Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003813.1

Orthogroup ID

OG0002303

Physical Location & Seq

Genomic Coordinates Reverse (-)

110532 .. 113323

Gene Structure 2792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003813.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ctgagggatctttttatcagtgaagaaatggcatccgatcttaatactgaattagccaagaagacatttgtttttggcttaaaagtttgggtattaacagggatccttgtgggagtttttattgtgacgattctactggtgctatcaatttgtcttacttcgcgaaagaaatccagaaagtcaaatgacatgcttcctcttaaccaaattccaaatgtttcaagggaaattaaagagattagggttgatcaagcttcagcgaataaccgtataccccgtggttctctcctgacccttaatgagaaattcagtgacagagaatcagagaaagttttgattcataaaaatggagatagtagcagtcgatcaggctcatttaataatgcagagaaggaaaatgttggctctcaatctggagacgagggtggtgcagggtcagcttatacacagaagccatcttcacatcctataactgccccttcacctctttgtggtctaccggaattctctcaccttggttggggtcactggtttacattacgggatcttgaatttgcaacaaaccggttttcaaaggaaaatgtcattggtgagggtggatatggagttgtttatcgcggtaatctgattaatggaactcctgtggctgtgaagaagctactcaacaacctaggacaagcagagaaggaatttagagtggaagttgaggctattgggcatgtacgacacaaaaacttggttcgtcttctaggatactgcatcgaaggcacccataggatgctggtttatgagtatgtcaacaatggaaatctggagcaatggcttcatggagctatgcgacatcatggatatctaacatgggaggcgcgcatgaaagtgctccttggcactgctaaagcgctggcttatttgcatgaggctatcgagccaaaagtagtgcatcgagatatcaagtcgagtaatatcttgcttgatgatgacttcaatgctaaaatatctgactttggtctggcaaagatgctaatggctggaaagagccatattacgactagagttatgggaacctttggatatgtagcacccgaatatgccaattctggccttttaaacgagaagagtgatgtttatagctttggcgttgtgattttggaagcaattactggaagagacccagtggactatggtcggcaagcacaagaggtaaatttggtagactggctcaagatgatggttggaagtcggcgttcagaggaggtggtggatccaaacattgagaccagaccatcgacaagcgcccttaaacgagccctcttgactgcgttgaggtgtgtagatcctgattctgataaaagaccaaagatgggtcaagttgttcgcatgcttgaatctgaggaatatcctgtacttcgagaggatcgaagacgccgaaaaagtcaagcaggcaatgtggagggcgagtctcagaaagacaattctgatacagataggagtgacaatccagatacaaggaccaacaacagaaggaacaatcgaacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

512

Amino Acids

57.34

Weight (kDa)

