FvH4_4g21450

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
24512406 .. 24517005
4600 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21450.t2

Sequence Viewer

Length: 1506 bp
ATGGCATCTGATCTTAATGCTGAACTGGCCAAGAAGACATTTGTTTTTGGCTTAAAAGTTTGGGTATTAACAGGGATCCTTGTGGGAGTATTTATTGTGATGATTCTACTGGTGCTATCAATTTGTCTTACTTCACGAAAGAAATCCAGAAAGTCGAATGACATGCTTCCTCTTAACCAAATTCCAAATGTTTCAAGGGAAATCAAAGAGATTAGGGTCGATCAAGCTTCAGCGAATAACCACCGTGGTGCTTTCCTCACCCTTAATGAGAAATTCAGTGACAGAGAATCAGAGAAAGTTTTGATTCATAAAAATGGAGATAGTAGCAGTCGATCAGGCTCATTTAACAAAACAGAGAAGGAAAATGTTGGCTCTCAATCTGGAGATGAGAGTGGTGCAGGGTCAGTTTATGCGCAGAAGCCATCTTCACATCCTATAACTGCCCCTTCACCTCTTTGTGGTCTACCCGAGTTCTCTCACCTTGGTTGGGGTCACTGGTTTACACTAAGGGATCTTGAATTTGCAACAAACCGGTTTTCGAAGGAAAATGTCATTGGTGAGGGTGGATATGGAGTTGTTTATCGCGGTAATCTGATTAATGGAACTCCTGTGGCTGTGAAGAAGCTACTCAACAACCTAGGACAAGCAGAGAAGGAATTTAGAGTGGAAGTTGAGGCTATTGGGCATGTGAGACACAAAAACTTGGTTCGCCTTCTGGGATACTGCATCGAAGGCACCCATAGGATGCTGGTTTATGAGTATGTCAACAATGGAAATTTGGAGCAATGGCTTCATGGAGCTATGCGACATCATGGATATCTAACATGGGAGGCGCGCATGAAAGTTCTCCTTGGCACTGCTAAAGCGCTGGCTTATTTGCATGAGGCCATTGAGCCAAAAGTAGTGCATCGAGATATCAAATCAAGTAATATCTTGCTTGATGATGACTTCAATGCTAAGATATCTGACTTTGGTCTGGCAAAGATGCTAATGGCTGGAAAGAGCCATATCACGACTAGAGTTATGGGTACCTTCGGATATGTGGCCCCCGAATATGCCAATTCTGGCCTTTTAAATGAGAAGAGTGACGTTTATAGCTTTGGGGTTGTGATTTTGGAAGCAATTACTGGAAGAGATCCAGTGGATTATGGTCGGCAAGCACAAGAGGTAAATTTGGTAGACTGGCTCAAGATGATGGTTGGAAGTCGGCGTTCAGAGGAGGTGGTGGATCCAAATATTGAGACCAGGCCATCGACAAGCGCCCTTAAACGAGCCCTCTTGACTGCATTGAGGTGTGTAGATCCTGATTCTGATAAAAGACCAAAGATGGGTCAAGTTGTTCGCATGCTTGAATCCGAGGAATATCCTGTACTTCGAGAGGATCGAAGACGCCGAAAGAGTCAAGCAAGCAATGTGGAGGGCGAGTCTCAGAAAGAGAATTCTGATACAGACAGGAGTGACAATCCAGATACAAGGGCCGACACCAAAAAAAACAATCGAACATAG

Protein Analysis

502

Amino Acids

56.05

Weight (kDa)

