MD04G1187400.v1.1

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
27807205 .. 27811523
4319 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1187400.v1.1.491

Sequence Viewer

Length: 1536 bp
ATGGCCTCTGATCTCAAATCAGAGTTATCCAAGGAAACTCCCATCTTTAATCTAAAAGTCTGGGAAGTAATTGGAATTGCTGTTGCATTGTTTATCATTGCTATCCTTACTGTGCTATCAATGTGTCTTACTTGGCGTAAGAAATCAAGAAAAGCTCGTGACAGGATACCCCTTAGTCAAATCCCAACTGTCTCGAAAGAGATTAAGGAAGTGCGGGTGGAGCAAGTATCCGCTAGGGAGTTTGCTCCTCGTGATGGAATTCTTCTCACCATTCACGACAAATCTAGTGACAGAGAATCCGATAAGATCATGGTCCATTTGGATATGGGAAAATCAAATAATGGAGAAAATAGCAGCCAGTCAGGTTCGTTTAATCGTCTAGAAAATGATGGTGTCCTGTCCCATTCTGGAGAAGAAGGGAGTTCCAGCACGGTTACTGTGTATAAGGCTTCCTCATCGTATCCAATAACTGCACCGTCTCCTCTGGTTGGTCTGCCTGAATTCTCACATTTGGGTTGGGGGCACTGGTTTACATTAAGGGACCTGGAGCTTGCAACAAACCGGTTTGCAAAGGATAATGTCCTTGGTGAGGGTGGATATGGAGTTGTTTACCGGGGACATCTCATCAATGGGACTCCAGTGGCCGTTAAAAAGATCCTAAACAACCTAGGCCAAGCCGAGAAAGAATTCAGGGTGGAAGTTGAAGCAATTGGCCATGTGCGCCACAAGAATTTGGTTCGCCTCCTGGGATACTGCGTTGAAGGGACTCATAGGATTTTGGTCTACGAGTATGTCAACAATGGAAACTTGGAGCAGTGGCTTCACGGAGCAATGCGCCACCATGGATATCTCACTTGGGAAGCACGCATAAAGGTTCTCCTTGGGACCGCAAAAGCTCTTGCCTATTTACATGAGGCCATTGAACCAAAAGTGATACACCGAGACATTAAGTCAAGCAATATATTGATTGATGAAGACTTCAATTCCAAGGTATCTGATTTTGGGCTGGCCAAGCTGCTGGGTGCAGGAACTAGTCATGTGACAACGCGTGTTATGGGAACCTTTGGGTATGTGGCTCCTGAATATGCTAATACCGGACTATTGAATGAAAAGAGCGATGTATATAGCTTTGGGGTTTTGCTCTTAGAAGCAATTACTGGAAGAGACCCTGTGGACTATGGTCGCCCTGCTCATGAGGTAAATCTGGTTGATTGGCTAAAAATGATGGTTGGAAGCAGAAGATCCGAAGAAGTGGTAGACCCAAACATTGAGGTGAGACCATCGACAAGAGCCCTAAAACGAGCCCTCTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAAAAAAGACCCAAGATGAGCCAAGTTGTCCGTATGCTCGAATCTGAGGAATATCCTATACCAAGAGAGGATCGAAGGCACCGAAGAACTGAAGGAGGTAGTGTGGAAATTGATTCCCAGCGTGAAAATTCAGACACTGATCGGAGTGATTATCCGGGTTCAAGATCAGAGAGCAAAGGCTACCAACGGACGTAA

Protein Analysis

512

Amino Acids

57.25

Weight (kDa)

7.31

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 190 - 458 1.3e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 192 - 460 8.3e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1419
AccI GTMKAC 2 cut(s) 783, 1257
AccII CGCG 1 cut(s) 1048
AciI CCGC 3 cut(s) 214, 231, 888
AclWI GGATC 4 cut(s) 649, 1236, 1325, 1419