8.79

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09440 AT1G09440 AT1G56720 AT1G56720 AT1G56720 AT1G56720
fragaria_vesca	FvH4_4g21450 FvH4_4g21450 FvH4_6g08381
malus_domestica	MD04G1187400.v1.1 MD12G1201000.v1.1 MD13G1141100.v1.1 MD16G1137200.v1.1
prunus_persica	Prupe.1G106300_v2.0.a1 Prupe.1G106300_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1
pyrus_communis	pycom04g16550 pycom12g18730 pycom13g12260 pycom16g12090 pycom16g12100
rosa_chinensis	RchiOBHm_Chr3g0458331 RchiOBHm_Chr4g0427381
rosa_laevigata	RLG00000007248 RLG00000025168
rosa_multiflora	Rmu_sc0003813.1_g000020 Rmu_sc0007338.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369050 Rroxscaffold_6G00421160
rosa_rugosa	Rorug03G0025800 Rorug03G0025800 Rorug04G0217200 Rorug04G0217300 Rorug04G0217400 Rorug04G0217500
rosa_samantha	Rh3BG089600 Rh4AG273600 Rh4DG276600
rosa_wichuraiana	Rw3G007360 Rw4G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	767
AccI	GTMKAC	3 cut(s)	271, 496, 1212
AccII	CGCG	3 cut(s)	163, 618, 868
AciI	CCGC	1 cut(s)	618
AclWI	GGATC	8 cut(s)	15, 97, 110, 552, 1256, 1269, 1328, 1422
AcsI	RAATTY	6 cut(s)	207, 305, 503, 551, 689, 1204
AcuI	CTGAAG	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	1423
AfaI	GTAC	2 cut(s)	723, 1404
AfeI	AGCGCT	1 cut(s)	900
AfiI	CCNNNNNNNGG	3 cut(s)	491, 520, 1361
AgeI	ACCGGT	1 cut(s)	564
AgsI	TTSAA	5 cut(s)	222, 551, 573, 985, 1385
AjuI	GAANNNNNNNTTGG	2 cut(s)	570, 602
AluBI	AGCT	5 cut(s)	254, 440, 658, 833, 1131
AluI	AGCT	5 cut(s)	254, 440, 658, 833, 1131
Alw21I	GWGCWC	1 cut(s)	882
Alw26I	GTCTC	4 cut(s)	411, 1161, 1268, 1464
AlwI	GGATC	8 cut(s)	15, 97, 110, 552, 1256, 1269, 1328, 1422
Aor51HI	AGCGCT	1 cut(s)	900
AoxI	GGCC	1 cut(s)	1099
ApoI	RAATTY	6 cut(s)	207, 305, 503, 551, 689, 1204
AseI	ATTAAT	1 cut(s)	630
AsiGI	ACCGGT	1 cut(s)	564
AspA2I	CCTAGG	1 cut(s)	670
AspLEI	GCGC	4 cut(s)	868, 870, 901, 1295
AspS9I	GGNCC	1 cut(s)	1509
AsuHPI	GGTGA	3 cut(s)	474, 503, 602
AvaII	GGWCC	1 cut(s)	1509
AvrII	CCTAGG	1 cut(s)	670
BamHI	GGATCC	2 cut(s)	102, 1261
BanI	GGYRCC	1 cut(s)	767
BanII	GRGCYC	1 cut(s)	1309
BbsI	GAAGAC	3 cut(s)	68, 737, 1426
Bbv12I	GWGCWC	1 cut(s)	882
BccI	CCATC	4 cut(s)	463, 1222, 1291, 1354
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BciVI	GTATCC	1 cut(s)	746
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	4 cut(s)	411, 1161, 1268, 1464
BfaI	CTAG	3 cut(s)	671, 749, 1050
BfoI	RGCGCY	2 cut(s)	902, 1296
BfuI	GTATCC	1 cut(s)	746
BlnI	CCTAGG	1 cut(s)	670
Bme18I	GGWCC	1 cut(s)	1509
BmgT120I	GGNCC	1 cut(s)	1509
BmiI	GGNNCC	4 cut(s)	104, 769, 1063, 1263
BmrI	ACTGGG	1 cut(s)	1166
BmsI	GCATC	5 cut(s)	41, 768, 768, 949, 1008
BmuI	ACTGGG	1 cut(s)	1166
BoxI	GACNNNNGTC	2 cut(s)	1005, 1182
