Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002303

Physical Location & Seq

Genomic Coordinates Forward (+)

37539120 .. 37541109

Gene Structure 1990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0217300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAGTTGAGAAAAGGTGCATGGACCAAAGAGGAAGATCATCTTCTCAGGAAATGCATTGAAAAACATGGAGAAGGAAGATGGCACAAGATTCCTCTCCAAGCAGGCTTAAAGAGATGCAGAAAGAGCTGTAGAATGAGGTGGTTGAATTACCTGAAGCCAACCATCAAGAGGGGAGAATTTGAAGATGATGAAGTAGATCTAATGATTAGGCTTTACAAGCTTTTAGGAAACAGGTGGTCATTGATTGCTGGCCGACTTCCGGGAAGAACCTCAAATGATGTGAAAAACTATTGGAGTGCTCGGCGAAGGAGAAATATGGATTTGAACATCGTAAAAGATAAATCTCGAGAAATGACAAAGACCACTATAATAAAGCCTCGACCACGGATCTTCACAAAAAGTTTACATATTCCGGGTGATAGAGCAGCAACCTCAAAGAATAGTAATATAAACATATCATTACCCCCAGTAAATGGACTTGATGAGTGGAAAATTGTACCAGCAGAACATGTCTCTACAAACTTATGGGTTCAAGATATGGCCTCAGTGACCGAAACATGTGTCAATGTTGCCGAACGAAGTTTCGAATCTGACCTCTGGCATTTTCTCCAAGAAGAGATGAGAGAACAAGATTCAGACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

215

Amino Acids

25.31

Weight (kDa)

9.58

Isoelectric Point (pI)