AcoI YGGCCR 3 cut(s) 642, 712, 1008
AcsI RAATTY 5 cut(s) 258, 500, 686, 730, 1468
AcuI CTGAAG 1 cut(s) 1452
AfiI CCNNNNNNNGG 3 cut(s) 254, 488, 589
AflIII ACRYGT 1 cut(s) 1046
AgeI ACCGGT 1 cut(s) 561
AgsI TTSAA 6 cut(s) 704, 761, 923, 982, 1105, 1503
AhdI GACNNNNNGTC 1 cut(s) 949
AhlI ACTAGT 1 cut(s) 1031
AjnI CCWGG 2 cut(s) 543, 744
AluBI AGCT 5 cut(s) 155, 550, 896, 1015, 1128
AluI AGCT 5 cut(s) 155, 550, 896, 1015, 1128
Alw26I GTCTC 5 cut(s) 196, 483, 936, 1158, 1270
AlwI GGATC 4 cut(s) 649, 1236, 1325, 1419
AlwNI CAGNNNCTG 2 cut(s) 1340, 1478
AoxI GGCC 6 cut(s) 3, 642, 670, 712, 915, 1008
ApeKI GCWGC 2 cut(s) 354, 1015
ApoI RAATTY 5 cut(s) 258, 500, 686, 730, 1468
AsiGI ACCGGT 1 cut(s) 561
Asp700I GAANNNNTTC 1 cut(s) 686
AspA2I CCTAGG 1 cut(s) 667
AspLEI GCGC 2 cut(s) 723, 837
AspS9I GGNCC 3 cut(s) 313, 541, 885
AsuC2I CCSGG 2 cut(s) 614, 1497
AsuHPI GGTGA 3 cut(s) 259, 599, 1285
AvaII GGWCC 3 cut(s) 313, 541, 885
AvrII CCTAGG 1 cut(s) 667
BaeGI GKGCMC 1 cut(s) 525
BalI TGGCCA 2 cut(s) 714, 1010
BanI GGYRCC 1 cut(s) 1419
BanII GRGCYC 2 cut(s) 1294, 1306
BauI CACGAG 2 cut(s) 156, 249
BbsI GAAGAC 1 cut(s) 981
BbvI GCAGC 2 cut(s) 366, 1002
BccI CCATC 5 cut(s) 50, 248, 383, 1219, 1288
BceAI ACGGC 1 cut(s) 629
BciT130I CCWGG 2 cut(s) 545, 746
BciVI GTATCC 4 cut(s) 159, 238, 471, 743
BcnI CCSGG 2 cut(s) 614, 1497
BcoDI GTCTC 5 cut(s) 196, 483, 936, 1158, 1270
BcuI ACTAGT 1 cut(s) 1031
BfaI CTAG 5 cut(s) 234, 285, 380, 668, 1032
BfuI GTATCC 4 cut(s) 159, 238, 471, 743
BisI GCNGC 2 cut(s) 355, 1016
BlnI CCTAGG 1 cut(s) 667
BlsI GCNGC 2 cut(s) 356, 1017
Bme1390I CCNGG 4 cut(s) 545, 614, 746, 1497
Bme18I GGWCC 3 cut(s) 313, 541, 885
BmeRI GACNNNNNGTC 1 cut(s) 949
BmgT120I GGNCC 3 cut(s) 313, 541, 885
BmiI GGNNCC 5 cut(s) 542, 886, 1060, 1077, 1421
BmrFI CCNGG 4 cut(s) 545, 614, 746, 1497
BoxI GACNNNNGTC 1 cut(s) 1179
BpiI GAAGAC 1 cut(s) 981
BpmI CTGGAG 3 cut(s) 429, 566, 621
BpuMI CCSGG 2 cut(s) 614, 1497
BsaI GGTCTC 2 cut(s) 1158, 1270
BsaJI CCNNGG 8 cut(s) 30, 583, 613, 667, 745, 841, 880, 987
BsaWI WCCGGW 2 cut(s) 561, 1094
BsaXI ACNNNNNCTCC 2 cut(s) 1428, 1458
Bsc4I CCNNNNNNNGG 3 cut(s) 254, 488, 589
Bse118I RCCGGY 1 cut(s) 561