BpiI	GAAGAC	3 cut(s)	68, 737, 1426
BpmI	CTGGAG	2 cut(s)	435, 833
BpuEI	CTTGAG	1 cut(s)	1205
BsaHI	GRCGYC	1 cut(s)	1423
BsaI	GGTCTC	2 cut(s)	1161, 1268
BsaJI	CCNNGG	4 cut(s)	277, 514, 670, 883
BsaWI	WCCGGW	2 cut(s)	499, 564
BsaXI	ACNNNNNCTCC	2 cut(s)	1442, 1472
Bsc4I	CCNNNNNNNGG	3 cut(s)	491, 520, 1361
Bse118I	RCCGGY	1 cut(s)	564
Bse1I	ACTGG	5 cut(s)	141, 533, 1165, 1172, 1220
Bse3DI	GCAATG	2 cut(s)	824, 1450
BseDI	CCNNGG	4 cut(s)	277, 514, 670, 883
BseGI	GGATG	3 cut(s)	32, 463, 783
BseLI	CCNNNNNNNGG	3 cut(s)	491, 520, 1361
BseMI	GCAATG	2 cut(s)	824, 1450
BseMII	CTCAG	2 cut(s)	1380, 1475
BseNI	ACTGG	5 cut(s)	141, 533, 1165, 1172, 1220
BsePI	GCGCGC	1 cut(s)	866
BseRI	GAGGAG	1 cut(s)	1265
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	3 cut(s)	163, 618, 868
BshFI	GGCC	1 cut(s)	1101
BshNI	GGYRCC	1 cut(s)	767
BshTI	ACCGGT	1 cut(s)	564
BsiHKAI	GWGCWC	1 cut(s)	882
BsiSI	CCGG	2 cut(s)	500, 565
BslI	CCNNNNNNNGG	3 cut(s)	491, 520, 1361
BsmAI	GTCTC	4 cut(s)	411, 1161, 1268, 1464
BsmBI	CGTCTC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	1101
Bso31I	GGTCTC	2 cut(s)	1161, 1268
Bsp1286I	GDGCHC	2 cut(s)	882, 1309
Bsp143I	GATC	9 cut(s)	7, 37, 102, 247, 365, 544, 1261, 1333, 1414
Bsp68I	TCGCGA	1 cut(s)	163
BspACI	CCGC	1 cut(s)	618
BspANI	GGCC	1 cut(s)	1101
BspCNI	CTCAG	2 cut(s)	1381, 1474
BspFNI	CGCG	3 cut(s)	163, 618, 868
BspLI	GGNNCC	4 cut(s)	104, 769, 1063, 1263
BspPI	GGATC	8 cut(s)	15, 97, 110, 552, 1256, 1269, 1328, 1422
BspT107I	GGYRCC	1 cut(s)	767
BspTNI	GGTCTC	2 cut(s)	1161, 1268
BsrDI	GCAATG	2 cut(s)	824, 1450
BsrFI	RCCGGY	1 cut(s)	564
BsrI	ACTGG	5 cut(s)	141, 533, 1165, 1172, 1220
BssAI	RCCGGY	1 cut(s)	564
BssECI	CCNNGG	4 cut(s)	277, 514, 670, 883
BssHII	GCGCGC	1 cut(s)	866
BssMI	GATC	9 cut(s)	7, 37, 102, 247, 365, 544, 1261, 1333, 1414
BssNAI	GTATAC	1 cut(s)	272
BssNI	GRCGYC	1 cut(s)	1423
BssT1I	CCWWGG	3 cut(s)	514, 670, 883
Bst1107I	GTATAC	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	2 cut(s)	1109, 1159
BstACI	GRCGYC	1 cut(s)	1423
BstC8I	GCNNGC	5 cut(s)	868, 903, 1191, 1379, 1441
BstDEI	CTNAG	3 cut(s)	2, 1389, 1461
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	3 cut(s)	32, 463, 783
BstFNI	CGCG	3 cut(s)	163, 618, 868
BstH2I	RGCGCY	2 cut(s)	902, 1296
BstHHI	GCGC	4 cut(s)	868, 870, 901, 1295
BstKTI	GATC	9 cut(s)	10, 40, 105, 250, 368, 547, 1264, 1336, 1417
BstMAI	GTCTC	4 cut(s)	411, 1161, 1268, 1464
BstMBI	GATC	9 cut(s)	7, 37, 102, 247, 365, 544, 1261, 1333, 1414
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 765
BstNSI	RCATGY	3 cut(s)	193, 722, 1381
BstPAI	GACNNNNGTC	2 cut(s)	1005, 1182
BstUI	CGCG	3 cut(s)	163, 618, 868
BstV2I	GAAGAC	3 cut(s)	68, 737, 1426