8.88

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 180 - 447 2.2e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 182 - 450 1.2e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 414
Acc65I GGTACC 1 cut(s) 1028
AccB1I GGYRCC 2 cut(s) 734, 1028
AccI GTMKAC 2 cut(s) 463, 1179
AccII CGCG 2 cut(s) 585, 835
AciI CCGC 1 cut(s) 585
AclWI GGATC 8 cut(s) 70, 83, 519, 1130, 1223, 1236, 1295, 1389
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 7 cut(s) 180, 272, 518, 656, 775, 1171, 1438
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 1390
AfaI GTAC 2 cut(s) 1030, 1371
AfeI AGCGCT 1 cut(s) 867
AfiI CCNNNNNNNGG 3 cut(s) 458, 487, 1328
AgeI ACCGGT 1 cut(s) 531
AgsI TTSAA 4 cut(s) 195, 518, 952, 1352
AjnI CCWGG 1 cut(s) 1244
AjuI GAANNNNNNNTTGG 2 cut(s) 537, 569
AleI CACNNNNGTG 1 cut(s) 246
AluBI AGCT 4 cut(s) 227, 625, 800, 1098
AluI AGCT 4 cut(s) 227, 625, 800, 1098
Alw26I GTCTC 3 cut(s) 685, 1235, 1431
AlwI GGATC 8 cut(s) 70, 83, 519, 1130, 1223, 1236, 1295, 1389
Ama87I CYCGRG 1 cut(s) 467
Aor51HI AGCGCT 1 cut(s) 867
AoxI GGCC 6 cut(s) 27, 885, 1044, 1066, 1247, 1476
ApoI RAATTY 7 cut(s) 180, 272, 518, 656, 775, 1171, 1438
AseI ATTAAT 1 cut(s) 597
AsiGI ACCGGT 1 cut(s) 531
Asp718I GGTACC 1 cut(s) 1028
AspA2I CCTAGG 1 cut(s) 637
AspLEI GCGC 5 cut(s) 415, 835, 837, 868, 1262
AspS9I GGNCC 2 cut(s) 1045, 1476
AsuHPI GGTGA 4 cut(s) 250, 441, 470, 569
AsuII TTCGAA 1 cut(s) 539
AvaI CYCGRG 1 cut(s) 467
AvrII CCTAGG 1 cut(s) 637
BalI TGGCCA 1 cut(s) 29
BamHI GGATCC 2 cut(s) 75, 1228
BanI GGYRCC 2 cut(s) 734, 1028
BanII GRGCYC 1 cut(s) 1276
BbsI GAAGAC 2 cut(s) 41, 1393
BccI CCATC 4 cut(s) 430, 1189, 1258, 1321
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BciT130I CCWGG 1 cut(s) 1246
BciVI GTATCC 1 cut(s) 713
BcoDI GTCTC 3 cut(s) 685, 1235, 1431
BfaI CTAG 2 cut(s) 638, 1017
BfoI RGCGCY 2 cut(s) 869, 1263
BfuI GTATCC 1 cut(s) 713
BlnI CCTAGG 1 cut(s) 637
Bme1390I CCNGG 1 cut(s) 1246
BmeT110I CYCGRG 1 cut(s) 467
BmgT120I GGNCC 2 cut(s) 1045, 1476
BmiI GGNNCC 5 cut(s) 77, 736, 1030, 1047, 1230
BmrFI CCNGG 1 cut(s) 1246
BmsI GCATC 5 cut(s) 14, 735, 735, 916, 975
BoxI GACNNNNGTC 1 cut(s) 972
BpiI GAAGAC 2 cut(s) 41, 1393
BpmI CTGGAG 1 cut(s) 402
Bpu14I TTCGAA 1 cut(s) 539
BpuEI CTTGAG 1 cut(s) 1172
BsaHI GRCGYC 1 cut(s) 1390
BsaI GGTCTC 1 cut(s) 1235
BsaJI CCNNGG 5 cut(s) 244, 481, 637, 850, 1356
BsaWI WCCGGW 1 cut(s) 531
BsaXI ACNNNNNCTCC 2 cut(s) 1409, 1439
Bsc4I CCNNNNNNNGG 3 cut(s) 458, 487, 1328
Bse118I RCCGGY 1 cut(s) 531
Bse1I ACTGG 6 cut(s) 30, 114, 500, 1132, 1139, 1187
Bse3DI GCAATG 2 cut(s) 791, 1417
BseBI CCWGG 1 cut(s) 1246
BseDI CCNNGG 5 cut(s) 244, 481, 637, 850, 1356
BseGI GGATG 2 cut(s) 430, 750
BseLI CCNNNNNNNGG 3 cut(s) 458, 487, 1328
BseMI GCAATG 2 cut(s) 791, 1417