Bse1I ACTGG 4 cut(s) 358, 530, 638, 1162
Bse3DI GCAATG 2 cut(s) 96, 837
BseBI CCWGG 2 cut(s) 545, 746
BseDI CCNNGG 8 cut(s) 30, 583, 613, 667, 745, 841, 880, 987
BseLI CCNNNNNNNGG 3 cut(s) 254, 488, 589
BseMI GCAATG 2 cut(s) 96, 837
BseMII CTCAG 1 cut(s) 1377
BseNI ACTGG 4 cut(s) 358, 530, 638, 1162
BseRI GAGGAG 2 cut(s) 237, 471
BseSI GKGCMC 1 cut(s) 525
BseXI GCAGC 2 cut(s) 366, 1002
BseYI CCCAGC 2 cut(s) 1018, 1458
BsgI GTGCAG 2 cut(s) 456, 1044
Bsh1236I CGCG 1 cut(s) 1048
BshFI GGCC 6 cut(s) 5, 644, 672, 714, 917, 1010
BshNI GGYRCC 1 cut(s) 1419
BshTI ACCGGT 1 cut(s) 561
BsiSI CCGG 4 cut(s) 562, 613, 1095, 1496
BslFI GGGAC 6 cut(s) 385, 554, 630, 646, 778, 898
BslI CCNNNNNNNGG 3 cut(s) 254, 488, 589
BsmAI GTCTC 5 cut(s) 196, 483, 936, 1158, 1270
BsmBI CGTCTC 1 cut(s) 483
BsmFI GGGAC 6 cut(s) 385, 554, 630, 646, 778, 898
BsnI GGCC 6 cut(s) 5, 644, 672, 714, 917, 1010
Bso31I GGTCTC 2 cut(s) 1158, 1270
Bsp1286I GDGCHC 3 cut(s) 525, 1294, 1306
Bsp143I GATC 8 cut(s) 10, 306, 654, 1241, 1330, 1411, 1480, 1505
Bsp19I CCATGG 1 cut(s) 841
BspACI CCGC 3 cut(s) 214, 231, 888
BspANI GGCC 6 cut(s) 5, 644, 672, 714, 917, 1010
BspCNI CTCAG 1 cut(s) 1378
BspFNI CGCG 1 cut(s) 1048
BspHI TCATGA 1 cut(s) 1192
BspLI GGNNCC 5 cut(s) 542, 886, 1060, 1077, 1421
BspPI GGATC 4 cut(s) 649, 1236, 1325, 1419
BspT107I GGYRCC 1 cut(s) 1419
BspTNI GGTCTC 2 cut(s) 1158, 1270
BsrDI GCAATG 2 cut(s) 96, 837
BsrFI RCCGGY 1 cut(s) 561
BsrI ACTGG 4 cut(s) 358, 530, 638, 1162
BssAI RCCGGY 1 cut(s) 561
BssECI CCNNGG 8 cut(s) 30, 583, 613, 667, 745, 841, 880, 987
BssMI GATC 8 cut(s) 10, 306, 654, 1241, 1330, 1411, 1480, 1505
BssSI CACGAG 2 cut(s) 156, 249
BssT1I CCWWGG 6 cut(s) 30, 583, 667, 841, 880, 987
Bst2BI CACGAG 2 cut(s) 156, 249
Bst2UI CCWGG 2 cut(s) 545, 746
Bst4CI ACNGT 5 cut(s) 112, 190, 433, 439, 477
Bst6I CTCTTC 1 cut(s) 1156
BstC8I GCNNGC 3 cut(s) 552, 865, 1008
BstDEI CTNAG 3 cut(s) 173, 1144, 1386
BstDSI CCRYGG 1 cut(s) 841
BstENI CCTNNNNNAGG 1 cut(s) 587
BstFNI CGCG 1 cut(s) 1048
BstHHI GCGC 2 cut(s) 723, 837
BstKTI GATC 8 cut(s) 13, 309, 657, 1244, 1333, 1414, 1483, 1508
BstMAI GTCTC 5 cut(s) 196, 483, 936, 1158, 1270
