	103, 293, 310, 1313, 1358
TscAI	CASTG	4 cut(s)	289, 506, 868, 1152
TseFI	GTSAC	4 cut(s)	97, 284, 497, 1463
Tsp45I	GTSAC	4 cut(s)	97, 284, 497, 1463
TspDTI	ATGAA	3 cut(s)	302, 788, 860
TspRI	CASTG	4 cut(s)	289, 506, 868, 1152
VpaK11BI	GGWCC	1 cut(s)	1482
VspI	ATTAAT	1 cut(s)	603
XapI	RAATTY	6 cut(s)	180, 278, 476, 524, 662, 1177
XceI	RCATGY	3 cut(s)	166, 695, 1354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XmaJI	CCTAGG	1 cut(s)	643
XmiI	GTMKAC	2 cut(s)	469, 1185
XspI	CTAG	3 cut(s)	644, 722, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.