BseMII CTCAG 1 cut(s) 1442
BseNI ACTGG 6 cut(s) 30, 114, 500, 1132, 1139, 1187
BsePI GCGCGC 1 cut(s) 833
BseRI GAGGAG 1 cut(s) 1232
BsgI GTGCAG 1 cut(s) 417
Bsh1236I CGCG 2 cut(s) 585, 835
BshFI GGCC 6 cut(s) 29, 887, 1046, 1068, 1249, 1478
BshNI GGYRCC 2 cut(s) 734, 1028
BshTI ACCGGT 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 467
BsiSI CCGG 1 cut(s) 532
BslI CCNNNNNNNGG 3 cut(s) 458, 487, 1328
BsmAI GTCTC 3 cut(s) 685, 1235, 1431
BsnI GGCC 6 cut(s) 29, 887, 1046, 1068, 1249, 1478
Bso31I GGTCTC 1 cut(s) 1235
BsoBI CYCGRG 1 cut(s) 467
Bsp119I TTCGAA 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 1276
Bsp143I GATC 9 cut(s) 10, 75, 220, 332, 511, 1135, 1228, 1300, 1381
BspACI CCGC 1 cut(s) 585
BspANI GGCC 6 cut(s) 29, 887, 1046, 1068, 1249, 1478
BspCNI CTCAG 1 cut(s) 1441
BspFNI CGCG 2 cut(s) 585, 835
BspLI GGNNCC 5 cut(s) 77, 736, 1030, 1047, 1230
BspPI GGATC 8 cut(s) 70, 83, 519, 1130, 1223, 1236, 1295, 1389
BspT104I TTCGAA 1 cut(s) 539
BspT107I GGYRCC 2 cut(s) 734, 1028
BspTNI GGTCTC 1 cut(s) 1235
BsrDI GCAATG 2 cut(s) 791, 1417
BsrFI RCCGGY 1 cut(s) 531
BsrI ACTGG 6 cut(s) 30, 114, 500, 1132, 1139, 1187
BssAI RCCGGY 1 cut(s) 531
BssECI CCNNGG 5 cut(s) 244, 481, 637, 850, 1356
BssHII GCGCGC 1 cut(s) 833
BssMI GATC 9 cut(s) 10, 75, 220, 332, 511, 1135, 1228, 1300, 1381
BssNI GRCGYC 1 cut(s) 1390
BssT1I CCWWGG 3 cut(s) 481, 637, 850
Bst2UI CCWGG 1 cut(s) 1246
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 2 cut(s) 1076, 1126
BstACI GRCGYC 1 cut(s) 1390
BstBI TTCGAA 1 cut(s) 539
BstC8I GCNNGC 5 cut(s) 835, 870, 1158, 1346, 1408
BstDEI CTNAG 3 cut(s) 506, 957, 1428
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 2 cut(s) 430, 750
BstFNI CGCG 2 cut(s) 585, 835
BstH2I RGCGCY 2 cut(s) 869, 1263
BstHHI GCGC 5 cut(s) 415, 835, 837, 868, 1262
BstKTI GATC 9 cut(s) 13, 78, 223, 335, 514, 1138, 1231, 1303, 1384
BstMAI GTCTC 3 cut(s) 685, 1235, 1431
BstMBI GATC 9 cut(s) 10, 75, 220, 332, 511, 1135, 1228, 1300, 1381
BstMWI GCNNNNNNNGC 2 cut(s) 26, 732
BstNI CCWGG 1 cut(s) 1246
BstNSI RCATGY 3 cut(s) 166, 689, 1348
BstPAI GACNNNNGTC 1 cut(s) 972
BstSCI CCNGG 1 cut(s) 1244
BstUI CGCG 2 cut(s) 585, 835
BstV2I GAAGAC 2 cut(s) 41, 1393
BstX2I RGATCY 5 cut(s) 75, 511, 1135, 1228, 1300
BstYI RGATCY 5 cut(s) 75, 511, 1135, 1228, 1300
BsuI GTATCC 1 cut(s) 713
BsuRI GGCC 6 cut(s) 29, 887, 1046, 1068, 1249, 1478
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 2 cut(s) 430, 750
BtsI GCAGTG 1 cut(s) 855
BtsIMutI CAGTG 4 cut(s) 283, 493, 855, 1146
Cac8I GCNNGC 5 cut(s) 835, 870, 1158, 1346, 1408
CfoI GCGC 5 cut(s) 415, 835, 837, 868, 1262
Cfr10I RCCGGY 1 cut(s) 531
Cfr13I GGNCC 2 cut(s) 1045, 1476
CseI GACGC 1 cut(s) 1398
Csp6I GTAC 2 cut(s) 1029, 1370