BstMBI GATC 8 cut(s) 10, 306, 654, 1241, 1330, 1411, 1480, 1505
BstMWI GCNNNNNNNGC 3 cut(s) 220, 720, 1012
BstNI CCWGG 2 cut(s) 545, 746
BstPAI GACNNNNGTC 1 cut(s) 1179
BstSCI CCNGG 4 cut(s) 543, 612, 744, 1495
BstSLI GKGCMC 1 cut(s) 525
BstUI CGCG 1 cut(s) 1048
BstV1I GCAGC 2 cut(s) 366, 1002
BstV2I GAAGAC 1 cut(s) 981
BstX2I RGATCY 2 cut(s) 654, 1241
BstXI CCANNNNNNTGG 1 cut(s) 1018
BstYI RGATCY 2 cut(s) 654, 1241
BsuI GTATCC 4 cut(s) 159, 238, 471, 743
BsuRI GGCC 6 cut(s) 5, 644, 672, 714, 917, 1010
BtgI CCRYGG 1 cut(s) 841
BtgZI GCGATG 1 cut(s) 1131
BtsI GCAGTG 1 cut(s) 821
BtsIMutI CAGTG 4 cut(s) 523, 645, 821, 1476
Cac8I GCNNGC 3 cut(s) 552, 865, 1008
CaiI CAGNNNCTG 2 cut(s) 1340, 1478
CciI TCATGA 1 cut(s) 1192
CfoI GCGC 2 cut(s) 723, 837
Cfr10I RCCGGY 1 cut(s) 561
Cfr13I GGNCC 3 cut(s) 313, 541, 885
CspAI ACCGGT 1 cut(s) 561
CviAII CATG 6 cut(s) 310, 716, 842, 911, 1037, 1193
DdeI CTNAG 3 cut(s) 173, 1144, 1386
DpnI GATC 8 cut(s) 12, 308, 656, 1243, 1332, 1413, 1482, 1507
DpnII GATC 8 cut(s) 10, 306, 654, 1241, 1330, 1411, 1480, 1505
DriI GACNNNNNGTC 1 cut(s) 949
EaeI YGGCCR 3 cut(s) 642, 712, 1008
Eam1104I CTCTTC 1 cut(s) 1156
Eam1105I GACNNNNNGTC 1 cut(s) 949
EarI CTCTTC 1 cut(s) 1156
Eco130I CCWWGG 6 cut(s) 30, 583, 667, 841, 880, 987
Eco24I GRGCYC 2 cut(s) 1294, 1306
Eco31I GGTCTC 2 cut(s) 1158, 1270
Eco32I GATATC 1 cut(s) 848
Eco47I GGWCC 3 cut(s) 313, 541, 885
Eco57I CTGAAG 1 cut(s) 1452
EcoNI CCTNNNNNAGG 1 cut(s) 587
EcoO109I RGGNCCY 1 cut(s) 541
EcoRI GAATTC 3 cut(s) 258, 500, 686
EcoRII CCWGG 2 cut(s) 543, 744
EcoRV GATATC 1 cut(s) 848
EcoT14I CCWWGG 6 cut(s) 30, 583, 667, 841, 880, 987
EcoT38I GRGCYC 2 cut(s) 1294, 1306
ErhI CCWWGG 6 cut(s) 30, 583, 667, 841, 880, 987
Esp3I CGTCTC 1 cut(s) 483
FaeI CATG 6 cut(s) 313, 719, 845, 914, 1040, 1196
FaqI GGGAC 6 cut(s) 385, 554, 630, 646, 778, 898
FatI CATG 6 cut(s) 309, 715, 841, 910, 1036, 1192
FauI CCCGC 1 cut(s) 207
FblI GTMKAC 2 cut(s) 783, 1257
Fnu4HI GCNGC 2 cut(s) 355, 1016
FriOI GRGCYC 2 cut(s) 1294, 1306
Fsp4HI GCNGC 2 cut(s) 355, 1016
FspBI CTAG 5 cut(s) 234, 285, 380, 668, 1032
GlaI GCGC 2 cut(s) 722, 836
GluI GCNGC 2 cut(s) 355, 1016
GsaI CCCAGC 2 cut(s) 1022, 1462