57.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 52	3.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	8 - 67	2.5e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	58 - 99	1e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09440 AT1G09440 AT1G56720 AT1G56720 AT1G56720 AT1G56720
fragaria_vesca	FvH4_4g21450 FvH4_4g21450 FvH4_6g08381
malus_domestica	MD04G1187400.v1.1 MD12G1201000.v1.1 MD13G1141100.v1.1 MD16G1137200.v1.1
prunus_persica	Prupe.1G106300_v2.0.a1 Prupe.1G106300_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1 Prupe.6G306000_v2.0.a1
pyrus_communis	pycom04g16550 pycom12g18730 pycom13g12260 pycom16g12090 pycom16g12100
rosa_chinensis	RchiOBHm_Chr3g0458331 RchiOBHm_Chr4g0427381
rosa_laevigata	RLG00000007248 RLG00000025168
rosa_multiflora	Rmu_sc0003813.1_g000020 Rmu_sc0007338.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369050 Rroxscaffold_6G00421160
rosa_rugosa	Rorug03G0025800 Rorug03G0025800 Rorug04G0217200 Rorug04G0217300 Rorug04G0217400 Rorug04G0217500
rosa_samantha	Rh3BG089600 Rh4AG273600 Rh4DG276600
rosa_wichuraiana	Rw3G007360 Rw4G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	476
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	3 cut(s)	171, 262, 476
AflIII	ACRYGT	2 cut(s)	511, 560
AgsI	TTSAA	5 cut(s)	62, 148, 185, 328, 536
AluBI	AGCT	2 cut(s)	129, 223
AluI	AGCT	2 cut(s)	129, 223
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	520
AlwI	GGATC	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	348
AoxI	GGCC	2 cut(s)	253, 543
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	179
ArsI	GACNNNNNNTTYG	2 cut(s)	549, 581
AspS9I	GGNCC	1 cut(s)	24
AsuC2I	CCSGG	2 cut(s)	264, 417
AsuHPI	GGTGA	1 cut(s)	431
AsuII	TTCGAA	1 cut(s)	588
AvaI	CYCGRG	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	2 cut(s)	75, 173
BcnI	CCSGG	2 cut(s)	264, 417
BcoDI	GTCTC	1 cut(s)	520
BfmI	CTRYAG	1 cut(s)	130
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	2 cut(s)	264, 417
Bme18I	GGWCC	1 cut(s)	24
BmeT110I	CYCGRG	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	24
BmrFI	CCNGG	2 cut(s)	264, 417
BmrI	ACTGGG	1 cut(s)	464
BmsI	GCATC	1 cut(s)	107
BmuI	ACTGGG	1 cut(s)	464
Bpu14I	TTCGAA	1 cut(s)	588
BpuMI	CCSGG	2 cut(s)	264, 417
BsaJI	CCNNGG	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 262, 476
Bse1I	ACTGG	1 cut(s)	470
BseDI	CCNNGG	1 cut(s)	386
BseLI	CCNNNNNNNGG	3 cut(s)	171, 262, 476
BseMII	CTCAG	2 cut(s)	61, 561
BseNI	ACTGG	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	440
BshFI	GGCC	2 cut(s)	255, 545
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	263, 416
BslI	CCNNNNNNNGG	3 cut(s)	171, 262, 476
BsmAI	GTCTC	1 cut(s)	520
BsnI	GGCC	2 cut(s)	255, 545
BsoBI	CYCGRG	1 cut(s)	348
Bsp119I	TTCGAA	1 cut(s)	588
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	37, 199, 390
BspANI	GGCC	2 cut(s)	255, 545
BspCNI	CTCAG	2 cut(s)	60, 560
BspPI	GGATC	1 cut(s)	398
BspT104I	TTCGAA	1 cut(s)	588
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	3 cut(s)	37, 199, 390
Bst6I	CTCTTC	1 cut(s)	612
BstBI	TTCGAA	1 cut(s)	588
BstC8I	GCNNGC	2 cut(s)	106, 253
BstDEI	CTNAG	2 cut(s)	47, 547
BstDSI	CCRYGG	1 cut(s)	386
BstKTI	GATC	3 cut(s)	40, 202, 393
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	3 cut(s)	37, 199, 390
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 220
BstNSI	RCATGY	2 cut(s)	515, 564
BstSCI	CCNGG	2 cut(s)	262, 415
BstSFI	CTRYAG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	440
BstX2I	RGATCY	2 cut(s)	199, 390
BstYI	RGATCY	2 cut(s)	199, 390
BsuRI	GGCC	2 cut(s)	255, 545
BtgI	CCRYGG	1 cut(s)	386
BtsIMutI	CAGTG	1 cut(s)	555
Cac8I	GCNNGC	2 cut(s)	106, 253
Cfr13I	GGNCC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	500
CviAII	CATG	4 cut(s)	21, 68, 512, 561
CviJI	RGCY	8 cut(s)	108, 129, 160, 214, 223, 255, 379, 545
CviKI_1	RGCY	8 cut(s)	108, 129, 160, 214, 223, 255, 379, 545
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	2 cut(s)	47, 547
DpnI	GATC	3 cut(s)	39, 201, 392
DpnII	GATC	3 cut(s)	37, 199, 390
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
Eco47I	GGWCC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	348
EcoT22I	ATGCAT	1 cut(s)	59
FaeI	CATG	4 cut(s)	24, 71, 515, 564
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FatI	CATG	4 cut(s)	20, 67, 511, 560
Fnu4HI	GCNGC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	429
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	2 cut(s)	255, 545
HapII	CCGG	2 cut(s)	263, 416
Hin1II	CATG	4 cut(s)	24, 71, 515, 564
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	3 cut(s)	91, 590, 635
HpaII	CCGG	2 cut(s)	263, 416
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	3 cut(s)	595, 640, 647
Hpy188III	TCNNGA	5 cut(s)	49, 169, 348, 350, 536
Hpy8I	GTNNAC	1 cut(s)	407
HpyAV	CCTTC	2 cut(s)	68, 303
HpyCH4V	TGCA	3 cut(s)	20, 57, 120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 220
HpyF3I	CTNAG	2 cut(s)	47, 547
Hsp92II	CATG	4 cut(s)	24, 71, 515, 564
Kzo9I	GATC	3 cut(s)	37, 199, 390
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	3 cut(s)	39, 201, 392
MboI	GATC	3 cut(s)	37, 199, 390
MboII	GAAGA	7 cut(s)	35, 47, 90, 197, 279, 385, 629
MflI	RGATCY	2 cut(s)	199, 390
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	3 cut(s)	148, 179, 495
MnlI	CCTC	9 cut(s)	25, 105, 132, 165, 283, 390, 445, 556, 608
Mph1103I	ATGCAT	1 cut(s)	59
MseI	TTAA	1 cut(s)	110
MspI	CCGG	2 cut(s)	263, 416
MspR9I	CCNGG	2 cut(s)	264, 417
MwoI	GCNNNNNNNGC	2 cut(s)	126, 220
NciI	CCSGG	2 cut(s)	264, 417
NdeII	GATC	3 cut(s)	37, 199, 390
NlaIII	CATG	4 cut(s)	24, 71, 515, 564
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	550
NsiI	ATGCAT	1 cut(s)	59
NspI	RCATGY	2 cut(s)	515, 564
NspV	TTCGAA	1 cut(s)	588
PaeR7I	CTCGAG	1 cut(s)	348
PciI	ACATGT	2 cut(s)	511, 560
PfeI	GAWTC	3 cut(s)	91, 590, 635
PflMI	CCANNNNNTGG	1 cut(s)	476
PfoI	TCCNGGA	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	430
PscI	ACATGT	2 cut(s)	511, 560
PspPI	GGNCC	1 cut(s)	24
PsuI	RGATCY	2 cut(s)	199, 390
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	3 cut(s)	37, 199, 390
Sau96I	GGNCC	1 cut(s)	24
ScrFI	CCNGG	2 cut(s)	264, 417
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	9 cut(s)	19, 131, 143, 156, 225, 239, 275, 437, 600
SfaNI	GCATC	1 cut(s)	107
SfcI	CTRYAG	1 cut(s)	130
Sfr274I	CTCGAG	1 cut(s)	348
SfuI	TTCGAA	1 cut(s)	588
SinI	GGWCC	1 cut(s)	24
SlaI	CTCGAG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
Sse9I	AATT	3 cut(s)	148, 179, 495
StyD4I	CCNGG	2 cut(s)	262, 415
TaqI	TCGA	3 cut(s)	349, 382, 588
TaqII	GACCGA	1 cut(s)	569
TasI	AATT	3 cut(s)	148, 179, 495
TfiI	GAWTC	3 cut(s)	91, 590, 635
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	403
TspRI	CASTG	1 cut(s)	555
Van91I	CCANNNNNTGG	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	1 cut(s)	179
XceI	RCATGY	2 cut(s)	515, 564
XhoI	CTCGAG	1 cut(s)	348
Zsp2I	ATGCAT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.