BstX2I	RGATCY	5 cut(s)	7, 102, 544, 1261, 1333
BstYI	RGATCY	5 cut(s)	7, 102, 544, 1261, 1333
BstZ17I	GTATAC	1 cut(s)	272
BsuI	GTATCC	1 cut(s)	746
BsuRI	GGCC	1 cut(s)	1101
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	3 cut(s)	32, 463, 783
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	5 cut(s)	25, 316, 526, 888, 1179
BtuMI	TCGCGA	1 cut(s)	163
Cac8I	GCNNGC	5 cut(s)	868, 903, 1191, 1379, 1441
CfoI	GCGC	4 cut(s)	868, 870, 901, 1295
Cfr10I	RCCGGY	1 cut(s)	564
Cfr13I	GGNCC	1 cut(s)	1509
CseI	GACGC	1 cut(s)	1431
Csp6I	GTAC	2 cut(s)	722, 1403
CspAI	ACCGGT	1 cut(s)	564
CviAII	CATG	8 cut(s)	190, 719, 827, 845, 858, 871, 914, 1378
CviQI	GTAC	2 cut(s)	722, 1403
DdeI	CTNAG	3 cut(s)	2, 1389, 1461
DpnI	GATC	9 cut(s)	9, 39, 104, 249, 367, 546, 1263, 1335, 1416
DpnII	GATC	9 cut(s)	7, 37, 102, 247, 365, 544, 1261, 1333, 1414
DraI	TTTAAA	1 cut(s)	1107
Eam1104I	CTCTTC	2 cut(s)	1109, 1159
EarI	CTCTTC	2 cut(s)	1109, 1159
Eco130I	CCWWGG	3 cut(s)	514, 670, 883
Eco24I	GRGCYC	1 cut(s)	1309
Eco31I	GGTCTC	2 cut(s)	1161, 1268
Eco32I	GATATC	2 cut(s)	851, 949
Eco47I	GGWCC	1 cut(s)	1509
Eco47III	AGCGCT	1 cut(s)	900
Eco57I	CTGAAG	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	503
EcoRV	GATATC	2 cut(s)	851, 949
EcoT14I	CCWWGG	3 cut(s)	514, 670, 883
EcoT38I	GRGCYC	1 cut(s)	1309
ErhI	CCWWGG	3 cut(s)	514, 670, 883
Esp3I	CGTCTC	1 cut(s)	411
FaeI	CATG	8 cut(s)	193, 722, 830, 848, 861, 874, 917, 1381
FalI	AAGNNNNNCTT	2 cut(s)	867, 899
FatI	CATG	8 cut(s)	189, 718, 826, 844, 857, 870, 913, 1377
FbaI	TGATCA	1 cut(s)	247
FblI	GTMKAC	3 cut(s)	271, 496, 1212
FokI	GGATG	3 cut(s)	19, 450, 790
FriOI	GRGCYC	1 cut(s)	1309
FspBI	CTAG	3 cut(s)	671, 749, 1050
GlaI	GCGC	4 cut(s)	867, 869, 900, 1294
GsuI	CTGGAG	2 cut(s)	435, 833
HaeII	RGCGCY	2 cut(s)	902, 1296
HaeIII	GGCC	1 cut(s)	1101
HapII	CCGG	2 cut(s)	500, 565
HgaI	GACGC	1 cut(s)	1431
HhaI	GCGC	4 cut(s)	868, 870, 901, 1295
Hin1I	GRCGYC	1 cut(s)	1423
Hin1II	CATG	8 cut(s)	193, 722, 830, 848, 861, 874, 917, 1381
Hin6I	GCGC	4 cut(s)	866, 868, 899, 1293
HinP1I	GCGC	4 cut(s)	866, 868, 899, 1293
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	6 cut(s)	130, 320, 337, 1340, 1385, 1457
HpaII	CCGG	2 cut(s)	500, 565
HphI	GGTGA	3 cut(s)	474, 503, 602
Hpy166II	GTNNAC	6 cut(s)	272, 497, 534, 799, 1177, 1213
Hpy188I	TCNGA	9 cut(s)	37, 325, 627, 1000, 1249, 1345, 1390, 1464, 1477
Hpy8I	GTNNAC	6 cut(s)	272, 497, 534, 799, 1177, 1213
HpyAV	CCTTC	5 cut(s)	385, 489, 679, 758, 1515
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4V	TGCA	6 cut(s)	386, 431, 557, 759, 913, 940
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 765
HpyF3I	CTNAG	3 cut(s)	2, 1389, 1461
Hsp92I	GRCGYC	1 cut(s)	1423