GsuI CTGGAG 3 cut(s) 429, 566, 621
HaeIII GGCC 6 cut(s) 5, 644, 672, 714, 917, 1010
HapII CCGG 4 cut(s) 562, 613, 1095, 1496
HhaI GCGC 2 cut(s) 723, 837
Hin1II CATG 6 cut(s) 313, 719, 845, 914, 1040, 1196
Hin6I GCGC 2 cut(s) 721, 835
HinP1I GCGC 2 cut(s) 721, 835
HincII GTYRAC 1 cut(s) 796
HindII GTYRAC 1 cut(s) 796
HinfI GANTC 6 cut(s) 296, 634, 766, 1337, 1382, 1454
HpaII CCGG 4 cut(s) 562, 613, 1095, 1496
HphI GGTGA 3 cut(s) 259, 599, 1285
Hpy166II GTNNAC 6 cut(s) 531, 610, 784, 796, 1174, 1258
Hpy8I GTNNAC 6 cut(s) 531, 610, 784, 796, 1174, 1258
HpyAV CCTTC 4 cut(s) 410, 755, 1410, 1427
HpyCH4III ACNGT 5 cut(s) 112, 190, 433, 439, 477
HpyCH4IV ACGT 1 cut(s) 1532
HpyCH4V TGCA 5 cut(s) 86, 473, 554, 569, 1025
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 720, 1012
HpyF3I CTNAG 3 cut(s) 173, 1144, 1386
HpySE526I ACGT 1 cut(s) 1532
Hsp92II CATG 6 cut(s) 313, 719, 845, 914, 1040, 1196
HspAI GCGC 2 cut(s) 721, 835
Kzo9I GATC 8 cut(s) 10, 306, 654, 1241, 1330, 1411, 1480, 1505
LmnI GCTCC 6 cut(s) 220, 250, 547, 811, 827, 1081
Lsp1109I GCAGC 2 cut(s) 366, 1002
MaeI CTAG 5 cut(s) 234, 285, 380, 668, 1032
MaeII ACGT 1 cut(s) 1532
MaeIII GTNAC 4 cut(s) 158, 287, 433, 1039
MalI GATC 8 cut(s) 12, 308, 656, 1243, 1332, 1413, 1482, 1507
MboI GATC 8 cut(s) 10, 306, 654, 1241, 1330, 1411, 1480, 1505
MboII GAAGA 7 cut(s) 254, 425, 986, 1173, 1251, 1259, 1437
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 2 cut(s) 654, 1241
MhlI GDGCHC 3 cut(s) 525, 1294, 1306
MlsI TGGCCA 2 cut(s) 714, 1010
MluI ACGCGT 1 cut(s) 1046
MluNI TGGCCA 2 cut(s) 714, 1010
MlyI GAGTC 2 cut(s) 628, 760
MmeI TCCRAC 1 cut(s) 1210
Mox20I TGGCCA 2 cut(s) 714, 1010
MroXI GAANNNNTTC 1 cut(s) 686
MscI TGGCCA 2 cut(s) 714, 1010
MseI TTAA 6 cut(s) 48, 204, 372, 536, 648, 948
MslI CAYNNNNRTG 1 cut(s) 1271
Msp20I TGGCCA 2 cut(s) 714, 1010
MspI CCGG 4 cut(s) 562, 613, 1095, 1496
MspR9I CCNGG 4 cut(s) 545, 614, 746, 1497
MunI CAATTG 1 cut(s) 708
MvaI CCWGG 2 cut(s) 545, 746
MvnI CGCG 1 cut(s) 1048
MwoI GCNNNNNNNGC 3 cut(s) 220, 720, 1012
NciI CCSGG 2 cut(s) 614, 1497
NcoI CCATGG 1 cut(s) 841
NdeII GATC 8 cut(s) 10, 306, 654, 1241, 1330, 1411, 1480, 1505