CspAI ACCGGT 1 cut(s) 531
CspCI CAANNNNNGTGG 2 cut(s) 1395, 1430
CviAII CATG 8 cut(s) 163, 686, 794, 812, 825, 838, 881, 1345
CviQI GTAC 2 cut(s) 1029, 1370
DdeI CTNAG 3 cut(s) 506, 957, 1428
DpnI GATC 9 cut(s) 12, 77, 222, 334, 513, 1137, 1230, 1302, 1383
DpnII GATC 9 cut(s) 10, 75, 220, 332, 511, 1135, 1228, 1300, 1381
DraI TTTAAA 1 cut(s) 1074
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 2 cut(s) 1076, 1126
EarI CTCTTC 2 cut(s) 1076, 1126
Eco130I CCWWGG 3 cut(s) 481, 637, 850
Eco24I GRGCYC 1 cut(s) 1276
Eco31I GGTCTC 1 cut(s) 1235
Eco32I GATATC 3 cut(s) 818, 916, 963
Eco47III AGCGCT 1 cut(s) 867
Eco57I CTGAAG 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 467
EcoRI GAATTC 1 cut(s) 1438
EcoRII CCWGG 1 cut(s) 1244
EcoRV GATATC 3 cut(s) 818, 916, 963
EcoT14I CCWWGG 3 cut(s) 481, 637, 850
EcoT38I GRGCYC 1 cut(s) 1276
ErhI CCWWGG 3 cut(s) 481, 637, 850
FaeI CATG 8 cut(s) 166, 689, 797, 815, 828, 841, 884, 1348
FalI AAGNNNNNCTT 2 cut(s) 834, 866
FatI CATG 8 cut(s) 162, 685, 793, 811, 824, 837, 880, 1344
FblI GTMKAC 2 cut(s) 463, 1179
FokI GGATG 2 cut(s) 417, 757
FriOI GRGCYC 1 cut(s) 1276
FspBI CTAG 2 cut(s) 638, 1017
FspI TGCGCA 1 cut(s) 414
GlaI GCGC 5 cut(s) 414, 834, 836, 867, 1261
GsuI CTGGAG 1 cut(s) 402
HaeII RGCGCY 2 cut(s) 869, 1263
HaeIII GGCC 6 cut(s) 29, 887, 1046, 1068, 1249, 1478
HapII CCGG 1 cut(s) 532
HgaI GACGC 1 cut(s) 1398
HhaI GCGC 5 cut(s) 415, 835, 837, 868, 1262
Hin1I GRCGYC 1 cut(s) 1390
Hin1II CATG 8 cut(s) 166, 689, 797, 815, 828, 841, 884, 1348
Hin6I GCGC 5 cut(s) 413, 833, 835, 866, 1260
HinP1I GCGC 5 cut(s) 413, 833, 835, 866, 1260
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HindIII AAGCTT 1 cut(s) 225
HinfI GANTC 7 cut(s) 103, 287, 304, 1307, 1352, 1399, 1424
HpaII CCGG 1 cut(s) 532
HphI GGTGA 4 cut(s) 250, 441, 470, 569
Hpy166II GTNNAC 4 cut(s) 464, 501, 766, 1180
Hpy8I GTNNAC 4 cut(s) 464, 501, 766, 1180
HpyAV CCTTC 7 cut(s) 352, 456, 535, 646, 722, 725, 1042
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 1089
HpyCH4V TGCA 6 cut(s) 398, 524, 726, 880, 907, 1286
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 732
HpyF3I CTNAG 3 cut(s) 506, 957, 1428
HpySE526I ACGT 1 cut(s) 1089
Hsp92I GRCGYC 1 cut(s) 1390
Hsp92II CATG 8 cut(s) 166, 689, 797, 815, 828, 841, 884, 1348
HspAI GCGC 5 cut(s) 413, 833, 835, 866, 1260
KpnI GGTACC 1 cut(s) 1032
Kzo9I GATC 9 cut(s) 10, 75, 220, 332, 511, 1135, 1228, 1300, 1381
LmnI GCTCC 2 cut(s) 781, 797
LweI GCATC 5 cut(s) 14, 735, 735, 916, 975
MaeI CTAG 2 cut(s) 638, 1017
MaeII ACGT 1 cut(s) 1089
MaeIII GTNAC 4 cut(s) 278, 491, 1085, 1457
MalI GATC 9 cut(s) 12, 77, 222, 334, 513, 1137, 1230, 1302, 1383
MboI GATC 9 cut(s) 10, 75, 220, 332, 511, 1135, 1228, 1300, 1381
MboII GAAGA 6 cut(s) 46, 417, 631, 1093, 1143, 1398