Hsp92II	CATG	8 cut(s)	193, 722, 830, 848, 861, 874, 917, 1381
HspAI	GCGC	4 cut(s)	866, 868, 899, 1293
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	9 cut(s)	7, 37, 102, 247, 365, 544, 1261, 1333, 1414
LmnI	GCTCC	3 cut(s)	814, 830, 885
LweI	GCATC	5 cut(s)	41, 768, 768, 949, 1008
MaeI	CTAG	3 cut(s)	671, 749, 1050
MaeIII	GTNAC	4 cut(s)	124, 311, 524, 1490
MalI	GATC	9 cut(s)	9, 39, 104, 249, 367, 546, 1263, 1335, 1416
MboI	GATC	9 cut(s)	7, 37, 102, 247, 365, 544, 1261, 1333, 1414
MboII	GAAGA	8 cut(s)	35, 73, 450, 664, 737, 1126, 1176, 1431
MflI	RGATCY	5 cut(s)	7, 102, 544, 1261, 1333
MhlI	GDGCHC	2 cut(s)	882, 1309
MlyI	GAGTC	1 cut(s)	1466
MmeI	TCCRAC	1 cut(s)	1213
MslI	CAYNNNNRTG	2 cut(s)	345, 875
MspI	CCGG	2 cut(s)	500, 565
MvnI	CGCG	3 cut(s)	163, 618, 868
MwoI	GCNNNNNNNGC	2 cut(s)	437, 765
NdeII	GATC	9 cut(s)	7, 37, 102, 247, 365, 544, 1261, 1333, 1414
NlaIII	CATG	8 cut(s)	193, 722, 830, 848, 861, 874, 917, 1381
NlaIV	GGNNCC	4 cut(s)	104, 769, 1063, 1263
NmuCI	GTSAC	4 cut(s)	124, 311, 524, 1490
NruI	TCGCGA	1 cut(s)	163
NspI	RCATGY	3 cut(s)	193, 722, 1381
PaeI	GCATGC	1 cut(s)	1381
PauI	GCGCGC	1 cut(s)	866
PcsI	WCGNNNNNNNCGW	2 cut(s)	1414, 1423
PfeI	GAWTC	5 cut(s)	130, 320, 337, 1340, 1385
PinAI	ACCGGT	1 cut(s)	564
PleI	GAGTC	1 cut(s)	1465
PpsI	GAGTC	1 cut(s)	1465
PshAI	GACNNNNGTC	2 cut(s)	1005, 1182
PshBI	ATTAAT	1 cut(s)	630
PspN4I	GGNNCC	4 cut(s)	104, 769, 1063, 1263
PspPI	GGNCC	1 cut(s)	1509
PsuI	RGATCY	5 cut(s)	7, 102, 544, 1261, 1333
PteI	GCGCGC	1 cut(s)	866
RruI	TCGCGA	1 cut(s)	163
RsaI	GTAC	2 cut(s)	723, 1404
RsaNI	GTAC	2 cut(s)	722, 1403
RseI	CAYNNNNRTG	2 cut(s)	345, 875
Sau3AI	GATC	9 cut(s)	7, 37, 102, 247, 365, 544, 1261, 1333, 1414
Sau96I	GGNCC	1 cut(s)	1509
SchI	GAGTC	1 cut(s)	1466
SduI	GDGCHC	2 cut(s)	882, 1309
SfaNI	GCATC	5 cut(s)	41, 768, 768, 949, 1008
SinI	GGWCC	1 cut(s)	1509
SmiMI	CAYNNNNRTG	2 cut(s)	345, 875
SmlI	CTYRAG	1 cut(s)	1220
SmoI	CTYRAG	1 cut(s)	1220
SphI	GCATGC	1 cut(s)	1381
SsiI	CCGC	1 cut(s)	618
SspMI	CTAG	3 cut(s)	671, 749, 1050
StyI	CCWWGG	3 cut(s)	514, 670, 883
TaaI	ACNGT	1 cut(s)	269
TaqI	TCGA	9 cut(s)	364, 762, 924, 943, 956, 1286, 1408, 1417, 1531
TatI	WGTACW	1 cut(s)	1402
TfiI	GAWTC	5 cut(s)	130, 320, 337, 1340, 1385
TscAI	CASTG	5 cut(s)	25, 316, 533, 895, 1179
TseFI	GTSAC	4 cut(s)	124, 311, 524, 1490
Tsp45I	GTSAC	4 cut(s)	124, 311, 524, 1490
TspDTI	ATGAA	3 cut(s)	329, 815, 887
TspRI	CASTG	5 cut(s)	25, 316, 533, 895, 1179
VpaK11BI	GGWCC	1 cut(s)	1509
VspI	ATTAAT	1 cut(s)	630
XapI	RAATTY	6 cut(s)	207, 305, 503, 551, 689, 1204
XceI	RCATGY	3 cut(s)	193, 722, 1381
XmaJI	CCTAGG	1 cut(s)	670
XmiI	GTMKAC	3 cut(s)	271, 496, 1212
XspI	CTAG	3 cut(s)	671, 749, 1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.