NlaIII CATG 6 cut(s) 313, 719, 845, 914, 1040, 1196
NlaIV GGNNCC 5 cut(s) 542, 886, 1060, 1077, 1421
NmeAIII GCCGAG 1 cut(s) 703
NmuCI GTSAC 3 cut(s) 158, 287, 1039
PagI TCATGA 1 cut(s) 1192
PcsI WCGNNNNNNNCGW 1 cut(s) 1420
PdmI GAANNNNTTC 1 cut(s) 686
PfeI GAWTC 4 cut(s) 296, 1337, 1382, 1454
PinAI ACCGGT 1 cut(s) 561
PkrI GCNGC 2 cut(s) 356, 1017
PleI GAGTC 2 cut(s) 628, 760
PpsI GAGTC 2 cut(s) 628, 760
PpuMI RGGWCCY 1 cut(s) 541
PshAI GACNNNNGTC 1 cut(s) 1179
Psp5II RGGWCCY 1 cut(s) 541
Psp6I CCWGG 2 cut(s) 543, 744
PspFI CCCAGC 2 cut(s) 1018, 1458
PspGI CCWGG 2 cut(s) 543, 744
PspN4I GGNNCC 5 cut(s) 542, 886, 1060, 1077, 1421
PspPI GGNCC 3 cut(s) 313, 541, 885
PspPPI RGGWCCY 1 cut(s) 541
PstNI CAGNNNCTG 2 cut(s) 1340, 1478
PsuI RGATCY 2 cut(s) 654, 1241
RseI CAYNNNNRTG 1 cut(s) 1271
SaqAI TTAA 6 cut(s) 48, 204, 372, 536, 648, 948
SatI GCNGC 2 cut(s) 355, 1016
Sau3AI GATC 8 cut(s) 10, 306, 654, 1241, 1330, 1411, 1480, 1505
Sau96I GGNCC 3 cut(s) 313, 541, 885
SchI GAGTC 2 cut(s) 628, 760
ScrFI CCNGG 4 cut(s) 545, 614, 746, 1497
SduI GDGCHC 3 cut(s) 525, 1294, 1306
SinI GGWCC 3 cut(s) 313, 541, 885
SmiMI CAYNNNNRTG 1 cut(s) 1271
SpeI ACTAGT 1 cut(s) 1031
SsiI CCGC 3 cut(s) 214, 231, 888
SspMI CTAG 5 cut(s) 234, 285, 380, 668, 1032
StyD4I CCNGG 4 cut(s) 543, 612, 744, 1495
StyI CCWWGG 6 cut(s) 30, 583, 667, 841, 880, 987
TaaI ACNGT 5 cut(s) 112, 190, 433, 439, 477
TaiI ACGT 1 cut(s) 1535
TaqI TCGA 4 cut(s) 194, 1283, 1380, 1414
TfiI GAWTC 4 cut(s) 296, 1337, 1382, 1454
Tru1I TTAA 6 cut(s) 48, 204, 372, 536, 648, 948
Tru9I TTAA 6 cut(s) 48, 204, 372, 536, 648, 948
TscAI CASTG 4 cut(s) 530, 645, 821, 1483
TseFI GTSAC 3 cut(s) 158, 287, 1039
TseI GCWGC 2 cut(s) 354, 1015
Tsp45I GTSAC 3 cut(s) 158, 287, 1039
TspDTI ATGAA 2 cut(s) 987, 1122
TspGWI ACGGA 2 cut(s) 840, 1361
TspRI CASTG 4 cut(s) 530, 645, 821, 1483
VpaK11BI GGWCC 3 cut(s) 313, 541, 885
XagI CCTNNNNNAGG 1 cut(s) 587
XapI RAATTY 5 cut(s) 258, 500, 686, 730, 1468
XbaI TCTAGA 1 cut(s) 379
XmaJI CCTAGG 1 cut(s) 667
XmiI GTMKAC 2 cut(s) 783, 1257
XmnI GAANNNNTTC 1 cut(s) 686
XspI CTAG 5 cut(s) 234, 285, 380, 668, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.