MflI RGATCY 5 cut(s) 75, 511, 1135, 1228, 1300
MhlI GDGCHC 1 cut(s) 1276
MlsI TGGCCA 1 cut(s) 29
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 2 cut(s) 1408, 1433
MmeI TCCRAC 1 cut(s) 1180
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
MseI TTAA 9 cut(s) 15, 53, 68, 174, 264, 345, 597, 1073, 1266
MslI CAYNNNNRTG 3 cut(s) 246, 312, 1291
Msp20I TGGCCA 1 cut(s) 29
MspI CCGG 1 cut(s) 532
MspR9I CCNGG 1 cut(s) 1246
MvaI CCWGG 1 cut(s) 1246
MvnI CGCG 2 cut(s) 585, 835
MwoI GCNNNNNNNGC 2 cut(s) 26, 732
NdeII GATC 9 cut(s) 10, 75, 220, 332, 511, 1135, 1228, 1300, 1381
NlaIII CATG 8 cut(s) 166, 689, 797, 815, 828, 841, 884, 1348
NlaIV GGNNCC 5 cut(s) 77, 736, 1030, 1047, 1230
NmuCI GTSAC 4 cut(s) 278, 491, 1085, 1457
NsbI TGCGCA 1 cut(s) 414
NspI RCATGY 3 cut(s) 166, 689, 1348
NspV TTCGAA 1 cut(s) 539
OliI CACNNNNGTG 1 cut(s) 246
PaeI GCATGC 1 cut(s) 1348
PauI GCGCGC 1 cut(s) 833
PcsI WCGNNNNNNNCGW 2 cut(s) 1381, 1390
PfeI GAWTC 5 cut(s) 103, 287, 304, 1307, 1352
PinAI ACCGGT 1 cut(s) 531
PleI GAGTC 2 cut(s) 1407, 1432
PpsI GAGTC 2 cut(s) 1407, 1432
PshAI GACNNNNGTC 1 cut(s) 972
PshBI ATTAAT 1 cut(s) 597
Psp6I CCWGG 1 cut(s) 1244
PspGI CCWGG 1 cut(s) 1244
PspN4I GGNNCC 5 cut(s) 77, 736, 1030, 1047, 1230
PspPI GGNCC 2 cut(s) 1045, 1476
PsuI RGATCY 5 cut(s) 75, 511, 1135, 1228, 1300
PteI GCGCGC 1 cut(s) 833
RsaI GTAC 2 cut(s) 1030, 1371
RsaNI GTAC 2 cut(s) 1029, 1370
RseI CAYNNNNRTG 3 cut(s) 246, 312, 1291
SaqAI TTAA 9 cut(s) 15, 53, 68, 174, 264, 345, 597, 1073, 1266
Sau3AI GATC 9 cut(s) 10, 75, 220, 332, 511, 1135, 1228, 1300, 1381
Sau96I GGNCC 2 cut(s) 1045, 1476
SchI GAGTC 2 cut(s) 1408, 1433
ScrFI CCNGG 1 cut(s) 1246
SduI GDGCHC 1 cut(s) 1276
SfaNI GCATC 5 cut(s) 14, 735, 735, 916, 975
SfuI TTCGAA 1 cut(s) 539
SmiMI CAYNNNNRTG 3 cut(s) 246, 312, 1291
SmlI CTYRAG 1 cut(s) 1187
SmoI CTYRAG 1 cut(s) 1187
SphI GCATGC 1 cut(s) 1348
SsiI CCGC 1 cut(s) 585
SspI AATATT 1 cut(s) 1237
SspMI CTAG 2 cut(s) 638, 1017
StyD4I CCNGG 1 cut(s) 1244
StyI CCWWGG 3 cut(s) 481, 637, 850
TaaI ACNGT 1 cut(s) 245
TaiI ACGT 1 cut(s) 1092
TatI WGTACW 1 cut(s) 1369
TfiI GAWTC 5 cut(s) 103, 287, 304, 1307, 1352
Tru1I TTAA 9 cut(s) 15, 53, 68, 174, 264, 345, 597, 1073, 1266
Tru9I TTAA 9 cut(s) 15, 53, 68, 174, 264, 345, 597, 1073, 1266
TscAI CASTG 4 cut(s) 283, 500, 862, 1146
TseFI GTSAC 4 cut(s) 278, 491, 1085, 1457
Tsp45I GTSAC 4 cut(s) 278, 491, 1085, 1457
TspDTI ATGAA 3 cut(s) 296, 782, 854
TspRI CASTG 4 cut(s) 283, 500, 862, 1146
VspI ATTAAT 1 cut(s) 597
XapI RAATTY 7 cut(s) 180, 272, 518, 656, 775, 1171, 1438
XceI RCATGY 3 cut(s) 166, 689, 1348
XmaJI CCTAGG 1 cut(s) 637
XmiI GTMKAC 2 cut(s) 463, 1179
XspI CTAG 2 cut(s) 638, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.